Abstract
The [3 + 2] cycloaddition (32CA) reaction of nitronic ester with methyl acrylate has been studied within the molecular electron density theory to analyse the mechanism and experimentally observed regioselectivity. Electron localisation function (ELF) study predicts zwitter-ionic character of the nitrone, allowing its participation in zw-type 32CA reactions associated with high energy barrier demanding overcome through appropriate electrophilic–nucleophilic interactions. Analysis of the CDFT indices predict the global electronic flux from the strong nucleophilic nitrone to the electrophilic methyl acrylate. These 32CA reactions are exergonic with negative reactions Gibbs free energies along ortho regiochemical pathway. Among the ortho and meta regiochemical pathways, ortho path is preferred owing to the higher thermodynamic stability of the cycloadducts. Bonding evolution theory (BET) study predicts one-step mechanism with early transition states for the ortho and meta pathways, in conformity with the ELF topological study at the transition states.
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1 Introduction
Since the last two decades, computational chemistry has emerged as an important tool to analyse the experimentally observed reactivity and selectivity outcomes by developing a systematic outline of the mechanism of chemical reactions [1]. However, in spite of the ever-increasing modern applications of the computational science in chemistry, the underlying theories of organic chemistry had not experienced major breakthrough since last 40 years, until in 2016 Domingo proposed the molecular electron density theory (MEDT) to recognise the decisive role of electron density changes in the molecular reactivity [2, 3]. Since last 4 years, MEDT has successfully analysed the experimental outcome of several 32CA reactions [3,4,5]. Recently, we have applied the MEDT concept to analyse the experimental outcome of strain promoted and catalysed 32CA reactions and the observed chemo-, regio- and stereoselectivite synthesis of spiroisoxazolines [6,7,8,9,10].
Within the MEDT framework, the three atom components (TACs) participating in the 32CA reactions are classified by characterising their electronic structure, into pseudodiradical, pseudo(mono)radical, carbenoid and zwitter-ionic type, which enables their respective participation in pdr- type, pmr-type, cb-type and zw-type 32CA reactions [3, 4]. These 32CA reactions show different reactivity profiles; the pdr-type 32CA reactions are associated with lower energy barrier and take place easily, while the zw-type 32CA reactions show high energy barrier, demanding overcome through electrophilic–nucleophilic interaction between the reactants [9].
Herein, we present an MEDT study at the B3LYP/6–311 + + G(d,p) level for 32CA reactions of a nitronic ester 1 with methyl acrylate 2, experimentally realised by Sato and co-workers (see Scheme 1) [11]. However, experimental study by Sato and co-workers has not addressed the mechanistic differences in the feasible reaction paths and the role of electron density flux on the 32CA reaction.
This research work presents the MEDT study in five sections, 3.1 to 3.5 (i) In Sect. 3.1, the topological analysis of the electron localisation function (ELF) at the ground state structures of the reagents 1 and 2 is performed to represent their electronic structure and consequently to assess their reactivity in 32CA reactions [12, 13]. (ii) In Sect. 3.2, reactivity indices defined within the conceptual density functional theory (CDFT) are analysed to comprehend the polarity of the 32CA reactions [14, 15]. (iii) In Sect. 3.3., potential energy surfaces (PES) along the feasible regioisomeric channels of the 32CA reactions is studied to predict the energy profiles and the global electron density transfer (GEDT) is calculated at the TSs [16, 17]. (iv) In Sect. 3.4, the conjunction of ELF with Thom's catastrophe, namely the bonding evolution theory (BET) proposed by Krokidis is used to structure the mechanism for electron density changes along the regioisomeric paths [12, 13, 18, 19]. (v) In Sect. 3.5, the ELF of the located TSs is analysed.
2 Computational methods
Gaussian 16 package has been used for all calculations [20]. The Berny analytical gradient optimisation method was employed at the B3LYP/6–311 + + G(d,p) level for the optimisation of the stationary points along the potential energy surface of the 32CA reactions [21, 22]. The use of B3LYP functional has been justified as a reliable and accurate method in the analysis of several recent cycloaddition reactions [23,24,25,26,27,28,29].
Frequency calculations at the optimised TSs confirmed the presence of one imaginary frequency, while the absence of imaginary frequency was verified for the local minimum. Intrinsic Reaction coordinate (IRC) calculations using Gonzales–Schlegel integration method were carried out to verify the minimum energy reaction pathway connecting the reactants and products via the located TSs [30,31,32]. Solvent effects in carbon tetrachloride (CCl4) were considered using polarisable continuum model (PCM) by modelling the solvent using self-consistent reaction field (SCRF) method [33,34,35,36,37].
The CDFT indices are calculated using equations reviewed in Reference 14 and 15 [14, 15]. The global electron density theory (GEDT) at the TSs of each reacting framework was calculated from natural population analysis (NPA) as follows [17, 38, 39]:
, where q represents the atomic charges, the summation of charges on all atoms in the considered framework represents the GEDT, the positive sign of GEDT indicating global electronic flux from that framework to the other.
Topological analysis of the ELF [12] at the reagents, TSs and IRC points are calculated using Multiwfn software [40] and the isosurfaces are visualised using VMD software [41].
3 Results and discussion
3.1 ELF topological analysis of nitrone 1 and methyl acrylate 2
Under the MEDT framework, a reasonably good correlation has been established between the electronic structure of three atom components (TACs) and their reactivity in 32CA reactions [2,3,4]. Herein, the ELF of the ground state structures of the reagents 1 and 2 is studied to represent their electronic structures and reactivity in 32CA reactions. Table 1 lists the significant ELF valence basin populations of nitrone 1 and methyl acrylate 2, while the ELF localisation domains are shown in Fig. 1. Based on the ELF valence populations, the Lewis structures of the reagents are proposed and are given in Fig. 2.
The ELF of nitrone 1 shows two monosynaptic basins, V(O1) and V'(O1) integrating 5.77 e, one disynaptic basin V(C3,N2) integrating 4.18 e and one disynaptic basin V(N2,O1) integrating 1.55 e, which are associated with the non-bonding electron density on O1 oxygen, underpopulated C3-N2 double bond and underpopulated N2-O1 single bond, respectively.
The ELF of methyl acrylate 2 shows two disynaptic basins for the C4-C5 bonding region with total integrating populations of 3.33 e, associated with the underpopulated C4-C5 double bond, and one disynaptic basin for the C5-C6 bonding region integrating 2.31 e.
After establishing the bonding pattern of the reagents, the atomic charge distribution of nitrone 1 and methyl acrylate 2 was analysed through NPA (Fig. 2) [38, 39]. Oxygen atom O1 of nitrone 1 is negatively charged (−0.46 e) and C3 carbon atom shows charge of −0.22 e, while N2 nitrogen is positively charged (0.34 e). This suggests charge separation in the nitrone although differing from the charges expected by the Lewis's bonding model. Although nitrone 1 is classified as a "zwitterionic" TAC from ELF study, this terminology is not synonymous to the dipolar electronic structure of the nitrones. Instead, it indicates the specific bonding pattern (considering no charges) of the resonance Lewis structure represented by Huisgen for “1,3-dipoles" [42]. In the methyl acrylate 2, carbon atoms C4 and C5 show negative charge values -0.29 and -0.28.
3.2 Analysis of the CDFT indices of nitrone 1 and methyl acrylate 2
The concept of "Conceptual DFT", originated from the pioneering work of Parr, has been utilised in several studies to assess the chemical reactivity of structures participating in 32CA reactions [14, 15, 43,44,45,46]. Reactivity indices defined within the conceptual DFT, namely the CDFT indices, have well documented literature and provide an initial comprehension of the molecular reactivity by addressing the chemical behaviour of the reactants [15]. Domingo defined the standard scales for electrophilicity and nucleophilicity indices at the B3LYP/6-31G(d) level, which has therefore been employed herein for the CDFT analysis [47, 48]. Consequently, the CDFT indices, electronic chemical potential, μ, chemical hardness, ɳ, electrophilicity, ω, and nucleophilicity, N, at the ground state of nitrone 1 and methyl acrylate 2 are listed in Table 2 [49,50,51,52].
The electronic chemical potentials μ of nitrone 1, μ = −3.93 eV (1) is higher than that of methyl acrylate 2 μ = −4.80 eV, suggesting that along the 32CA reaction, the electron density will flux from nitrone 1 to the methyl acrylate 2 [15, 49].
The electrophilicity ω index and the nucleophilicity N index of nitrone 1 is 1.38 and 2.75 eV, respectively, being classified as a weak electrophile and a strong nucleophile on the respective scales [47, 48, 51, 52]. The methyl acrylate 2, with electrophilicty indices ω = 2.15 eV is classified as strong electrophiles and with nucleophilicity indices N = 1.62 eV as weak nucleophiles. Consequently, along these zw-type 32CA reactions, the methyl acrylate 2 will behave as electrophiles while nitrone 1 will behave as a nucleophile, in conformity with the electronic chemical potentials μ of these species.
3.3 Analysis of the energy profile associated with the 32CA reactions of nitrone 1 with methyl acrylate 2
Due to non-symmetry of methyl acrylate 2, two regioisomeric paths, namely the ortho and meta (see Scheme 1), are feasible for these 32CA reactions. The ortho reaction path is associated with the formation of O1-C5 and C3-N4 bonds, while the meta channel with the formation of O1-N4 and C3-C5 bonds. The stationary points along these two reactions paths were located and characterised, the reagents, nitrone 1 and methyl acrylate 2, two TSs for each 32CA reaction, TS1-ex, TS2-en, TS3-ex and TS4-en and the corresponding adducts 3–6, respectively, for the 32CA reactions of nitrone 1 with 2. TS1-ex and TS1-en correspond to the ortho TSs leading to the formation of cycloadducts 3 and 4, while TS2-ex and TS2-en are the meta TSs leading to the formation of cycloadducts 5 and 6, respectively. Table 3 lists the relative electronic energies, enthalpies, Gibbs free energies and entropies of the TSs and the cycloadducts.
The energy profile of the 32CA reactions was studied to arrive at some important conclusions (1) These 32CA reactions show negative reaction Gibbs free energies for ortho channel, ∆G of -0.28 and −0.18 kcal.mol−1 for cycloadducts 3 and 4, respectively, in gas phase, while only cycloadducts 3 shows negative reaction Gibbs free energy, ∆G of −0.20 kcal.mol−1 in CCl4. These results suggesting exergonic reaction along ortho channel, demanding the analysis of the thermodynamic stability of the cycloadducts to predict the preferred regiochemical path. Along the ortho channel, the reaction enthalpies are −12.83 (3) and −12.35 (4) kcal·mol−1 in gas phase and −12.50 (3) and −11.72 (4) kcal·mol−1 in CCl4, while along the meta reaction path, the products show less negative reaction enthalpies −11.97 (5) and −12.25 (6) kcal·mol−1 in gas phase and −11.64 (5) and −12.04 (6) kcal·mol−1 in CCl4. Thus, the ortho adducts show higher relative stability than the meta ones owing to their negative reaction enthalpies and lower reaction free energies, suggesting preference for the ortho reaction path leading to the formation of cycloadducts 3 and 4. (2) These 32CA reactions show activation enthalpies between 15.24 (TS1-ex) and 14.36 (TS1-en) in gas phase and between 15.41 (TS1-ex) and 14.84 (TS1-en) in CCl4, in coherence with their zw-type classification associated with high activation energies. (3) the inclusion of CCl4 slightly increases the activation enthalpies due to better solvation of the reagents than the TSs, while the reaction enthalpies are increased in CCl4 [53].
The B3LYP/6–311 + + G(d,p) optimised geometries of the TSs are given in Fig. 3. In gas phase, the distances between O1 and C5, and C3 and C4 interacting centres at the ortho TSs are as follows: 2.37 and 2.04 Å, at TS1-ex and 2.51 and 1.96 Å, at TS-en, while the distances between O1 and C4, and C3 and C5 interacting centres at the meta TSs are: 2.05 and 2.20 Å, at TS2-ex and 2.07 and 2.17 Å, at TS2-en, respectively. The TSs geometries show similar trend and minimal changes on inclusion of solvent effects in CCl4. These geometrical parameters imply the extent of bond formation. (1) Considering that the C–O and C–C bond formation begins at the distances of 1.70–1.79 and 1.50–1.70 Å, respectively, these geometrical parameters indicate that at the ortho TSs TS1-ex and TS1-en, the formation of the C–O or C–C single bonds has not yet begun [3]. (2) Considering that the C–C bond formation begins at the distances of 1.90 Å, it is evident that at the meta TSs TS2-ex and TS2-en, the formation of the C–C single covalent bond has not yet started.
Finally, the polar nature of these 32CA reactions was evaluated by the GEDT calculations at the TSs [17]. The gas phase GEDT values at the TSs are 0.07 e at TS1-ex, 0.14 e at TS1-en, 0.03 e at TS2-ex, and 0.03 e at TS2-en (see Table 3). In CCl4, no significant changes occur in the GEDT values at all TSs. The electron density fluxes from nitrone 1 acting as the nucleophile towards methyl acrylate 2 each case, these reactions are classified as forward electron density flux (FEDF), evidenced by the higher nucleophilicity of nitrone 1 relative to the strongly electrophilic methyl acrylate 2 (see Table 2) [54].
3.4 Mechanistic implications along the regioisomeric channels of 32CA reaction of nitrone 1 with methyl acrylate 2 from bonding evolution theory (BET) study
The ELF basin populations at the reacting centres for the 32CA reaction of nitrone 1 with methyl acrylate 2 along the ortho regioisomeric path in TS1-ex are given in Table 4. The identification of catastrophe from ELF basin analysis allows characterising six topological phases I, II, III, IV, V and VI, identified by the starting points P1, P2, P3, P4, P5 and P6, respectively (see Table 4).
The ELF topology of the starting point P1 shows similar bonding pattern as the individual reagents (see Table 1). At P2, (d(C3-C5) = 2.226 Å, d(O1-C4) = 2.642 Å)), the monosynaptic basin V(N2) associated with the N2 nitrogen lone pair integrating 1.15 e is created by deriving electron density from the C3-N2 bonding region experiencing depopulation from 4.17 e at P1 to 2.88 e at P2. This phase also shows the presence of monosynaptic basin V(C3) integrating 0.34 e. Phases III is characterised by the creation of pseudoradical centres at C3 and C4 at P3 showing the formation of monosynaptic basins V(C3) and V(C4) integrating 0.55 e and 0.99 e, respectively. Note that C3-N2 bonding region experiences depopulation from 2.88 e at P2 to 2.49 e at P3, while the C4-C5 bonding region experiences depopulation from 3.14 e at P2 to 2.84 e at P3. The transition structure TS1-ex belongs to phase III. Note that at the TS1-ex, the formation of O1-C5 and C3-N4 covalent bonds has not begun. In phase IV, identified by the IRC point P4, the first C3-C5 single bond formation begins at the C3-C5 distance of 1.718 Å, characterised by the creation of disynaptic basin V(C3, C5) integrating 1.09 e, while in phase VI, identified by the IRC point P6, the second O1-C4 single bond formation begins at the O1-C4 distance of 1.728 Å, characterised by the creation of disynaptic basin V(O1,C4) integrating 0.74 e. Finally, at the cycloadduct 3, the molecular geometry is relaxed at O1-C4 and C3-C5 distances of 1.464 and 1.538 Å, respectively.
3.5 ELF topological analysis at the TSs
The ELF valence basin populations at the four TSs, TS1-ex, TS1-en, TS2-ex and TS2-ex are listed in Table 5, while the ELF localisation domains are represented in Fig. 4. ELF of the ortho TSs, TS1-ex and TS1-en show the presence of monosynaptic V(N2) integrating 1.56 e and 1.34 e, respectively, which are absent in the ELF of nitrone 1. ELF of the TS1-ex shows the presence of V(C3) and V(C4) monosynaptic basins integrating 0.55 e and 0.99 e, respectively, while only V(C3) monosynaptic basin is shown in TS1-en. The disynaptic V(C3,N2) basin in nitrone 1 associated with the C3-N2 bonding region integrating 4.18 e in nitrone 1 is depopulated to 2.49 e in TS1-ex, 2.56 e in TS1-en, 2.47 e in TS2-ex and 2.48 e in TS2-en. The disynaptic V(C4,C5) and V’(C4,C5) basins in the methyl acrylate 2 associated with the C4-C5 bonding region with total integrating population of 3.33 e is depopulated to 2.87 e in TS1-ex, 2.29 e in TS1-en, 2.81 e in TS2-ex and 2.81 e in TS2-en. At the ortho and meta TSs, the formation of new single covalent bond has not been started.
4 Conclusion
An MEDT study is presented for 32CA reaction of a nitronic ester 1 to methyl acrylate 2 at the B3LYP/6–311 + + G(d,p) computational level. The ELF topological analysis at the ground state structures allow classification of the nitrone 1 as a zwitter-ionic TAC, allowing its participation in zw-type 32CA reactions, demanding appropriate electrophilic–nucleophilic interactions.
The global electronic flux from the nitrone 1 to methyl acrylate 2 is predicted, owing to the high electronic chemical potential and strong nucleophilicity of the cyclic nitrone 1 relative to the methyl acrylate 2, which is confirmed from the GEDT calculations at the located TSs. These 32CA reactions are exergonic with negative free energy of reaction. The cycloadducts 3 and 4 show higher thermodynamic stability relative to the cycloadducts 6 and 5, suggesting regioselectivity in complete coherence with the experiments.
BET study along the regioisomeric reaction channels allows arriving at some important mechanistic conclusions. Along both the reaction paths, in the first four phases, the C=N bonding region of nitrone 1 and C=C bonding region of the methyl acrylate 2 are depopulated to create pseudoradical centres at C3, C4 and C5 carbons and lone pair electron density at N2 nitrogen. ELF study at the TSs show early TSs along the ortho and meta reaction paths, when the formation of new single covalent bond has not been started.
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Mohammad-Salim, H.A. A molecular electron density theory study of the [3 + 2] cycloaddition reaction of nitronic ester with methyl acrylate. Theor Chem Acc 140, 83 (2021). https://doi.org/10.1007/s00214-021-02789-y
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DOI: https://doi.org/10.1007/s00214-021-02789-y