Collection
Progress in genomics, transcriptomics and breeding of crops
- Submission status
- Closed
Editors
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Dr. Muhammad Azhar Nadeem
Dr. Muhammad Azhar Nadeem, an Assistant Professor at Sivas University of Science and Technology, Turkey has documented great skills and expertise in crop science, plant genomics and molecular plant breeding. Dr. Nadeem has been actively engaged in research activities involving the assessment of genetic diversity, population structure and performing genome-wide association studies for the identification of genomic regions, and their validation through KASP assay for marker-assisted breeding. He has a good number of publications and running a number of projects about the marker-assisted breeding of legumes (azharjoiya22@gmail.com).
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Dr. Faheem Shehzad Baloch
Dr. Faheem Shehzad Baloch is an Associate Professor at Sivas University of Science and Technology, Turkey. Dr. Baloch research activities mainly focused on the use of Next generation sequencing, DNA molecular markers for germplasm characterization, identification of genomic regions for traits of agricultural interest, development and validation molecular markers for marker assisted selection and genomic prediction particularly in cereals and legumes. Dr. Baloch has completed many projects as leader and researcher funded by national and international organizations and is currently running a European Union project (balochfaheem13@gmail.com).
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Dr. Ephrem Habyarimana
Dr. Ephrem Habyarimana, Ir, MS, MS, MASt, PhD, is a Research Scientist/Chief Scientist at CREA, Italy, with more than 25 years' skills and expertise in agronomy, crop science, genetics and plant breeding integrating diverse technologies i.e., agroecological and genomic modelling, big data analytics e.g., phenomics, genomics for the sustainable crop improvement. He trained in North and Latin America, Africa, Asia, and Europe, authored many scientific papers; participated in Big Data DeepTech innovations, European DataSci & Artificial Intelligence Awards finalist, and co-author of several sorghum varieties (ephrem.habyarimana@crea.gov.it).
Articles (100 in this collection)
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Genome-wide identification and expression analysis of metal tolerance protein (MTP) gene family in soybean (Glycine max) under heavy metal stress
Authors (first, second and last of 10)
- Ahmed H. El-Sappah
- Manzar Abbas
- Jia Li
- Content type: Original Article
- Published: 18 January 2023
- Pages: 2975 - 2990
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Triticum aestivum: antioxidant gene profiling and morpho-physiological studies under salt stress
Authors (first, second and last of 8)
- Musarrat Ramzan
- Memoona Gillani
- Sami Ullah
- Content type: Original Paper
- Published: 10 January 2023
- Pages: 2569 - 2580
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RETRACTED ARTICLE: Dissecting the biochemical and molecular-genetic regulation of diverse metabolic pathways governing aroma formation in indigenous aromatic indica rice varieties
Authors
- Puja Ghosh
- Aditya Banerjee
- Aryadeep Roychoudhury
- Content type: Original Article
- Published: 05 January 2023
- Pages: 2479 - 2500
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Genetic analysis for detection of genes associated to drought tolerance in rice accessions belonging to north east India
Authors (first, second and last of 6)
- Rahul K. Verma
- Sanjay K. Chetia
- Mahendra K. Modi
- Content type: Original Article
- Published: 19 December 2022
- Pages: 1993 - 2006
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Evaluating genetic diversity of geographically diverse populations of Embelia ribes Burm f., a highly medicinal woody liana from the Western Ghats of India, using random amplified polymorphic DNA (RAPD) and intersimple sequence repeats (ISSR) markers
Authors (first, second and last of 7)
- Vidya V. Kamble
- Asif S. Tamboli
- Nikhil B. Gaikwad
- Content type: Original Article
- Published: 17 December 2022
- Pages: 1603 - 1615
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Candidate gene based SSR and SNP markers for gynoecy in bitter gourd (Momordica charantia L.)
Authors (first, second and last of 5)
- Nivethitha Baluchamy
- Pradeepkumar Thayyil
- Veni Koorathodi
- Content type: Original Article
- Published: 19 November 2022
- Pages: 1125 - 1132
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Characterization and expression analysis of basic leucine zipper (bZIP) transcription factors responsive to chilling injury in peach fruit
Authors (first, second and last of 10)
- Muhammad Muzammal Aslam
- Li Deng
- Zhiqiang Wang
- Content type: Original Article
- Published: 05 November 2022
- Pages: 361 - 376
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Investigation of antimicrobial activities and molecular characterization of the species belong to Origanum, Thymus and Thymbra genera by ISSR
Authors (first, second and last of 5)
- Sibel Kerem
- Nezahat Koşar
- Özlem Özbek
- Content type: Original Article
- Published: 04 November 2022
- Pages: 289 - 298
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An overview of genome-wide association mapping studies in Poaceae species (model crops: wheat and rice)
Authors (first, second and last of 4)
- Muhammad Abu Bakar Zia
- Muhammad Farhan Yousaf
- Muhammad Naeem
- Content type: Original Article
- Published: 02 November 2022
- Pages: 12077 - 12090
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Transcriptome changes associated with boron applications in fruits of watercore-susceptible pear cultivar
Authors (first, second and last of 6)
- Xiao Liu
- Dong-He Liu
- Chun-Lei Wang
- Content type: Original Article
- Published: 29 October 2022
- Pages: 12055 - 12061
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BZR proteins: identification, evolutionary and expression analysis under various exogenous growth regulators in plants
Authors (first, second and last of 12)
- Uzair Ullah
- Abdullah Shalmani
- Zeeshan Ali Buttar
- Content type: Original Article
- Published: 29 October 2022
- Pages: 12039 - 12053
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Transcriptomic analysis of bakanae disease resistant and susceptible rice genotypes in response to infection by Fusarium fujikuroi
Authors (first, second and last of 10)
- Bishnu Maya Bashyal
- Kirti Rawat
- Rashmi Aggarwal
- Content type: Original Article
- Published: 21 October 2022
- Pages: 11959 - 11972
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The regulatory role of long non- coding RNAs as a novel controller of immune response against cancer cells
Authors (first, second and last of 6)
- Dina Mofed
- Jihad I Omran
- Tamer Z. Salem
- Content type: Original Article
- Open Access
- Published: 07 October 2022
- Pages: 11775 - 11793
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Whole genome sequencing of ASD 16 and ADT 43 to identify predominant grain size and starch associated alleles in rice
Authors (first, second and last of 9)
- Jayakanthan Mannu
- Abillasha Mohan Latha
- Ramalingam Jegadeesan
- Content type: Original Article
- Published: 06 October 2022
- Pages: 11743 - 11754
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Genome sequencing of Colletotrichum gloeosporioides ES026 reveals plausible pathway of HupA
Authors (first, second and last of 9)
- Haiyang Xia
- Hamza Armghan Noushahi
- Shaohua Shu
- Content type: Original Article
- Published: 26 September 2022
- Pages: 11611 - 11622
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General guidelines for CRISPR/Cas-based genome editing in plants
Authors (first, second and last of 8)
- Emre Aksoy
- Kubilay Yildirim
- Ufuk Demirel
- Content type: Review
- Published: 15 September 2022
- Pages: 12151 - 12164
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Inheritance of androgenesis response in pepper
Authors (first, second and last of 5)
- Nihal Denli
- Atilla Ata
- Hatıra Taşkın
- Content type: Original Article
- Published: 14 September 2022
- Pages: 11601 - 11609
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Vitamin C and fruit quality consensus in breeding elite European strawberry under multiple interactions of environment
Authors
- Muhammad Nisar ALI
- Sedat SERÇE
- Content type: Original Article
- Published: 14 September 2022
- Pages: 11573 - 11586
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Molecular characterization of Heterodera cruciferae Franklin, 1945 from cabbage fields in Niğde province, Turkey
Authors (first, second and last of 4)
- Halil Toktay
- Badel G. Akyol
- Mustafa İmren
- Content type: Original Article
- Published: 12 September 2022
- Pages: 11557 - 11562
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Identification and characterization of genes for drought tolerance in upland rice cultivar ‘Banglami’ of North East India
Authors (first, second and last of 6)
- Rahul K. Verma
- Sanjay K. Chetia
- Mahendra K. Modi
- Content type: Original Article
- Published: 12 September 2022
- Pages: 11547 - 11555
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The root-specific NtR12 promoter-based expression of RIP increased the resistance against bacterial wilt disease in tobacco
Authors (first, second and last of 11)
- Tiecheng Cai
- Hua Chen
- Weijian Zhuang
- Content type: Original Article
- Published: 12 September 2022
- Pages: 11503 - 11514
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Inactivation of a candidate effector gene of Zymoseptoria tritici affects its sporulation
Authors
- Zemran Mustafa
- Fatih Ölmez
- Mahinur Akkaya
- Content type: Original Article
- Published: 12 September 2022
- Pages: 11563 - 11571
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Exploring the Agrobacterium-mediated transformation with CRISPR/Cas9 in cucumber (Cucumis sativus L.)
Authors (first, second and last of 9)
- Ziyao Zhao
- Yaguang Qi
- Yuhong Li
- Content type: Original Article
- Published: 03 September 2022
- Pages: 11481 - 11490
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SSR markers in revealing extent of genetic diversity and phylogenetic relationships among chickpea core collection accessions for Western Himalayas
Authors (first, second and last of 14)
- Asma Hamid Mir
- Mohd Ashraf Bhat
- Reyazul Rouf Mir
- Content type: Original Article
- Published: 25 August 2022
- Pages: 11469 - 11479
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Identification and primary distribution of Citrus viroid V in citrus in Punjab, Pakistan
Authors (first, second and last of 10)
- Amjad Ali
- Ummad ud din Umar
- Rashida Parveen
- Content type: Original Article
- Published: 24 August 2022
- Pages: 11433 - 11441
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CRISPR/Cas tool designs for multiplex genome editing and its applications in developing biotic and abiotic stress-resistant crop plants
Authors (first, second and last of 8)
- Jagmohan Singh
- Dimple Sharma
- Satnam Singh
- Content type: Original Article
- Published: 24 August 2022
- Pages: 11443 - 11467
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Association mapping for abiotic stress tolerance using heat- and drought-related syntenic markers in okra
Authors (first, second and last of 5)
- Ikhlaq Ahmad
- Rashid Mehmood Rana
- Muhammad Sajjad
- Content type: Original Article
- Published: 12 August 2022
- Pages: 11409 - 11419
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Integrating speed breeding with artificial intelligence for developing climate-smart crops
Authors
- Krishna Kumar Rai
- Content type: Original Article
- Published: 08 August 2022
- Pages: 11385 - 11402
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Genome wide association mapping of yield and various desirable agronomic traits in Rice
Authors (first, second and last of 11)
- Muhammad Ashfaq
- Abdul Rasheed
- Urooj Mubashar
- Content type: Original Article
- Published: 08 August 2022
- Pages: 11371 - 11383
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Study of genetic modifications of flower development and methylation status in phytoplasma infected Brassica (Brassica rapa L.)
Authors (first, second and last of 8)
- Mohammad Aijaz Ahmad
- Samina Jam Nazeer Ahmad
- Anis Ali Shah
- Content type: Original Article
- Published: 02 August 2022
- Pages: 11359 - 11369
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SSR marker-based genetic characterization of Turkish oriental tobaccos
Authors (first, second and last of 5)
- Ibrahim Saygili
- Nejdet Kandemir
- Ali Kemal Ayan
- Content type: Original Article
- Published: 01 August 2022
- Pages: 11351 - 11358
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Transcriptomics for Drought Stress Mediated by Biological Processes in-relation to Key Regulated Pathways in Gossypium darwinii
Authors (first, second and last of 14)
- Cuilian Xu
- Muhammad Kashif Ilyas
- Haodong Chen
- Content type: Original Article
- Published: 30 July 2022
- Pages: 11341 - 11350
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Comprehensive transcriptome analysis unravels the crucial genes during adventitious root development induced by carbon monoxide in Cucumis sativus L.
Authors (first, second and last of 9)
- Fahong Yun
- Dengjing Huang
- Weibiao Liao
- Content type: Original Article
- Published: 29 July 2022
- Pages: 11327 - 11340
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Chemical mutagenesis: role in breeding and biofortification of lentil (Lens culinaris Medik) mutant lines
Authors (first, second and last of 4)
- Aamir Raina
- Mohammad Rafiq Wani
- Samiullah Khan
- Content type: Original Article
- Published: 28 July 2022
- Pages: 11313 - 11325
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SSR-based genome-wide association study in turkish durum wheat germplasms revealed novel QTL of accumulated platinum
Authors
- Ahmad Alsaleh
- Content type: Original Article
- Published: 11 July 2022
- Pages: 11289 - 11300
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Trehalose: a promising osmo-protectant against salinity stress—physiological and molecular mechanisms and future prospective
Authors (first, second and last of 12)
- Muhammad Nawaz
- Muhammad Umair Hassan
- Sameer H. Qari
- Content type: Original Article
- Published: 08 July 2022
- Pages: 11255 - 11271
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Determination of genotoxic damages of picloram and dicamba with comet assay in Allium cepa rooted in tissue culture and distilled water
Authors (first, second and last of 6)
- Cigdem Alev Ozel
- Fatma Unal
- Deniz Yuzbasioglu
- Content type: Original Article
- Published: 08 July 2022
- Pages: 11273 - 11280
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Genome wide and evolutionary analysis of heat shock protein 70 proteins in tomato and their role in response to heat and drought stress
Authors (first, second and last of 6)
- Muhammad Zulfiqar Ahmad
- Zamarud Shah
- Afrasyab Khan
- Content type: Original Article
- Published: 04 July 2022
- Pages: 11229 - 11241
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Genome editing (CRISPR-Cas)-mediated virus resistance in potato (Solanum tuberosum L.)
Authors (first, second and last of 4)
- Jagesh Kumar Tiwari
- Jeevalatha A.
- S. M. Paul Khurana
- Content type: Review
- Published: 28 June 2022
- Pages: 12109 - 12119
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Narrowing down molecular targets for improving phosphorus-use efficiency in maize (Zea mays L.)
Authors (first, second and last of 9)
- Krishan Kumar
- Pranjal Yadava
- Sujay Rakshit
- Content type: Review
- Published: 25 June 2022
- Pages: 12091 - 12107
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Isolation of the 3β-HSD promoter from Digitalis ferruginea subsp. ferruginea and its functional characterization in Arabidopsis thaliana
Authors (first, second and last of 8)
- Noreen Aslam
- Muhammad Sameeullah
- Ekrem Gurel
- Content type: Original Article
- Published: 22 June 2022
- Pages: 7173 - 7183
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Morphological and molecular characterization of some Tomato (Solanum lycopersicum L.) genotypes collected from Erzincan Province of Turkey
Authors
- Halil İbrahim Öztürk
- Content type: Original Article
- Published: 22 June 2022
- Pages: 7111 - 7121
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Breeding history for shattering trait in sesame: classic to genomic approach
Authors (first, second and last of 5)
- Moin Qureshi
- D. Ray Langham
- Engin Yol
- Content type: Original Article
- Published: 22 June 2022
- Pages: 7185 - 7194
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Polyphenolics, antioxidant characterization and DNA barcoding of Kala zeera [Bunium persicum (Boiss.) Fedtsch] through multiple barcode analysis to unravel best barcode combination
Authors (first, second and last of 9)
- Salima Fayaz
- Reetika Mahajan
- Sajad Majeed Zargar
- Content type: Original Article
- Published: 21 June 2022
- Pages: 7205 - 7217
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Chlorophyll fluorescence and grain filling characteristic of wheat (Triticum aestivum L.) in response to nitrogen application level
Authors (first, second and last of 11)
- Hafeez Noor
- Min Sun
- Zhiqiang Gao
- Content type: Original Article
- Published: 20 June 2022
- Pages: 7157 - 7172
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Genetic transformation of common beans (Phaseolus vulgaris L.) through Agrobacterium tumefaciens carrying Cry1Ab gene
Authors
- Sevil Sağlam Yılmaz
- Khalid Mahmood Khawar
- Cemalettin Yaşar Çiftçi
- Content type: Original Article
- Published: 18 June 2022
- Pages: 7195 - 7203
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Genetic variation among einkorn genotypes based on gene targeted functional markers and its possible relationship with drought tolerance at seed germination stage
Authors
- Enes Gokhan Yilmaz
- Iskender Tiryaki
- Ugur Sari
- Content type: Original Article
- Published: 18 June 2022
- Pages: 7389 - 7398
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DNA marker based diversity across rice genotypes and advanced breeding lines bred for temperate regions of North-West India
Authors (first, second and last of 11)
- Nakeeb-Un-Nisa
- Aafreen Sakina
- Shabir H. Wani
- Content type: Original Article
- Published: 18 June 2022
- Pages: 7145 - 7155
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Harnessing the hidden allelic diversity of wild Cicer to accelerate genomics-assisted chickpea crop improvement
Authors (first, second and last of 4)
- Jitendra Kumar Mohanty
- Uday Chand Jha
- Swarup K. Parida
- Content type: Original Article
- Published: 16 June 2022
- Pages: 5697 - 5715