Collection
New Perspectives within Clinical Cancer Informatics
- Submission status
- Closed
Several challenges and controversies exist in the domain of clinical cancer treatment. These include therapeutic modalities to achieve better therapeutic effects in tumor treatment; the efficacy of immunotherapy based on immune checkpoint inhibitors (e.g., PD1 inhibitors) and novel Chimeric antigen receptor (CAR) T-cell therapy; the value of traditional herbal medicine as adjunctive; and whether risk factor mitigation can significantly reduce tumor mortality and improve overall survival of preoperative tumor patients. Such clinical oncology questions can be answered by pertinent data with rational and effective processing of clinical data using appropriate statistical methods.
Along with oncologists' improved understanding of study design for clinical trials, the number of publicly registered clinical trials in the ClinicalTrials.gov results database has significantly increased worldwide. Large-scale multicenter randomized clinical trials are being increasingly conducted. Software and pipelines for powerful statistical analysis have been developed to analyze the data extracted from RCTs of the same study design. Secondary analysis including network Meta-analysis can address urgent questions about which among multiple treatment modalities can achieve better treatment outcomes. In addition, clinical informatics analysis offers great potential in leveraging oncology clinical data. The Surveillance, Epidemiology, and End Results (SEER) database contains a large amount of clinicopathological data on oncology patients. A series of informatics analyses (e.g., Kaplan-Meier plot analysis, univariate and multivariate logistics regression analysis, receiver operating characteristics (ROC) curve analysis, nomogram plot analysis, and calibration plot analysis) can be performed to analyze the clinicopathological data obtained from SEER database or oncologist’ hospital cohort data. By performing these analyses, a competing risk model can be constructed, and thereby the risk factors for cancer-specific mortality (CSM) in specific cancer can be identified. The procurement of clinical oncology data is time-consuming and always requires a long follow-up, and therefore needs to be fully utilized.
Therefore, in this Topical Collection, we will collect articles focusing on using statistical and informatics approaches to analyze clinical oncology data and address significant clinical issues. Both original research and review articles are welcome.
Potential topics may include but are not limited to the following
(1) Research using meta-analysis and systemic review to compile clinical oncology-related randomized controlled trials;
(2) The application of network meta-analysis in addressing clinical oncology questions;
(3) Research with reasonable and well-planned clinical oncology trials such as single-centered/multi-centered cross-sectional studies, retrospective controlled studies, cohort studies, and randomized controlled trials;
(4) Case reports regarding a novel therapeutic approach in the treatment of a rare disease;
(5) Research aiming to construct a competing prognostic model and identify the risk factors for cancer-specific mortality in specific cancer;
(6) Retrospective studies aiming to identify the risk factors for postoperative pathological upgrading of specific cancer.
Keywords: statistical methods, meta-analysis, systematic review, clinical trials, bioinformatics approach, cancer informatics
Editors
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Weilin Jin
Professor, Lanzhou University, China He is a Professor at Lanzhou University. He received his Ph.D. and M.D. degree at the Fourth Military Medical University followed by famous neurobiologist Prof. Gong Ju, a CAS member. At 2006, he joined the Institute of Neurosciences at Shanghai Jiao Tong University as an Associated Professor. At 2021, he was recruited to Lanzhou University. His lab is focused on molecular mechanism of axon regeneration, tumor epigenetics and cancer neuroscience.
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Simin Li ,
Simin Li
PhD, Southern Medical University, China She obtained her BDS and MSc from Harbin Medical University, which is one of the most famous medical universities in China. She obtained her PhD from the University of Leipzig and was awarded the Dr. Karl Zeiss Award (the best doctoral dissertation of the University of Leipzig 2020). After that, she did two years of postdoc research at the Southern Medical University in China. As of now, she has 41 published academic papers in international Sci-indexed journals to her name, and obtained an h-index of 11.
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Qian Wang
PhD, Shandong First Medical University, China She graduated from Shandong First Medical University with a Bachelor of Clinical Medicine and a Master of Science. She received her Ph.D. from Shandong University. Afterwards, she did a two-year postdoctoral research at Fudan University. Up to now, she has published more than 30 academic papers in international scientific index journals.
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Gerhard Schmalz
PhD, University Leipzig, Germany He obtained his BDS, MDS, and PhD from the University of Leipzig, one of the oldest universities in Germany. He is currently working as an assistant professor and senior physician at the dental faculty of the University of Leipzig. He has been invited to open and lead many special issues in many journals, including MDPI, Hindawi, and Frontiers. He has an h-index of 16 and has published more than 100 papers.
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Aneesha Acharya
PhD, Dr D Y Patil Dental College and Hospital, India She obtained her BDS from Government Dental College and Hospital, Mumbai, one of the oldest dental schools in India. She obtained an MDS in periodontology from Government Dental College and Hospital, Ahmedabad. After that, she worked as a teaching faculty in Dr D Y Patil Dental College Hospital, Pimpri, Pune, and serves as a professor. She completed the ITI Scholarship and a PhD in implant dentistry at the University of Hong Kong, where is she currently affiliated as an Honorary Clinical Assistant Professor.
Articles (50 in this collection)
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A real-world study of active vitamin D as a prognostic marker in patients with sarcoma
Authors (first, second and last of 6)
- Lingyun Zhang
- Wei Li
- Yuhong Zhou
- Content type: Research
- Open Access
- Published: 29 August 2024
- Article: 384
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A cellular senescence-related signature for predicting prognosis, immunotherapy response, and candidate drugs in patients treated with transarterial chemoembolization (TACE)
Authors (first, second and last of 8)
- Ning He
- Wenjing Zhao
- Hui Zhao
- Content type: Analysis
- Open Access
- Published: 08 July 2024
- Article: 271
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Insights into the prognostic value and immunological role of CD74 in pan-cancer
Authors (first, second and last of 5)
- Zebiao Liu
- Mingquan Chen
- Wenli Zhao
- Content type: Research
- Open Access
- Published: 11 June 2024
- Article: 222
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Pan-cancer analysis for the prognostic and immunological role of CD47: interact with TNFRSF9 inducing CD8 + T cell exhaustion
Authors (first, second and last of 14)
- Hongxin Liang
- Yong Zheng
- Haiyu Zhou
- Content type: Analysis
- Open Access
- Published: 08 May 2024
- Article: 149
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Immune-related LncRNAs scores predicts chemotherapeutic responses and prognosis in cervical cancer patients
Authors (first, second and last of 6)
- Weijie Tian
- Songsong Tan
- Dan Zi
- Content type: Research
- Open Access
- Published: 14 April 2024
- Article: 119
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Outcomes of thyroidectomy for secondary thyroid malignancies, a single center experience
Authors (first, second and last of 4)
- Yunushan Furkan Aydoğdu
- Emre Gülçek
- Hasan Bostancı
- Content type: Research
- Open Access
- Published: 04 April 2024
- Article: 104
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Identification of a disulfidptosis-related lncRNA signature for the prognostic and immune landscape prediction in head and neck squamous cell carcinoma
Authors (first, second and last of 5)
- Zhengyu Wei
- Chongchang Zhou
- Zhisen Shen
- Content type: Research
- Open Access
- Published: 14 March 2024
- Article: 75
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A programmed cell death-related gene signature to predict prognosis and therapeutic responses in liver hepatocellular carcinoma
Authors (first, second and last of 4)
- Xinyu Gu
- Jie Pan
- Liushun Feng
- Content type: Research
- Open Access
- Published: 11 March 2024
- Article: 71
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The impact of radiomics in the management of soft tissue sarcoma
Authors (first, second and last of 7)
- Riccardo De Angelis
- Roberto Casale
- Maria Antonietta Bali
- Content type: Review
- Open Access
- Published: 05 March 2024
- Article: 62
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Unveiling NUSAP1 as a common gene signature linking chronic HBV infection and HBV-related HCC
Authors (first, second and last of 4)
- Jiao Meng
- Zhenkun Yang
- Jian Zou
- Content type: Research
- Open Access
- Published: 05 March 2024
- Article: 61
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Comprehensive analysis of T cell exhaustion related signature for predicting prognosis and immunotherapy response in HNSCC
Authors (first, second and last of 5)
- Wei Zhang
- Mei Qu
- Ya Hu
- Content type: Research
- Open Access
- Published: 02 March 2024
- Article: 56
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Comprehensive analysis of DNA methylation gene expression profiles in GEO dataset reveals biomarkers related to malignant transformation of sinonasal inverted papilloma
Authors (first, second and last of 6)
- Li Mu
- Shun Hu
- Sheng Zhang
- Content type: Research
- Open Access
- Published: 01 March 2024
- Article: 53
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Expression and prognosis analysis of TBX2 subfamily in human lung carcinoma
Authors (first, second and last of 5)
- Rui Mi
- Qiubo Wang
- Yuan Ji
- Content type: Research
- Open Access
- Published: 27 February 2024
- Article: 51
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Current and future of immunotherapy for thyroid cancer based on bibliometrics and clinical trials
Authors (first, second and last of 6)
- Ke Wang
- Ying Zhang
- Rui Guo
- Content type: Review
- Open Access
- Published: 25 February 2024
- Article: 50
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Comprehensive pan-carcinoma analysis of ITGB1 distortion and its potential clinical significance for cancer immunity
Authors (first, second and last of 5)
- Yuchang Fei
- Yulun Wu
- Lei Pan
- Content type: Research
- Open Access
- Published: 24 February 2024
- Article: 47
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A novel prognostic model of breast cancer based on cuproptosis-related lncRNAs
Authors (first, second and last of 5)
- Feixiang Li
- Yongyan Yang
- Yonghao Yu
- Content type: Research
- Open Access
- Published: 14 February 2024
- Article: 35
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Exploring the frontiers: tumor immune microenvironment and immunotherapy in head and neck squamous cell carcinoma
Authors
- Shaokun Liu
- Ru Wang
- Jugao Fang
- Content type: Review
- Open Access
- Published: 31 January 2024
- Article: 22
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Characterization of hypoxia-responsive states in ovarian cancer to identify hot tumors and aid adjuvant therapy
Authors (first, second and last of 4)
- Minghui Cao
- Liwei Xiao
- Jiaming Huang
- Content type: Research
- Open Access
- Published: 31 January 2024
- Article: 23
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Mitophagy genes in ovarian cancer: a comprehensive analysis for improved immunotherapy
Authors (first, second and last of 9)
- Wenting He
- Jieping Chen
- Jihong Liu
- Content type: Research
- Open Access
- Published: 01 December 2023
- Article: 221
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Dynamic estimates of survival in oncocytic cell carcinoma of the thyroid
Authors (first, second and last of 5)
- Yang Shi
- Yuenan Zheng
- Ping Zhang
- Content type: Research
- Open Access
- Published: 30 November 2023
- Article: 217
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Deep-learning-based survival prediction of patients with lower limb melanoma
Authors (first, second and last of 11)
- Jinrong Zhang
- Hai Yu
- Liehua Deng
- Content type: Research
- Open Access
- Published: 30 November 2023
- Article: 218
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Mapping the immunological battlefield in gastric cancer: prognostic implications of an immune gene expression signature
Authors (first, second and last of 5)
- Xianhong Meng
- Daxiu Wang
- Jiwu Han
- Content type: Research
- Open Access
- Published: 24 November 2023
- Article: 212
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Comparison of clinical characteristics and prognosis between type I and type II endometrial cancer: a single-center retrospective study
Authors (first, second and last of 6)
- Yuanpei Wang
- Yi Sun
- Fang Ren
- Content type: Research
- Open Access
- Published: 23 November 2023
- Article: 211
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Novel diagnostic biomarkers of oxidative stress, immune- infiltration characteristics and experimental validation of SERPINE1 in colon cancer
Authors (first, second and last of 8)
- Kaisheng Yuan
- Di Hu
- Cunchuan Wang
- Content type: Research
- Open Access
- Published: 18 November 2023
- Article: 206
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Geriatric nutritional risk index as a prognostic marker of first-line immune checkpoint inhibitor combination therapy in patients with renal cell carcinoma: a retrospective multi-center study
Authors (first, second and last of 11)
- Shogo Watari
- Satoshi Katayama
- Motoo Araki
- Content type: Research
- Open Access
- Published: 16 November 2023
- Article: 204
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A gene signature predicting prognosis of patients with lower-grade gliomas receiving temozolomide therapy
Authors (first, second and last of 5)
- Yanzhi Wan
- Guangqi Li
- Xuelei Ma
- Content type: Research
- Open Access
- Published: 13 November 2023
- Article: 202
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Identification of m6A-associated genes as prognostic and immune-associated biomarkers in Wilms tumor
Authors (first, second and last of 7)
- Yingquan Zhuo
- Wengqi Zhang
- Huajian Gu
- Content type: Research
- Open Access
- Published: 08 November 2023
- Article: 201
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The genes regulating sensitivity of tumor cells to T cell-mediated killing: could they be potential personalized immunotherapeutic targets in head and neck squamous cell carcinoma?
Authors (first, second and last of 4)
- Shaonan Hu
- Heng Duan
- Shaohong Huang
- Content type: Research
- Open Access
- Published: 05 November 2023
- Article: 199
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Nomogram development and external validation for predicting overall survival and cancer-specific survival in patients with primary retroperitoneal sarcoma: a retrospective cohort study
Authors (first, second and last of 11)
- Jialiang Zheng
- Aobo Zhuang
- Wengang Li
- Content type: Research
- Open Access
- Published: 01 November 2023
- Article: 197
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A comprehensive prognostic score for head and neck squamous cancer driver genes and phenotype traits
Authors (first, second and last of 8)
- Wen Zeng
- Fangfang Xie
- Dechang Xu
- Content type: Research
- Open Access
- Published: 28 October 2023
- Article: 193
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A risk score model based on lipid metabolism-related genes could predict response to immunotherapy and prognosis of lung adenocarcinoma: a multi-dataset study and cytological validation
Authors (first, second and last of 8)
- Yangyang Lei
- Boxuan Zhou
- Minghui Wang
- Content type: Research
- Open Access
- Published: 24 October 2023
- Article: 188
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Prediction model of no-response before the first transarterial chemoembolization for hepatocellular carcinoma: TACF score
Authors (first, second and last of 11)
- Jia-Wei Zhong
- Dan-Dan Nie
- Si-Hai Chen
- Content type: Research
- Open Access
- Published: 17 October 2023
- Article: 184
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Exploring oncogenes for renal clear cell carcinoma based on G protein-coupled receptor-associated genes
Authors (first, second and last of 13)
- Chengcun Zhu
- Zhou Sun
- Baoluo Ma
- Content type: Research
- Open Access
- Published: 10 October 2023
- Article: 182
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Role of exosome-mediated molecules SNORD91A and SLC40A1 in M2 macrophage polarization and prognosis of ESCC
Authors (first, second and last of 4)
- Yang Xue
- Zhengyan Cheng
- Xing Chen
- Content type: Research
- Open Access
- Published: 23 September 2023
- Article: 177
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Development of a thyroid cancer prognostic model based on the mitophagy-associated differentially expressed genes
Authors (first, second and last of 7)
- Wencong Sun
- Xinhui Wang
- Meifang Xue
- Content type: Research
- Open Access
- Published: 14 September 2023
- Article: 173
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Integrating TCGA and single-cell sequencing data for colorectal cancer: a 10-gene prognostic risk assessment model
Authors (first, second and last of 10)
- Di Lu
- Xiaofang Li
- Bingxi Zhou
- Content type: Research
- Open Access
- Published: 13 September 2023
- Article: 168
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Re-immunotherapy with nivolumab plus ipilimumab in advanced non-small cell lung cancer patients previously treated with anti-programmed death-1 and/or anti-programmed death ligand-1 antibodies
Authors (first, second and last of 9)
- Takuma Imakita
- Kohei Fujita
- Tadashi Mio
- Content type: Research
- Open Access
- Published: 31 August 2023
- Article: 163
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Senescence-associated secretory phenotype constructed detrimental and beneficial subtypes and prognostic index for prostate cancer patients undergoing radical prostatectomy
Authors (first, second and last of 6)
- Dechao Feng
- Jie Wang
- Chi Zhang
- Content type: Research
- Open Access
- Published: 25 August 2023
- Article: 155
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Classification and function of γδT cells and its research progress in anti-glioblastoma
Authors (first, second and last of 4)
- Yujuan Zhao
- Renhong Zhu
- Keqiang Wang
- Content type: Review
- Open Access
- Published: 19 August 2023
- Article: 150
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Case report: a successful treatment with immune checkpoint inhibitors was associated with severe dermatologic toxicities in a patient with double primary malignancies
Authors (first, second and last of 8)
- Xi Li
- Yi Lei
- Hu Zhang
- Content type: Case Report
- Open Access
- Published: 08 August 2023
- Article: 146
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The activity of cuproptosis pathway calculated by AUCell algorithm was employed to construct cuproptosis landscape in lung adenocarcinoma
Authors (first, second and last of 8)
- Weixian Lin
- Jiaren Wang
- Zemao Zheng
- Content type: Research
- Open Access
- Published: 23 July 2023
- Article: 135
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PTEN-related risk classification models for predicting prognosis and immunotherapy response of hepatocellular carcinoma
Authors (first, second and last of 6)
- Lu Cao
- Xiaoqian Ma
- Wei Wang
- Content type: Research
- Open Access
- Published: 20 July 2023
- Article: 134
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Veillonella parvula promotes the proliferation of lung adenocarcinoma through the nucleotide oligomerization domain 2/cellular communication network factor 4/nuclear factor kappa B pathway
Authors (first, second and last of 8)
- Wen Zeng
- Yuhuan Wang
- Shudong Ma
- Content type: Research
- Open Access
- Published: 14 July 2023
- Article: 129
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A pan-cancer analysis for the oncogenic role of cyclin-dependent kinase inhibitor 1B in human cancers
Authors (first, second and last of 10)
- Hao Huang
- Duoliang Qiu
- Fengyun Zhong
- Content type: Research
- Open Access
- Published: 11 July 2023
- Article: 126
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Construction of a novel nomogram based on competing endogenous RNAs and tumor-infiltrating immune cells for prognosis prediction in elderly patients with colorectal cancer
Authors (first, second and last of 6)
- Zhimin Tao
- Bo Li
- Yaowu Du
- Content type: Research
- Open Access
- Published: 10 July 2023
- Article: 125
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MTHFR act as a potential cancer biomarker in immune checkpoints blockades, heterogeneity, tumor microenvironment and immune infiltration
Authors
- Jianheng Peng
- Zhongjun Wu
- Content type: Research
- Open Access
- Published: 24 June 2023
- Article: 112
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M1A and m7G modification-related genes are potential biomarkers for survival prognosis and for deciphering the tumor immune microenvironment in esophageal squamous cell carcinoma
Authors (first, second and last of 7)
- Ruixi Wang
- Xingyuan Cheng
- Mian Xi
- Content type: Research
- Open Access
- Published: 14 June 2023
- Article: 99
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FIBP is a prognostic biomarker and correlated with clinicalpathological characteristics and immune infiltrates in acute myeloid leukemia
Authors (first, second and last of 5)
- Muya Ma
- Lingling Xu
- Gang Chi
- Content type: Research
- Open Access
- Published: 13 June 2023
- Article: 97
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A demonstration based on multi-omics transcriptome sequencing data revealed disulfidptosis heterogeneity within the tumor microenvironment of esophageal squamous cell carcinoma
Authors (first, second and last of 9)
- Fuxing Liu
- Donglan Yuan
- Hong Yu
- Content type: Research
- Open Access
- Published: 12 June 2023
- Article: 96