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Advances in Bioinformatics and Computational Biology

13th Brazilian Symposium on Bioinformatics, BSB 2020, São Paulo, Brazil, November 23–27, 2020, Proceedings

  • Conference proceedings
  • © 2020

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Overview

Editors:
  1. João C. Setubal

    1. University of São Paulo, São Paulo, Brazil

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    You can also search for this editor in PubMed   Google Scholar

  2. Waldeyr Mendes Silva

    1. Instituto Federal de Goiás, Formosa, Brazil

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Part of the book series: Lecture Notes in Computer Science (LNCS, volume 12558)

Part of the book sub series: Lecture Notes in Bioinformatics (LNBI)

Included in the following conference series:

Conference proceedings info: BSB 2020.

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About this book

This book constitutes the refereed proceedings of the Brazilian Symposium on Bioinformatics, BSB 2020, held in São Paulo, Brazil, in November 2020. Due to COVID-19 pandemic the conference was held virtually
The 20 revised full papers and 5 short papers were carefully reviewed and selected from 45 submissions. The papers address a broad range of current topics in computational biology and bioinformatics.


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Table of contents (25 papers)

  1. Front Matter

    Pages i-xiii
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  2. A Classification of de Bruijn Graph Approaches for De Novo Fragment Assembly

    • Elvismary Molina de Armas, Maristela Holanda, Daniel de Oliveira, Nalvo F. Almeida, Sérgio Lifschitz
    Pages 1-12
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  3. Redundancy Treatment of NGS Contigs in Microbial Genome Finishing with Hashing-Based Approach

    • Marcus Braga, Kenny Pinheiro, Fabrício Araújo, Fábio Miranda, Artur Silva, Rommel Ramos
    Pages 13-24
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  4. Efficient Out-of-Core Contig Generation

    • Julio Omar Prieto Entenza, Edward Hermann Haeusler, Sérgio Lifschitz
    Pages 25-37
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  5. In silico Pathogenomic Analysis of Corynebacterium Pseudotuberculosis Biovar Ovis

    • Iago Rodrigues Blanco, Carlos Leonardo Araújo, Adriana Carneiro Folador
    Pages 38-49
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  6. Assessing the Sex-Related Genomic Composition Difference Using a k-mer-Based Approach: A Case of Study in Arapaima gigas (Pirarucu)

    • Renata Lilian Dantas Cavalcante, Jose Miguel Ortega, Jorge Estefano Santana de Souza, Tetsu Sakamoto
    Pages 50-56
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  7. COVID-19 X-ray Image Diagnostic with Deep Neural Networks

    • Gabriel Oliveira, Rafael Padilha, André Dorte, Luis Cereda, Luiz Miyazaki, Maurício Lopes et al.
    Pages 57-68
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  8. Classification of Musculoskeletal Abnormalities with Convolutional Neural Networks

    • Guilherme Tiaki Sassai Sato, Leodécio Braz da Silva Segundo, Zanoni Dias
    Pages 69-80
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  9. Combining Mutation and Gene Network Data in a Machine Learning Approach for False-Positive Cancer Driver Gene Discovery

    • Jorge Francisco Cutigi, Renato Feijo Evangelista, Rodrigo Henrique Ramos, Cynthia de Oliveira Lage Ferreira, Adriane Feijo Evangelista, Andre C. P. L. F. de Carvalho et al.
    Pages 81-92
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  10. Unraveling the Role of Nanobodies Tetrad on Their Folding and Stability Assisted by Machine and Deep Learning Algorithms

    • Matheus Vitor Ferreira Ferraz, Wenny Camilla dos Santos Adan, Roberto Dias Lins
    Pages 93-104
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  11. Experiencing DfAnalyzer for Runtime Analysis of Phylogenomic Dataflows

    • Luiz Gustavo Dias, Marta Mattoso, Bruno Lopes, Daniel de Oliveira
    Pages 105-116
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  12. Sorting by Reversals and Transpositions with Proportion Restriction

    • Klairton Lima Brito, Alexsandro Oliveira Alexandrino, Andre Rodrigues Oliveira, Ulisses Dias, Zanoni Dias
    Pages 117-128
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  13. Heuristics for Breakpoint Graph Decomposition with Applications in Genome Rearrangement Problems

    • Pedro Olímpio Pinheiro, Alexsandro Oliveira Alexandrino, Andre Rodrigues Oliveira, Cid Carvalho de Souza, Zanoni Dias
    Pages 129-140
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  14. Center Genome with Respect to the Rank Distance

    • Priscila Biller, João Paulo Pereira Zanetti, João Meidanis
    Pages 141-149
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  15. ImTeNet: Image-Text Classification Network for Abnormality Detection and Automatic Reporting on Musculoskeletal Radiographs

    • Leodécio Braz, Vinicius Teixeira, Helio Pedrini, Zanoni Dias
    Pages 150-161
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  16. A Scientometric Overview of Bioinformatics Tools in the Pseudomonas Putida Genome Study

    • Alex Batista Trentin, Beatriz Thomas Metzner, Glecio Oliveira Barros, Deborah Catharine de Assis Leite
    Pages 162-167
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  17. Polysome-seq as a Measure of Translational Profile from Deoxyhypusine Synthase Mutant in Saccharomyces cerevisiae

    • Fernanda Manaia Demarqui, Ana Carolina Silva Paiva, Mariana Marchi Santoni, Tatiana Faria Watanabe, Sandro Roberto Valentini, Cleslei Fernando Zanelli
    Pages 168-179
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  18. Anti-CD3 Stimulated T Cell Transcriptome Reveals Novel ncRNAs and Correlates with a Suppressive Profile

    • Manuela M. do Almo, Isabel G. Sousa, Waldeyr Mendes Cordeiro da Silva, Thomas Gatter, Peter F. Stadler, Steve Hoffmann et al.
    Pages 180-191
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  19. A Simplified Complex Network-Based Approach to mRNA and ncRNA Transcript Classification

    • Murilo Montanini Breve, Fabrício Martins Lopes
    Pages 192-203
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  20. A Systems Biology Driven Approach to Map the EP300 Interactors Using Comprehensive Protein Interaction Network

    • Shivananda Kandagalla, Maria Grishina, Vladimir Potemkin, Sharath Belenahalli Shekarappa, Pavan Gollapalli
    Pages 204-214
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Other volumes

  1. Advances in Bioinformatics and Computational Biology

Editors and Affiliations

  • University of São Paulo, São Paulo, Brazil

    João C. Setubal

  • Instituto Federal de Goiás, Formosa, Brazil

    Waldeyr Mendes Silva

Bibliographic Information

  • Book Title: Advances in Bioinformatics and Computational Biology

  • Book Subtitle: 13th Brazilian Symposium on Bioinformatics, BSB 2020, São Paulo, Brazil, November 23–27, 2020, Proceedings

  • Editors: João C. Setubal, Waldeyr Mendes Silva

  • Series Title: Lecture Notes in Computer Science

  • DOI: https://doi.org/10.1007/978-3-030-65775-8

  • Publisher: Springer Cham

  • eBook Packages: Computer Science, Computer Science (R0)

  • Copyright Information: Springer Nature Switzerland AG 2020

  • Softcover ISBN: 978-3-030-65774-1Published: 20 December 2020

  • eBook ISBN: 978-3-030-65775-8Published: 19 December 2020

  • Series ISSN: 0302-9743

  • Series E-ISSN: 1611-3349

  • Edition Number: 1

  • Number of Pages: XIII, 272

  • Number of Illustrations: 20 b/w illustrations, 63 illustrations in colour

  • Topics: Bioinformatics

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