Abstract
Plastids have an interesting transcription machinery that makes it possible to study the interplay of mono- and multisubunit RNA polymerases (RNAPs) during intricate organelle biogenesis, requiring the concerted expression of genes located in different compartments of the cell. The past decade has been marked by a breakthrough in studies of chloroplast RNAPs. Nucleus-encoded monosubunit RNAP (NEP) was discovered; a nuclear gene family was found to code for σ subunits of plastid-encoded multisubunit RNAP (PEP); mutants knocked-out in PEP subunit genes were obtained; a reorganization of PEP was observed during plastid biogenesis; and a hypothesis was advanced to describe the division of functions between NEP and PEP. The review considers recent data on the organization, functions, and evolution of plastid RNAPs.
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REFERENCES
Shematorova E.K., Shpakovsky G.V. 2002. Structure and functions of eukaryotic DNA-dependent RNA polymerase I. Mol. Biol. 36, 1–17.
Pfannschmidt T., Link G. 1994. Separation of two classes plastid DNA-dependent RNA polymerases that are differently expressed in mustard. Plant Mol. Biol. 25, 69–81.
Rajasekhar V.K., Sun E., Meeker R., Wu B.W., Tewari K.K. 1991. Highly purified pea chloroplast RNA polymerase transcribes both rRNA and mRNA genes. Eur. J. Biochem. 195, 215–228.
Suzuki J.Y., Ytterberg J., Beardslee T.A., Allison L.A., Wijk K.J., Maliga P. 2004. Affinity purification of the tobacco plastid RNA polymerase and in vitro reconstitution of the holoenzyme. Plant J. 40, 164–172.
Allison L.A., Simon L.D., Maliga P. 1996. Deletion of rpoB reveals a second distinct transcription system in plastids of higher plants. EMBO J. 15, 2802–2809.
Serino G., Maliga P. 1998. RNA polymerase subunits encoded by the plastid rpo genes are not shared with the nucleus encoded plastid enzyme. Plant Physiol. 117, 1165–1170.
DeSantis-Maciossek G., Kofer W., Bock A., Rudiger W., Koop H.U., Herrmann R.G. 1999. Targeted disruption of the plastid RNA polymerase genes rpoA, B and C1: Molecular biology, biochemistry and ultrastructure. Plant J. 18, 477–489.
Wolfe K.H., Morden C.W., Palmer J.D. 1992. Function and evolution of a minimum plastid genome from a nonphotosynthetic parasitic plant. Proc. Natl. Acad. Sci. USA. 89, 10648–10652.
Berg S., Krupinska K., Krause K. 2003. Plastids of three Cuscuta species differing in plastid coding capacity have a common parasite-specific RNA composition. Planta. 218, 135–142.
Krause K., Berg S., Krupinska K. 2003. Plastid transcription in the holoparasitic plant genus Cuscuta: parallel loss of the rrn16 PEP-promoter and of the rpoA and rpoB genes coding for the plastid-encoded RNA polymerase. Planta. 216, 815–823.
Sakai A., Saito C., Inada N., Kuroiwa T. 1998. Transcriptional activities of the chloroplast-nuclei and proplastid-nuclei isolated from tobacco exhibit different sensitivities to tagetitoxin: Implication of the presence of distinct RNA polymerases. Plant Cell Physiol. 39, 928–934.
Bergsland K.J., Haselkorn R. 1991. Evolutionary relationships among eubacteria, cyanobacteria, and chloroplasts: Evidence from the rpoC1 gene of Anabaena sp. strain PCC7120. J. Bacteriol. 173, 3446–3455.
Kaneko T., Sato S., Kotani H., Tanaka A., Asamizu E., Nakamura Y., Miyajima N., Hirosawa M., Sugiura M., Sasamoto S., Kimura T., Hosouchi T., Matsuno A., Muraki A., Nakazaki N., Naruo K., Okumura S., Shimpo S., Takeuchi C., Wada T., Watanabe A., Yamada M., Yasuda M., Tabata S. 1996. Sequence analysis of the genome of the unicellular cyanobacterium Synechocystis sp. strain PCC6803: 2. Sequence determination of the entire genome and assignment of potential protein-coding regions. DNA Res. 3, 109–136.
Sugiura Ch., Kobayashi Yu., Aoki S., Sugita Ch., Sugita M. 2003. Complete chloroplast DNA sequence of the moss Physcomitrella patens: Evidence for the loss and relocation of rpoA from the chloroplast to the nucleus. Nucleic Acids Res. 31, 5324–5331.
Minakhin L., Bhagat S., Brunning A., Campbell E.A., Darst S.A., Ebright R.H., Severinov K. 2001. Bacterial RNA polymerase subunit ω and eucaryotic RNA polymerase subunit RPB6 are sequence, structural, and functional homologs and promote RNA polymerase assembly. Proc. Natl. Acad. Sci. USA. 98, 892–897.
Hu J., Bogorad L. 1990. Maize chloroplast RNA polymerase: The 180-, 120-, and 38-kilodalton polypeptides are encoded in chloroplast genes. Proc. Natl. Acad. Sci. USA. 87, 1531–1535.
Hu J., Troxler R.F., Bogorad L. 1991. Maize chloroplast RNA polymerase: The 78-kilodalton polypeptide is encoded by the plastidic rpoC1 gene. Nucleic Acids Res. 19, 3431–3434.
Severinov K., Mustaev A., Kukarin A., Muzzin O., Bass I., Darst S.A., Goldfarb A. 1996. Structural modules of the large subunits of RNA polymerase. J. Biol. Chem. 271, 27969–27974.
Chen Z., Muthukrishnan S., Liang G.H., Schertz K.F., Hart G.E. 1993. A chloroplast DNA deletion located in RNA polymerase gene rpoC2 in CMS lines of sorghum. Mol. Gen. Genet. 236, 251–249.
Sugiura M. 1992. The chloroplast genome. Plant Mol. Biol. 19, 149–168.
Kanno A., Hirai A. 1993. A transcription map of the chloroplast genome from rice (Oryza sativa). Curr. Genet. 23, 166–174.
Downing W.L., Dennis P.P. 1987. Transcription products from the rplKAJL-rpoBC gene cluster. J. Mol. Biol. 194, 609–620.
Ishihama A. 2000. Functional modulation of Escherichia coli RNA polymerase. Annu. Rev. Microbiol. 54, 499–518.
Ozoline O.N., Purtov Yu.A., Brok-Volchanski A.S., Deev A.A., Lukyanov V.I. 2004. Specificity of DNA-protein interactions within transcription complexes of Escherichia coli. Mol. Biol. 38, 786–797.
Imamura S., Yoshihara S., Nakano S., Shiozaki N., Yamada A., Tanaka K., Takahashi H., Asayama M., Shirai M. 2003. Purification, characterization, and gene expression of all sigma factors of RNA polymerase in a cyanobacterium. J. Mol. Biol. 325, 857–872.
Kestermann M., Neukirchen S., Kloppstech K., Link G. 1998. Sequence and expression characteristics of a nuclear-encoded chloroplast sigma factor from mustard (Sinapis alba). Nucleic Acids Res. 26, 2747–2753.
Homann A., Link G. 2003. DNA-binding and transcription characteristics of three cloned sigma factors from mustard (Sinapis alba L.) suggest overlapping and distinct roles in plastid gene expression. Eur. J. Biochem. 270, 1288–1300.
Hanaoka M, Kanamaru K, Takahashi H, Tanaka K. 2003. Molecular genetic analysis of chloroplast gene promoters dependent on SIG2, a nucleus-encoded sigma factor for the plastid-encoded RNA polymerase, in Arabidopsis thaliana. Nucleic Acids Res. 31, 7090–7098.
Kanamaru K., Nagashima A., Fujiwara M., Shimada H., Shirano Y., Nakabayashi K., Shibata D., Tanaka K., Takahashi H. 2001. An Arabidopsis sigma factor (SIG2)-dependent expression of plastid encoded tRNAs in chloroplasts. Plant Cell Physiol. 42, 1034–1043.
Nagashima A., Hanaoka M., Shikanai T., Fujiwara M., Kanamaru K., Takahashi H., Tanaka K. 2004. The multiple-stress responsive plastid sigma factor, SIG5, directs activation of the psbD blue light-responsive promoter (BLRP) in Arabidopsis thaliana. Plant Cell Physiol. 45, 357–368.
Morikawa K., Shiina T., Murakami S., Toyoshima Y. 2002. Novel nuclear-encoded proteins interacting with a plastid sigma factor, Sig1, in Arabidopsis thaliana. FEBS Lett. 514, 300–304.
Hara K., Morita M., Takahashi R., Sugita M., Kato S., Aoki S. 2001. Characterization of two genes, Sig1 and Sig2, encoding distinct plastid sigma factors (1) in the moss Physcomitrella patens: Phylogenetic relationships to plastid sigma factors in higher plants. FEBS Lett. 499, 87–91.
Hara K., Sugita M., Aoki S. 2001. Cloning and characterization of the cDNA for a plastid sigma factor from the moss Physcomitrella patens. Biochem. Biophys. Acta. 1517, 302–306.
Oikawa K., Tanaka K., Takahashi H. 1998. Two types of differently photo-regulated nuclear genes that encode sigma factors for a chloroplast RNA polymerase in the red alga Cyanidium caldarium strain RK-1. Gene. 210, 277–285.
Severinov K., Soushko M., Goldfarb A., Nikiforov V. 1993. Rifampicin region revisited. New rifampicin-resistant and streptolydigin-resistant mutants in the β subunit of Escherichia coli RNA polymerase. J. Biol. Chem. 268, 14820–14825.
Surzycki S.J. 1969. Genetic functions of the chloroplasts of Chlamydomonas reinchardtii: Effect of rifampin on chloroplast DNA-dependent RNA polymerase. Proc. Natl. Acad. Sci. USA. 63, 1327–1334.
Pfannschmidt T., Link G. 1997. The A and B form of plastid DNA-dependent RNA polymerases from mustard (Sinapis alba L.) transcribe the same genes in a different developmental context. Mol. Gen. Genet. 257, 35–44.
Wegrzyn A., Szalewska-Palasz A., Blaszczak A., Liberek K., Wegrzyn G. 1998. Differential inhibition of transcription from σ70-and σ32-dependent promoters by rifampicin. FEBS Lett. 440, 172–174.
Pfannschmidt T., Ogrzewalla K., Baginsky S., Sickmann A., Meyer H.E., Link G. 2000. The multisubunit RNA polymerase A from mustard (Sinapis alba L.): Integration of procaryotic core into a larger complex with organelle specific functions. Eur. J. Biochem. 267, 253–261.
Mathews D.E., Durbin R.D. 1990. Tagetitoxin inhibits RNA synthesis directed by RNA polymerase from chloroplasts and Escherichia coli. J. Biol. Chem. 265, 493–498.
Bligny M., Courtois F., Thaminy S., Chang C.-C., Lagrange T., Baruah-Wolff J., Stern D.B., Lerbs-Mache S. 2000. Regulation of plastid rDNA transcription by interaction of CDF2 with two different RNA polymerases. EMBO J. 19, 1851–1860.
Steinberg T.H., Mathews D.E., Durbin R.D., Burgess R.R. 1990. Tagetitoxin: A new inhibitor of eucaryotic transcription by RNA polymerase III. J. Biol. Chem. 265, 499–505.
Steinberg T.H., Burgess R.R. 1992. Tagetitoxin inhibition of RNA polymerase III transcription results from enchanced pausing at discrete sites and is template-dependent. J. Biol. Chem. 267, 20204–20211.
Knorre D.G. 1999. RNA polymerase II. Mol. Biol. 32, 129–134.
Paule M.R., White R.J. 2000. Survey and summary: Transcription by RNA polymerase I and III. Nucleic Acids Res. 28, 1283–1298.
Baginsky S., Tiller K., Link G. 1997. Transcription factor phosphorylation by a protein kinase associated with chloroplast RNA polymerase from mustard (Sinapis alba). Plant Mol. Biol. 34, 181–189.
Baginsky S., Tiller K., Pfannschmidt T., Link G. 1999. PTK, the chloroplast RNA polymerase-associated protein kinase from mustard (Sinapis alba), mediates redox control of plastid in vitro transcription. Plant Mol. Biol. 39, 1013–1023.
Ogrzewalla K., Piotrowski M., Reinbothe S., Link G. 2002. The plastid transcription kinase from mustard (Sinapis alba L.). A nuclear encoded CK2 type chloroplast enzyme with redox-sensitive function. Eur. J. Biochem. 269, 3329–3337.
Tiller K., Link G. 1993. Phosphorylation and dephosphorylation affect functional characteristics of chloroplast and etioplast transcription system from mustard (Sinapis alba). EMBO J. 12, 1745–1753.
Baumgartner B.J., Rapp J.C., Mullet J.E. 1993. Plastid genes encoding the transcription/translation apparatus are differentially transcribed early in barley (Hordeum vulgare) chloroplast development (Evidence for selective stabilization of psbA mRNA). Plant Physiol. 101, 781–791.
Inada H., Kusumi K., Nishimura M., Iba K. 1996. Specific expression of the chloroplast gene for RNA polymerase (rpoB) at an early stage of leaf development in rice. Plant Cell Physiol. 37, 229–232.
Emanuel C., Weihe A., Graner A., Hess W.R., Borner T. 2004. Chloroplast development affects expression of phage-type RNA polymerases in barley leaves. Plant J. 38, 460–472.
Satoh J., Baba K., Nakahira Y., Tsunoyama Y., Shiina T., Toyoshima Y. 1999. Developmental stage-specific multi-subunit plastid RNA polymerase (PEP) in wheat. Plant J. 18, 407–415.
Eisermann A., Tiller K., Link G. 1990. In vitro transcription and DNA binding characteristics of chloroplast end etioplast extract from mustard (Sinapis alba) indicate differential usage of psbA promoter. EMBO J. 9, 3981–3987.
Gamble P.E., Mullet J.E. 1989. Blue light regulates the accumulation of two psbD-psbC transcripts in barley chloroplasts. EMBO J. 8, 2785–2794.
Nakahira Y., Baba K., Yoneda A., Shiina T., Toyoshima Y. 1998. Circadian-regulated transcription of the psbD light-responsive promoter in wheat chloroplsts. Plant Physiol. 118, 1079–1088.
Kim M., Thum K.E., Morishige D.T., Mullet J.E. 1999. Detailed architecture of the barley chloroplast psbD-psbC blue light-responsive promoter. J. Biol. Chem. 274, 4684–4692.
Thum K.E., Kim M., Morishige D.T., Eibl C., Koop H.-U., Mullet J.E. 2001. Analysis of barley chloroplast psbD light responsive promoter elements in transplastomic tobacco. Plant. Mol. Biol. 47, 353–366.
Chen L.J., Orozco E.M., Jr. 1988. Recognition of prokaryotic transcription terminators by spinach chloroplast RNA polymerase. Nuceic Acids Res. 16, 8411–8431.
Gatenby A.A., Castleton J.A., Saul M.W. 1981. Expresssion in E. coli of Z. mays and wheat chloroplast genes for large subunit of ribulose biphosphate carboxylase. Nature. 291, 117–121.
Bradley D., Gatenby A.A. 1985. Mutational analysis of the maize chloroplast ATPase-β subunit gene promoter: The isolation of promoter mutants in E. coli and their characterisation in a chloroplast in vitro transcription system. EMBO J. 4, 3641–3648.
Boyer S.K., Mullet J. 1986. Characterisation of Pisum sativum chloropast psbA transcript produced in vivo, in vitro and in E. coli. Plant. Mol. Biol. 6, 229–243.
Kim M., Mullet J.E. 1995. Identification of a sequence-specific DNA binding factor required for transcription of the barley chloroplast blue light-responsive psbD-psbC promoter. Plant Cell. 7, 1445–1457.
Beardslee T.A., Roy-Chowdhury S., Jaiswal P., Buhot L., Lerbs-Mache S., Stern D.B., Allison L.A. 2002. A nucleus-encoded maize protein with sigma factor activity accumulates in mitochondria and chloroplasts. Plant J. 31, 199–209.
Lerbs-Mache S. 2000. Regulation of rDNA transcription in plastids of higher plants. Biochimie. 82, 525–535.
Suzuki J.Y., Maliga P. 2000. Engineering of the rpl23 gene cluster to replace the plastid RNA polymerase alpha subunit with the Escherichia coli homologue. Curr. Genet. 38, 218–225.
Lerbs-Mache S. 1993. The 110-kDa polypeptide of spinach DNA-dependent RNA polymerase: Single-subunit enzyme or catalytic core of multimeric enzyme complexes? Proc. Natl. Acad. Sci. USA. 90, 5509–5513.
Hedtke B., Borner T., Weihe A. 1997. Mitochondrial and chloroplast phage-type RNA polymerases in Arabidopsis. Science. 277, 809–811.
Richter U., Kiessling J., Hedtke B., Decker E., Reski R., Borner T., Weihe A. 2002. Two RpoT genes of Physcomitrella patens encode phage type RNA polymerases with dual targeting to mitochondria and plastids. Gene. 290, 95–105.
Hedtke B., Borner T., Weihe A. 2000. One RNA polymerase serving two genomes. EMBO Rep. 1, 435–440.
Hedtke B., Legen J., Weihe A., Herrmann R.G., Borner T. 2002. Six active phage-type RNA polymerase genes in Nicotiana tabacum. Plant J. 30, 625–637.
Kobayashi Y., Dokiya Y., Sugita M. 2001. Dual targeting of phage-type RNA polymerase to both mitochondria and plastids is due to alternative translation initiation in single transcripts. Biochem. Biophys. Res. Commun. 289, 1106–1113
Kobayashi Y., Dokiya Y., Kumazawa Y., Sugita M. 2002. Non-AUG translation initiation of mRNA encoding plastid-targeted phage-type RNA polymerase in Nicotiana sylvestris. Biochem. Biophys. Res. Commun. 299, 57–61.
Chang C.-C., Sheen J., Bligny M., Niwa Y., Lerbs-Mache S., Stern D.B. 1999. Functional analysis of two maize cDNA encoding T7-like RNA polymerases. Plant Cell. 11, 911–926.
Ikeda T.M., Gray M.W. 1999. Identification and characterization of T3/T7 bacteriophage-like RNA polymerase sequences in wheat. Plant. Mol. Biol. 40, 567–578.
Kusumi K., Yara A., Mitsui N., Tozawa Yu., Iba K. 2004. Characterisation of a rice nuclear-encoded plastid RNA polymerase gene OsRpoTp. Plant Cell Physiol. 45, 1194–1201.
Hajdukiewicz P.T.J., Allison L.A., Maliga P. 1997. The two RNA polymerase encoded by the nuclear and the plastid compartments transcribe distinct groups of genes in tobacco plastids. EMBO J. 16, 4041–4048.
Iratni R., Diedrich L., Harrak H., Bligny M., Lerbs-Mache S. 1997. Organ-specific transcription of the rrn-operon in spinach plastids. J. Biol.Chem. 272, 13676–13682.
Hedtke B., Meixner M., Gillandt S., Richter E., Borner T., Weihe A. 1999. Green fluorescent protein as a marker to investigate targeting of organellar RNA polymerases of higher plants in vivo. Plant J. 17, 557–561.
Vera A., Sugiura M. 1995. Chloroplast rRNA transcription from structurally different tandem promoters: An additional novel-type promoter. Curr. Genet. 27, 280–284.
Vera A., Hirose T., Sugiura M. 1996. A ribosomal protein gene (rpl32) from tobacco chloroplast DNA is transcribed from alternative promoters: Similarities in promoter region organization plastid housekeeping genes. Mol. Gen. Genet. 251, 518–525.
Goldschmidt-Clermont M. 1991. Transgenic expression of aminoglicoside adenine transferase in the chloroplast: A selectable marker for site-directed transformation of Chlamydomonas. Nucleic Acids Res. 19, 4083–4090.
Fisher N., Stampacchia O., Redding K., Rochaix J.D. 1996. Selectable marker recycling in the chloroplast. Mol. Gen. Genet. 251, 373–380.
Eberhard S., Drapier D., Wollman F.-A. 2002. Searching limiting steps in the expression of chloroplast-encoded proteins: Relations between gene copy number, transcription, transcript abundance and translation rate in the chloroplast of Chlamydomonas reinhardtii. Plant J. 31, 149–160.
Cermakian N., Ikeda T.M., Miramontes P., Lang B.F., Gray M.W., Cedergren R. 1997. On the evolution of the single-subunit RNA polymerases. J. Mol. Evol. 45, 671–681.
Hess W.R., Borner T. 1999. Organellar RNA polymerases of higher plants. Int. Rev. Cytol. 190. 1–59.
Baba K., Schmidt J., Espinosa-Ruiz A., Villarejo A., Shiina T., Gardestrom P., Sane A.P., Bhalerao R.P. 2004. Organellar gene transcription and early seedling development are affected in the rpoT2 mutant of Arabidopsis. Plant J. 38, 38–48.
Zhang X., Studier F.W. 1997. Mechanism of inhibition of bacteriophage T7 RNA polymerase by T7 lysozyme. J. Mol. Biol. 269, 10–27.
Han C.D., Patrie W., Polacco M., Coe E.H. 1993. Aberrations in plastid transcripts and deficiency of plastid DNA in striped and albino mutants in maize. Planta. 191, 552–563.
Hess W.R., Prombona A., Fieder B., Subramanian A.R., Borner T. 1993. Chloroplast rps15 and the rpoB/C1/C2 gene cluster are strongly transcribed in ribosome deficient plastids: Evidence for a functioning non-chloroplast encoded RNA polymerase. EMBO J. 12, 563–571.
Kabeya Y., Hashimoto K., Sato N. 2002. Identification and characterization of two phage-type RNA polymerase cDNAs in the moss Physcomitrella patens: Implication of recent evolution of nuclear encoded RNA polymerase of plastids in plants. Plant Cell Physiol. 43, 245–255.
Kobayashi Y, Dokiya Y, Sugiura M., Niwa Y., Sugita M. 2001. Genomic-organization and organ-specific expression of a nuclear gene encoding phage-type RNA polymerase in Nicotiana sylvestris. Gene. 279, 33–40.
Magee A.M., Kavanagh T.A. 2002. Plastid genes transcribed by the nucleus-encoded plastid RNA polymerase show increased transcript accumulation in transgenic plants expressing a chloroplast-localized phage T7 RNA polymerase. J. Exp. Bot. 53, 2341–2349.
Shadel G.S., Clayton D.A. 1993. Mitochondrial transcription initiation. Variation and coservation. J. Biol. Chem. 268, 16083–16086.
Ikeda T.M., Gray M.W. 1999. Characterization of a DNA-binding protein implicated in transcription in wheat mitochondria. Mol. Cell Biol. 19, 8113–8122.
Arabidopsis Genome Initiative. 2000. Analysis of the genome sequence of the flowering plant Arabidopsis thaliana. Nature. 408, 796–815.
Lu G., Moriyama E.N. 2004. Vector NTI, a balanced all-in-one sequence analysis suite. Brief. Bioinform. 5, 378–388.
Cermakian N., Ikeda T.M., Cedergren R., Gray M.W. 1997. Sequences homologous to yeast mitochondrial and bacteriophage T3 and T7 RNA polymerases are widespread throughout the eukaryotic lineage. Nucleic Acids Res. 24, 648–654.
Gray M.W. 1992. The endosymbiont hypothesis revisited. Int. Rev. Cytol. 141, 233–357.
Small I., Wintz H., Akashi K., Mireau H. 1998. Two birds with one stone: Gene that encode products targeted to two or more compartments. Plant Mol. Biol. 38, 265–277.
Cahoon A.B., Harris F.M., Stern D.B. 2004. Analyzing of developing plastids reveals two mRNA stability classes correlating with RNA polymerase type. EMBO Rep. 5, 801–806.
Krause K., Maier R.M., Kofer W., Krupinska K., Herrmann R.G. 2000. Disruption of plastid encoded RNA polymerase genes in tobacco: Expression of only a distinct set of genes is not based on selective transcription of the plastid chromosome. Mol. Gen. Genet. 263, 1022–1030.
Legen J., Kemp S., Krause K., Profanter B., Herrmann R.G., Maier R. 2002. Comparative analysis of plastid transcription profiles of entire plastid chromosomes from tobacco attributed to wild-type end PEP-deficient transcription machineries. Plant J. 31, 171–188.
Navarro J.A., Vera A., Flores R. 2000. A chloroplastic RNA polymerase resistant to tagetitoxin is involved in replication of avocado sunblotch viroid. Virology. 268, 218–225.
Nielsen B.L., Rajasekhar V.K., Tewari K.K. 1991. Pea chloroplast DNA primase: Characterization and role in initiation of replication. Plant Mol. Biol. 16, 1019–1034.
Romano L.G., Tamanoi F., Richardson C.C. 1981. Initiation of DNA replication at the primary origin of bacteriophage T7 by purified proteins: Requirement for T7 RNA polymerase. Proc. Natl. Acad. Sci. USA. 78, 4107–4111.
Edwards J.C., Levens D., Rabinowitz M. 1982. Analysis of transcriptional initiation of yeast mitochondrial DNA in a homologous in vitro transcription. Cell. 31, 337–346.
Schinkel A.H., Groot-Koerkamp M.J.A., Tabak H.F. 1988. Mitochondrial RNA polymerase of Saccharomyces cerevisiae: Composition and mechanism of promoter recognition. EMBO J. 7, 3255–3262.
Li Q.-S., Gupta J.D., Hunt A.G. 1998. Polynucleotide phosphorylase is a component of a novel plant poly(A) polymerase. J. Biol. Chem. 273, 17539–17543.
Yehudai-Resheff S., Hirsh M., Schuster G. 2001. Polynucleotide phosphorylase functions as both an exonuclease and a poly(A) polymerase in spinach chloroplasts. Mol. Cell. Biol. 21, 5408–5416.
Odintsova M.S., Yurina N.P. 2003. Plastid genomes of higher plants and fungi: Structure and finctions. Mol. Biol. 37, 768–783.
Kusumi K., Komori H., Satoh H., Iba K. 2000. Characterization of a zebra mutant of rice with increased susceptibility to light stress. Plant Cell Physiol. 41, 158–164.
Kusumi K., Mizutani A., Nishimura M., Iba K. 1997. A virescent gene VI determines the expression timing of plastid genes for transcription/translation apparatus during early leaf development in rice. Plant J. 12, 1241–1250.
Surpin M., Larkin R.M., Chory J. 2002. Signal transduction between the chloroplast and the nucleus. Plant Cell. 14, 327–338.
Lagrange T., Hakimi M.A., Pontier D., Courtois F., Alcaraz J.P., Grunwald D., Lam E., Lerbs-Mache S. 2003. Transcription factor IIB (TFIIB)-related protein (pBrp), a plant-specific member of the TFIIB-related protein family. Mol. Cell. Biol. 23, 3274–3286.
Zubko M.K., Day A. 2002. Differential regulation of genes transcribed by nucleus-encoded plastid RNA polymerase, and DNA amplification, within ribosome-deficient plastids in stable phenocopies of cereal albino mutants. Mol. Genet. Genomics. 267, 27–37.
Silhavy D., Maliga P. 1998. Mapping of promoters for the nuclear-encoded plastid RNA polymerase (NEP) in the iojap maize mutant. Curr. Genet. 33, 340–344.
Silhavy D., Maliga P. 1998. Plastid promoter utilization in a rice embryogenic cell culture. Curr. Genet. 34, 67–70.
Vogel J., Borner T., Hess W.R. 1999. Comparative analysis of splicing of the complete set of chloroplast group II introns in three higher plant mutants. Nucleic Acids Res. 27, 3866–3874.
Kapoor S., Suzuki J.Y., Sugiura M. 1997. Identification and functional significance of a new class of non-consensus-type plastid promoters. Plant J. 11, 327–337.
Miyagi T., Kapoor S., Sugita M., Sugiura M. 1998. Transcript analysis of the tobacco plastid operon rps2/atpI/H/F/A reveals the existence of a non-consensus type II (NCII) promoter upstream of atpI coding sequence. Mol. Gen. Genet. 257, 299–307.
Hubschmann T., Borner T. 1998. Characterisation of transcript initiation sites in ribosome-deficient barley plastids. Plant Mol. Biol. 36, 493–496.
Hess W.R., Hoch B., Zeltz P., Hubschmann T., Kossel H., Borner T. 1994. Inefficient rpl2 splicing in barley mutants with ribosome-deficient plastids. Plant Cell, 6, 1455–1465.
Dunford R., Walden R.M. 1991. Plastid genome structure and plastid-related transcript levels in albino barley plants derived from author culture. Curr. Genet. 20, 339–347.
Rusakova E.E., Tunitskaya V.L., Kochetkov S.N. 1999. RNA polymerase of bacteriophage T7. Mol. Biol. 33, 353–367.
Baena-Gonzalez E., Baginsky S., Mulo P., Summer H., Aro E.-M., Link G. 2001. Chloroplast transcription at different light intensities. Glutathione-mediated phosphorylation of the major RNA polymerase involved in redox-regulated organellar gene expression. Plant Physiol. 127, 1044–1052.
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Translated from Molekulyarnaya Biologiya, Vol. 39, No. 5, 2005, pp. 762–775.
Original Russian Text Copyright © 2005 by Lysenko, Kuznetsov.
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Lysenko, E.A., Kuznetsov, V.V. Plastid RNA Polymerases. Mol Biol 39, 661–674 (2005). https://doi.org/10.1007/s11008-005-0081-1
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DOI: https://doi.org/10.1007/s11008-005-0081-1