Abstract
The density functional theory (DFT) calculations have been performed on a new set of organic Brønsted acids based on 9H-fluorene scaffold. The optimal structures and acidity of the compounds have been calculated by using DFT/B3LYP/6–31 + + G(d,p) computational method. The acidity of the designed compounds was obtained in the range of 276–328 kcal/mol that the fluorene scaffold bearing ketenimine group 17 and trifilic group 20 with ΔHacid of 276.3 and 285.4 kcal/mol, respectively, were found to be within the range of superacids, being more acidic than simple fluorene and mineral acids. The designed compounds and the corresponding conjugate bases were also examined from the aromaticity indices point of view. The tautomerization process for some designed structures was investigated by DFT calculations. Molecular electrostatic potential analysis for the designed acids and the corresponding conjugate bases was also used for charge distribution analysis.
Similar content being viewed by others
Avoid common mistakes on your manuscript.
Introduction
Chemists have long regarded inorganic acids such as sulfuric, nitric, perchloric and hydrofluoric acids as the strongest available acidic systems. This perspective significantly changed with the discovery of systems with an acidity of 1012 times higher than sulfuric acid [1]. Hall and Conant observed that weak organobases such as ketones and aldehydes could form salts with perchloric acid in nonaqueous solvents. Since perchloric acid can protonate such weak bases in nonaqueous systems, they called this acidic system as superacid [2]. Based on the researches of Gillespie et al., who have carried out pioneering activities in the field of mineral aspects of the acidic systems, all protic acids stronger than 100% sulfuric acid should be classified as superacids [3]. Therefore, HClO4, HSO3F, and CF3SO3H are referred to as superacids. A superacid can be protonated by very weak bases such as methane, due to its very high acidity. The acidity threshold in the gas phase has been reported to be 300 kcal/mol [4]. Superacids and strong acids are used in cracking and alkylation processes and the chemical industry [5, 6]. The acidity of different acidic systems can be measured experimentally using UV–Vis and nuclear magnetic resonance spectroscopy [7, 8]. However, these experiments are typically performed in the solution phase, and the results are highly dependent on the properties of the solvent. In this regard, regardless of the type of solvent used, the gas-phase acidity has been presented as a standard method for identifying the superacid properties. The gas-phase acidity plays a significant role in the design of new superacids. Today, in computational chemistry, improving the acidity of organic compounds has attracted the attention of many researchers [9,10,11,12,13,14,15,16,17,18,19]. In most conducted studies, the negative charge on the corresponding conjugate base is stabilized by inductive effect (withdrawing groups), delocalization (aromaticity), and intramolecular hydrogen bonding [4].
The present research team has also conducted the DFT/B3LYP calculations on hybrid organic–inorganic acids to investigate their gas-phase acidity [20,21,22,23]. A strong acidity value was predicted for a set of fluorosulfuric acids in which oxygen is replaced by an unsaturated ring [23]. The acidity of these acids without the electron-withdrawing groups on the ring is greater than the fluorosulfuric acid. It was observed that the replacement of hydrogen by electron-withdrawing groups such as –CN and –F on the ring leads to an increment in the acidity up to the level of superacids.
Fluorene is a tricyclic aromatic hydrocarbon in which the five-membered ring has no aromaticity. It can be served as molecular scaffold for organic superacids. A salient structural feature of this compound is the central C9(sp3)–H subunit, which can freeze the annulene network of the π bonds along the molecular framework. The C9-H site of the fluorene ring has a weak acidity (pKa = 22.6 in DMSO) whose protonation leads to forming of a stable aromatic anion with a bold orange color [24, 25]. According to the points mentioned above, and in continuation of previous works, the present study has attempted to design neutral organic superacids using fluorene scaffold and enole functional group and establish of substituents such as –F and –CN on the benzene rings (Scheme 1).
In the second section of the study, other acidic functional groups were placed on the C9-H site of the fluorene ring to obtain hybrid organic–inorganic acids (Scheme 2).
Computational details
The geometric optimization and frequency calculations for all proposed structures have been carried out using Gaussian 09 software [26] and applying the DFT-B3LYP/6–31 + + G(d,p) computational method (Supporting Information). The frequency calculations were performed using the mentioned computational method to obtain the thermodynamic data of the deprotonation enthalpies (ΔHacid) and Gibbs free energies (ΔGacid) of the acids 1–23 (Eq. 1) at 298 K (Eqs. (2) and (3)) [23]:
HAH, HA−, GAH, and GA− donate enthalpies and Gibbs free energies of the designed acid and its corresponding anions, respectively. For the proton, the following values were used: H298(H+) = 1.48 kcal/mol and G298(H+) = −6.27 kcal/mol [27, 28]. Optimized coordinates, geometries, and energies of all structures are inserted in the Supporting Information.
Results and discussion
Accuracy evaluation of computational method and the basis set used in the acidity estimation are of high prominence. Among the features of an ideal computational method, one can refer to the high computational speed and cost-effectiveness and increased accuracy in the computational methods. It says that the DFT/B3LYP method usually leads to accurate results regarding the physicochemical properties of organic compounds such as protonation and deprotonation processes [29,30,31]. To find an accurate and computationally efficient method, the two computational B3LYP and MP2 methods have been compared in this study. For this purpose, the bond lengths and ∆Hacid associated with compound 1 have been calculated using the above two computational methods, and the results are presented in Table 1.
As would be observed, there is a relatively good agreement between the two methods. The plot of the calculated bond lengths obtained from the DFT method vs the calculated data from MP2 indicates a linear relationship with a regression value of r2 = 0.994, as shown in Fig. 1.
The acidity of 1 was also calculated using the two mentioned methods, and the results showed that the enthalpy values were almost the same (Table 1). Therefore, the B3LYP/6–31 + + G(d,p) method is expected to be suitable for calculating the ΔHacid of the designed acids 1–23.
The prototropic tautomers of the chemicals 1, 14, and 18 are shown in Scheme 3 with their relative energies in kcal/mol. The C–H tautomers are more stable than the proposed structures in Schemes 1 and 2. In the present study, the structures in Schemes 1 and 2 were considered and their ΔHacid were calculated by DFT calculations.
Some optimized structures of the examined compounds 1–23 at the B3LYP/6–31 + + G(d,p) computational level are shown in Fig. 2.
Usually, the strong acid is related to the more stable the resultant conjugate base (anion). Upon deprotonating the designed acids 1–23, the negative charge is expected to be delocalized over the rings and reach stability. According to the Hückel’s rule, placing of a negative charge on the cyclopentadiene ring in fluorene framework leads to its aromatization (Scheme 4). Therefore, the evaluation of aromaticity indices in corresponding conjugate bases is so essential. Aromaticity cannot be experimentally measured. Aromaticity is a phenomenon that can be described by different descriptors such as structural, energy, and magnetic properties.
The nucleus-independent chemical shift (NICS) [32] and harmonic oscillator model of aromaticity (HOMA) [33] are among the efficient methods for determining the aromaticity of cyclic compounds. The NICS parameter is calculated as the negative magnetic charge shielding at intervals in the center, top, and bottom of the ring. The NICS measurement at a distance of 1 Å above the ring using GIAO method [34] and bq dummy atom as a probe has been reported to be the best way to accurately determine the aromaticity characteristics. The negative and positive NICS values indicate the aromaticity and antiaromaticity natures of the examined compounds, respectively. HOMA index is a geometric descriptor of aromaticity based on the bond length. This index is calculated by using Eq. (4) [35].
Here, n indicates the number of carbon atoms in the ring under study, and the normalization factor α is 257.7. In Eq. (3), Ri and Ropt stand for the length of C–C bonds in the investigated aromatic ring and an ideal aromatic system such as benzene, respectively. Krygowski reported the dopt value as equal to 1.388 Å for benzene [33]. On the other hand, the B3LYP/6–311 + G(d,p)-calculated Ropt for ionic homoaromatic C5H5− is 1.415 [36]. It should be noted that HOMA is equal to 1 for the benzene ring, and the aromaticity of other compounds is compared with this value. The HOMA and NCIS values were calculated and reported for the studied compounds. Tables 2 and 3 present the values of ∆Hacid, ∆Gacid, HOMA, and NICS associated with compounds 1–23 and their anions.
As mentioned above, the 9H-fluorene molecule is a weak acid. According to Scheme 4, this compound is converted to a stable anion by losing a proton. The HOMA and NICS values have been calculated for the five- and six-membered fluorene rings (Table 2). According to the estimated values, it can be observed that the five-membered ring is not aromatic in neutral form. Due to deprotonation, the HOMA and NICS values in the anionic form have significantly increased, indicating the aromatization of the five-membered ring and negative charge stability as well. It is also worth noting that the aromaticity indices of benzene rings in the anionic form are expected to decrease relative to the neutral one. The resonance energy of the molecule in the anionic form is distributed between all the rings. In contrast, in the neutral form, two separate benzene rings have their own energy. Comparing the aromaticity indices in the neutral and anionic forms of all studied compounds testifies to this point (Tables 2 and 3). Adding an enole group to the C9-H of the fluorene ring results in acid 1 with an acidity of ΔHacid = 323.0 kcal/mol, which has more acidity than simple 9H-fluorene to amount of 29.1 kcal/mol. Placing fluorine atoms on the aromatic rings in different situations leads to compounds 2–8. Compound 2 bearing two electronegative fluorine atoms on C1 and C8 has ΔHacid = 328.2 kcal/mol while the acidity of 3 with two –F on C2 and C7 is ΔHacid = 316.3 kcal/mol. Among the acids 2–8, compound 3 is the strongest superacid which may be due to the proper symmetry of the compound and appropriate delocalization of the negative charge in its corresponding conjugate base. Replacing hydrogen on C3 and C6 with fluorine atoms at 9H-fluorene structure resulted in compound 4 with ΔHacid = 318.2 kcal/mol that is 33.9 kcal/mol lower than 9H-fluorene. According to the data in Table 2, it is clear that compound 5 bearing fluorine atoms meets one of the highest acidities (ΔHacid = 316.5 kcal/mol). The fluorine electron-withdrawing substituents are positioned in this compound in such a way that they meet maximum repulsion concerning to each other (Fig. 3). Therefore, compound 5 is unstable, and deprotonation has caused the aromaticity parameters of the five-membered ring to be significantly increased in the conjugate base of 5 and stabilized as well. Stability of the conjugate base (5-H)− due to the increased aromaticity leads to an improvement in the acidity of compound 5.
Moreover, simultaneous placement of two fluorine atoms on a benzene ring in acid 6 has been investigated. It is observed that the acidity of this compound has increased compared to 2; however, it is lower than that of compounds 3–5. It should be noted that molecules 2 and 6 are relatively stable due to the formation of intramolecular hydrogen bonding between the –F and the –OH group and do not tend to lose proton (Fig. 4).
Compound 6 has an asymmetric structure, and the negative charge distribution is not uniform in it. Examination of HOMA indices in the three rings of five-membered one, benzene and benzene ring containing two –F atoms, shows that the stability of the five-membered ring has dramatically increased, while no significant change can be observed in the stability of the benzene rings. The negative charge in this molecule has a greater tendency to form resonance in the five-membered ring, and therefore, the HOMA index significantly increases. Compounds 6 and 7 are geometrical isomers to each other, Z-6 and E-7. It was found that the formation of intramolecular hydrogen bonding between the –F atom and the –OH group in the Z-6 isomer leads to a reduction in the acidity by about 6–7 kcal/mol. We carried out a computational investigation on structure 8 bearing four F atoms. Using four F atoms on benzene rings results in acidity enhancement to 312.0 kcal/mol for 8. The fluorine atom is a strong electron-withdrawing group while having a low electron acceptor tendency due to its small atomic radius. The cyano group is an appropriate electron acceptor group. It needs less steric requirements for delocalization of negative charge of the corresponding conjugate base. The –CN groups can easily delocalize negative charge with resonance and inductive effect and increase the stability and consequently improve the acidity of the examined compounds and achieve strong acids. According to Table 2, it can be observed that the acidity of compound 9 has significantly increased by adding four cyano groups being higher than that of 1 to the amount of 36 kcal/mol. B3LYP/6–31 + + G(d,p) calculations reveal that compound 9 exhibits strong acidity to superacid behavior, ΔHacid = 287.2 kcal/mol. The HOMA index in the conjugate base of 9 has increased by about 0.39, which increases the aromaticity of the five-membered ring and improves its acidity as a consequence.
The π system expansion usually results in better delocalization of negative charge throughout the molecule. Hence, a double bond was added to the enole structure of compound 1. Contrary to expectations, a decrease in ∆Hacid was observed. However, adding four –CN electron-withdrawing groups to 10 has led to the formation of structure 13, whose acidity has been estimated to be higher than that of the basic fluorene molecule to the amount of 65 kcal/mol and falls within the range of superacids [4].
The findings prompted us to investigate new superacids based on the strong inorganic acids of perchloric, sulfonic, nitric, and phosphoric acid (Table 3). Furthermore, the effect of adding C = C = NH substituent was investigated on the acidity of 14–17. According to Table 3, it can be seen that adding the ketenimine group (–C = C = NH) has led to an increment in the acidity of compound 14 to the amount of 302.9 kcal/mol, which can be classified as a strong N–H acid. This significant increase in acidity is mainly due to the expansion of the π-conjugate system, which stabilizes the corresponding anion and thus improves its acidity. Also, the NICS index of the five-membered ring has drastically increased (−10.85 ppm) as well as the HOMA index (0.83), which indicates the importance of this ring in stabilizing the negative charge in the anion (14-H)−.
In addition, the effects of four cyano groups on the acidity of compound 14 were also investigated. The remarkable stability of compound 17 with ∆Hacid = 276.3 kcal/mol indicated that this compound is the strongest superacid among the examined structures. Among the studied hybrid organic–inorganic acids 18–23, it can be clearly observed that the acidity of the compounds based on sulfuric acids 18–20 has remarkably increased and the strongest superacids have been obtained with acidity in the range of 285.4–291.9 kcal/mol. All the proposed acids 18–20 are more acidic than H2SO4 (ΔHacid = 311.5 kcal/mol) and FSO3H (ΔHacid = 301.3 kcal/mol) [37]. Superacid 20 based on trifluoromethane sulfonic acid (trifilic acid) meets the high acidity 285.4 kcal/mol. This can be attributed to the electron-withdrawing group of –CF3, which has well improved the stability of the negative charge in the conjugate base. It is also observed that adding of fluorine atom instead of the hydroxyl group in the sulfuric acid-based superacid 18 (compound 19) has led to a slight increase in the acidity compared to compound 18 by about 5.5 kcal/mol. Figure 5 shows a comparison between the bond lengths in 19 and its corresponding conjugate base (19-H)−. As would be observed, due to the negative charge stability in the conjugate base of 19, the bond lengths have increased in the five-membered ring, which indicates the presence of resonance phenomena in anion structure (19-H)−.
Finally, it was claimed that for the conjugate bases of 1–23, the negative charge is placed on the cyclopentadiene ring. Molecular electrostatic potential (MEP) maps can also be used to support this claim [38]. The MEP map provides the charge distributions of molecules in three-dimensional space, the positive (blue) and negative (red). Calculated acidities at B3LYP/6–31 + + G(d,p) level are the highest for molecules 17 and 20. Therefore as representative examples, MEP maps of 17 and 20 and the corresponding conjugate bases are shown in Fig. 6. As would be observed, the negative charge in (17-H)− and (20-H)− is placed on the five-membered ring. Some common features can be observed in the MEP maps. The positive charge (blue region) is mainly localized on the hydrogen atom of the acid unit, and this will favor deprotonation. The regions governing the electron-rich nitrile groups in (17-H)− are strongly negative (red color), which confirms the high capacity of –CN group for delocalization of negative charge. It can be seen from MEP of (20-H)− that the negative charge is distributed throughout the structure.
Finally, to examine the acidity of the designed molecules in solution phase, the theoretical studies on 9H-fluorene, 1, 14, and 19 in dimethylsulfoxide (DMSO) were performed using the conductor-like polarizable continuum model (CPCM), through DFT calculations done at B3LYP/6–31 + + G(d,p) method. It should be mentioned that the CPCM model is often considered one of the most successful solvation models [39]. The proton transfer reaction between the proposed acids and DMSO molecules can be considered to estimate acidities in DMSO. The protonation enthalpies of DMSO by the acids in solution (ΔrHDMSO) were calculated according to the Eq. (5):
The pKas of the studied acids in DMSO were calculated using the ΔrHDMSO values and the empirical Eq. (6) [40,41,42]:
The calculated ΔrHDMSO and pKa (theor) values of 9H-fluorene, 1, 14, and 19 in DMSO are collected in Table 4.
It should be mentioned that calculated ΔrHDMSO values are in good agreement with the experimental pKa values for a wide variety of organic acids with the average absolute error of 1.1 in pKa unit [40–42]. As shown in Table 4, the calculated pKa (theor) value for 9H-fluorene at B3LYP/6–31 + G(d,p) level of theory is 24.3 which is close to the experimental value (pKa = 22.6 in DMSO) [24]. The data in Table 4 show that the molecule 14 is a moderate acid, while the calculated pKa of the acid 19 indicates its superacidity in DMSO solvent.
Conclusion
A new category of organic fluorene acids (23 structures) was designed, and their acidities were investigated by DFT/B3LYP/6-31++G(d,p) method. Some designed structures are more acidic than fluorene and even inorganic acids such as H2SO4 and FSO3H. Upon deprotonation, the negative charge is delocalized in the cyclic framework, which led to an aromatic system. This is in harmony with aromatic indices (NICS and HOMA) and MEP analysis of the corresponding conjugate base of acids. Substitution of electron-withdrawing groups, –CN and –F, on cyclic framework enhanced the acidity. The ΔHacid values were calculated in the range of 276.2–328.2 kcal/mol, which some fall into the defined range of superacidity. The proposed acids are not prepared as yet. They can be used in the organic syntheses as strong acid and catalysts, and their synthesis is strongly recommended.
Availability of data and material
The online version of this article contains supplementary material, which is available to authorized users.
References
Olah GA, Prakash GS, Sommer J, Molnar A (2009) Superacid Chemistry. John Wiley & Sons Inc
Hall NF, Conant JB (1927) J Am Chem Soc 49:3062–3070
Gillespie RJ, Peel TE, Robinson EA (1971) J Am Chem Soc 93:5083–5087
Vianello R, Maksić ZB (2008) New J Chem 32:413–427
Greb L (2018) Chem A Eur J 24:17881–17896
Olah GA, Prakash Surya GK (2004) Carbocation Chemistry. John Wiley & Sons Inc
Pagni RM (2009) Found Chem 11:43–50
Yang W, Wang Z, Huang J, Jiang Y (2021) J Phys Chem C 125:10179–10197
Raczyńska ED, Gal JF, Maria PC (2016) Chem Rev 116:13454–13511
Koppel IA, Taft RW, Anvia F, Zhu SZ, Hu LQ, Sung KS, DesMarteau DD, Yagupolskii LM, Yagupolskii YL (1994) J Am Chem Soc 116:3047–3057
Yáñez M, Mó O, Alkorta I, Elguero J (2013) Chem A Eur J 19:11637–11643
Rasheed T, Siddiqui SA, Kargeti A, Shukla DV, Singh V (2021). Pandey AK. https://doi.org/10.1007/s11224-021-01786-y
Lipping L, Leito I, Koppel I, Krossing I, Himmel D, Koppel IA (2015) J Phys Chem A 119:735–743
Vianello R, Maksić ZB (2009) New J Chem 33:739–748
Alcami M, Mo O, Yanez M (2002) J phys Org Chem 15:174–186
Si MK, Ganguly B (2017) New J Chem 41:1425–1429
Vianello R, Liebman JF, Maksić ZB (2004) Chem A Eur J 10:5751–5760
Srivastava AK, Kumar A, Misra N (2017) J Fluor Chem 197:59–62
Rocha AS, Costa GC, Tamiasso-Martinhon P, Sousa C, Rocha AB (2017) Mater Chem Phys 186:138–145
Saeidian H (2020) Struct Chem 31:851–859
Saeidian H, Mashhadian S, Mirjafary Z, Rouhani M (2019) Comput Theor Chem 1157:11–18
Saeidian H, Shams B, Mirjafary Z (2019) Struct Chem 30:787–793
Shams B, Saeidian H (2018) Comput Theor Chem 1135:48–55
Bordwell FG (1988) Acc Chem Res 21:456–463
Scherf GW, Brown RK (1960) Can J Chem 38:697–712
Frisch MJ, Trucks GW, Schlegel HB, Scuseria GE, Robb MA, Cheeseman JR, Zakrzewski VG, Montgomery JA Jr, Stratmann RE, Burant JC, Dapprich S, Millam JM, Daniels AD, Kudin KN, Strain MC, Farkas O, Tomasi J, Barone V, Cossi M, Cammi R, Mennucci B, Pomelli C, Adamo C, Clifford S, Ochterski J, Petersson GA, Ayala PY, Cui Q, Morokuma K, Salvador P, Dannenberg JJ, Malick DK, Rabuck AD, Raghavachari K, Foresman JB, Cioslowski J, Ortiz JV, Baboul AG, Stefanov BB, Liu G, Liashenko A, Piskorz P, Komaromi I, Gomperts R, Martin RI, Fox DJ, Keith T, Al-Laham MA, Peng CY, Nanayakkara A, Challacombe M, Gill PMW, Johnson BG, Chen W, Wong MW, Andres JL, Gonzalez C, Head-Gordon M, Replogle ES, Pople JA (2013) Gaussian 09. Gaussian, Inc., Wallingford CT
Bartmess JE (1994) J Phys Chem 98:6420–6424
Krygowski TM (1993) J Chem Inf Comput Sci 33:70–78
Bryantsev VS, Diallo MS, Van Duin AC, Goddard WA (2009) J Chem Theory Comput 5:1016–1026
Singh A, Ojha AK, Jang HM (2018) ChemistrySelect 3:837–842
Geerlings P, De Proft F, Langenaeker W (2003) Chem Rev 103:1793–1874
Chen Z, Wannere CS, Corminboeuf C, Puchta R, Schleyer PV (2005) Chem Rev 101:3841–3888
Krygowski TM, Cyrański MK (2001) Chem Rev 101:1385–1420
Wolinski K, Hinton JF, Pulay P (1990) J Am Chem Soc 112:8251–8260
Krygowski TM, Szatylowicz H, Stasyuk OA, Dominikowska J, Palusiak M (2014) Chem Rev 114:6383–6422
Raczyńska ED, Hallman M, Kolczyńska K, Stępniewski TM (2010) Symmetry 2:1485–1509
Koppel IA, Burk P, Koppel I, Leito I, Sonoda T, Mishima M (2000) J Am Chem Soc 122:5114–5124
Tasi G, Palinko I (1995) Using molecular electrostatic potential maps for similarity studies, in Molecular Similarity II. Topics in Current Chemistry, (Ed: K. D. Sen) Vol. 174, Springer, Berlin, Heidelberg
Skyner RE, McDonagh JL, Groom CR, van Mourik T, Mitchell JBO (2015) Phys Chem Chem Phys 17:6174–6191
Vianello R, Maksic ZB (2004) Eur J Org Chem 2004:5003–5010
Valadbeigi Y (2017) Chem Phys Lett 681:50–55
Vianello R, Maksic ZB (2005) Tetrahedron Lett 46:3711–3713
Author information
Authors and Affiliations
Contributions
Baharak Farzin: formal analysis, investigation, resources, software, validation, and visualization. Hamid Saeidian: conceptualization, formal analysis, investigation, resources, software, validation, visualization, and writing—review & editing. Zohreh Mirjafary: conceptualization, formal analysis, investigation, resources, software, validation, visualization, and writing—review & editing. Javad Mokhtari Aliabad: advising and writing—review & editing.
Corresponding author
Ethics declarations
Conflict of interest
The authors declare no competing interests.
Additional information
Publisher's Note
Springer Nature remains neutral with regard to jurisdictional claims in published maps and institutional affiliations.
Supplementary information
Below is the link to the electronic supplementary material.
Rights and permissions
About this article
Cite this article
Farzin, B., Saeidian, H., Mirjafary, Z. et al. Gas-phase acidities of organic acids based on 9H-fluorene scaffold: a DFT study. Struct Chem 33, 23–33 (2022). https://doi.org/10.1007/s11224-021-01819-6
Received:
Accepted:
Published:
Issue Date:
DOI: https://doi.org/10.1007/s11224-021-01819-6