Abstract
Voltage-gated calcium channels are evolutionarily related transmembrane signaling proteins that mediate calcium entry during action potentials and other forms of cellular depolarization in order to trigger neurotransmission, secretion, contraction, gene transcription, and other physiological processes. Calcium channels are the molecular targets for several major classes of drugs used in the treatment of cardiovascular disorders, pain, and epilepsy. Recent advances in the structural biology of these proteins using X-ray crystallography and cryogenic electron microscopy have given new insights into the molecular basis of their function and pharmacology. Here I review the major classes of drugs and neurotoxins that act on voltage-gated calcium channels and elucidate their complex pharmacology at the atomic level. New understanding of the diseases and therapeutics of these channel proteins will arise from the emerging mechanistic principles derived from these recent structural analyses.
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Keywords
Calcium Channel Pharmacology
Neurotoxins and calcium channel antagonist drugs inhibit members of each of the three major calcium channel families, often with high specificity and potency (Triggle, 2003; Zamponi et al., 2015). The L-type calcium currents conducted by calcium channels of the CaV1 family are blocked by three chemically distinct classes of drugs: phenylalkylamines, benzothiazepines, and dihydropyridines (Fleckenstein, 1983; Hockerman et al., 1997b; Zamponi et al., 2015; Godfraind, 2017). These drugs are all used in the therapy of cardiovascular disorders. The phenylalkylamine verapamil and the benzothiazepine diltiazem are used primarily in the treatment of atrial arrhythmias, whereas dihydropyridines such as nifedipine and amlodipine are used primarily in the treatment of hypertension and angina pectoris (Fleckenstein, 1983; Hockerman et al., 1997b; Triggle, 2003; Sampson & Kass, 2011; Zamponi et al., 2015; Godfraind, 2017).
N-type calcium currents conducted by CaV2.2 channels, P/Q-type calcium currents conducted by CaV2.1 channels, and R-type calcium currents conducted by CaV2.3 channels trigger exocytosis of neurotransmitters from presynaptic nerve terminals (Olivera et al., 1994; Zamponi et al., 2015). These calcium channels are blocked by peptide neurotoxins, which paralyze the prey of cone snails, spiders, and other venomous animals (Olivera et al., 1994; Zamponi et al., 2015). They are specifically blocked by drugs that are either in current use or in active development for the treatment of epilepsy and chronic pain (Zamponi et al., 2015).
T-type calcium currents conducted by CaV3 channels are important in repetitively firing cells such as the specialized cardiomyocytes of the sino-atrial (SA) node in the heart and the reticular neurons and relay neurons in the thalamus (Perez-Reyes, 2003). Drugs that inhibit these calcium channels are in development for the treatment of cardiac arrhythmia, epilepsy, and chronic pain (Tringham et al., 2012; Bourinet et al., 2014; Zamponi et al., 2015).
Major advances in understanding the complex effects of these drugs on voltage-gated calcium channels have come from detailed electrophysiological studies, and the structural basis for their specific actions has been elucidated through X-ray crystallography and cryogenic electron microscopy (cryo-EM). In the sections below, I review the functional mechanisms for the actions of these drugs and neurotoxins, and then present recent work on the structures of their drug-receptor complexes on calcium channels.
State-Dependent Drug Block of CaV1 Channels
Among the classical voltage-gated calcium channel blockers, the phenylalkylamines and benzothiazepines are used primarily for cardiac arrhythmia (Triggle, 1999; Sampson & Kass, 2011; Godfraind, 2017). They have strongly frequency-dependent block, which enhances their action on calcium channels in rapidly firing injured cardiac myocytes that are responsible for arrhythmia relative to uninjured myocytes contracting at a normal rate (Hondeghem & Katzung, 1984). They are also effective in reducing the rate of rise of action potentials in the atrioventricular (AV) node. Therefore, they are effective in preventing re-entry of action potentials into the atria from the AV node and in slowing the conduction of action potentials from the atria to the ventricles via the AV node (Triggle, 1999; Sampson & Kass, 2011; Godfraind, 2017). In contrast, dihydropyridines are primarily used for hypertension and angina pectoris (Triggle, 1999; Godfraind, 2017). They have strongly voltage-dependent block, which is driven by high-affinity binding to voltage-dependent calcium channels in the inactivated state (Bean, 1984). They also bind with higher affinity to the isoform of CaV1.2 expressed in vascular smooth muscle (Welling et al., 1997). Therefore, through these two mechanisms, they preferentially inhibit calcium channels in continuously depolarized vascular smooth muscle cells that sustain contraction of blood vessels in hypertension and angina pectoris (Godfraind, 2017). State-dependent binding and action is essential for the clinical use of these calcium antagonist drugs.
The state-dependent block of sodium channels by local anesthetic and antiarrhythmic drugs is well described by the classical Modulated Receptor Hypothesis (Hille, 1977; Hondeghem & Katzung, 1977; Bean et al., 1983; Hille, 2001). In this model, drug block is frequency dependent because the receptor site is located in the pore and is more rapidly accessible for drug binding when the pore is open; therefore, generation of action potentials at high frequency increases drug block (Hille, 1977). Drug block is voltage dependent because these drugs bind to the inactivated state of sodium channels with high affinity; therefore, sodium channels in damaged, depolarized cells are preferentially blocked (Hille, 1977; Hondeghem & Katzung, 1984). Together, these mechanisms allow local anesthetic and antiarrhythmic drugs to prevent pain and cardiac arrhythmias without blocking normal sensory and cardiac function (Kanaya et al., 1983; Bean, 1984; Hondeghem & Katzung, 1984). Frequency-dependent block by phenylalkylamines and benzothiazepines results from binding in the pore, which is opened during each action potential and provides rapid drug access to their receptor site(s) (Kanaya et al., 1983). Voltage-dependent block by dihydropyridines results from preferential binding to the inactivated conformation of calcium channels (Bean, 1984). These two characteristic forms of block of CaV1 channels are illustrated in Fig. 1a, b for the model calcium channel CaVAb, a calcium-selective derivative of the ancestral bacterial sodium channel NaVAb (Tang et al., 2014). CaVAb has surprisingly high affinity for calcium-antagonist drugs, which leads to frequency- and voltage-dependent block at concentrations <10-fold higher than in mammalian cardiac calcium channels (Fig. 1; Ren et al., 2001; Tang et al., 2016). The phenylalkylamine verapamil enters the pore when it is open and progressively blocks the ionic current during single depolarizations (Fig. 1a, left). Repetitive stimulations at higher concentrations generate cumulative open channel block (Fig. 1a, right). In contrast, the dihydropyridine nimodipine does not cause rapid pore block during single depolarizing pulses that open the pore (Fig. 1b, left). However, repetitive depolarizations at increasing concentrations cause cumulative voltage-dependent block (Fig. 1b, right). Together, the frequency dependence and voltage dependence of drug action determine the clinical uses of these calcium-antagonist drugs for cardiac arrhythmia vs. hypertension and angina pectoris (Hondeghem & Katzung, 1984; Sampson & Kass, 2011; Godfraind, 2017).
Drug Receptor Sites for State-Dependent Block of Calcium Channels
The initial molecular-mapping studies of the receptor site for calcium-antagonist drugs were based on photoaffinity labeling with photoreactive derivatives of phenylalkylamines and dihydropyridines (Striessnig et al., 1990, 1991; Nakayama et al., 1991). A photoreactive derivative of verapamil labeled the intracellular end of the S6 segment in domain IV (Striessnig et al., 1990). In contrast, photoreactive derivatives of dihydropyridines specifically labeled the outer half of both the IIIS6 and IVS6 segments (Nakayama et al., 1991; Striessnig et al., 1991). These results led to a domain-interface model for dihydropyridine binding in which dihydropyridines bind in a voltage-dependent manner to a site on the lipid-facing surface of the pore domain that is formed by the IIIS6 and IVS6 segments (Fig. 1c; Catterall & Striessnig, 1992). In contrast, pore-blocking phenylalkylamines were proposed to bind within the pore to a site on the IVS6 segment that is accessible from the intracellular end of the pore in the open state (Fig. 1c). This model of drug binding was confirmed and extended by extensive mapping of the receptor sites for phenylalkylamines (Hockerman et al., 1995; Hockerman et al., 1997a), benzothiazepines (Brauns et al., 1995; Kraus et al., 1996), and dihydropyridines (Mitterdorfer et al., 1996; Peterson et al., 1996) by site-directed mutagenesis, and the receptor site for dihydropyridines was constructed de novo by inserting mutations of nine or ten amino acid residues into the drug-binding IIIS6 and IVS6 transmembrane segments of drug-insensitive CaV2 channels (Hockerman et al., 1997c; Ito et al., 1997; Sinnegger et al., 1997). Altogether, these photoaffinity labeling and site-directed mutagenesis studies gave a detailed two-dimensional view of these separate, but closely spaced, drug receptor sites on calcium channels (Hockerman et al., 1997b; Hofmann et al., 1999; Striessnig, 1999).
Structures of the Drug Receptor Sites on CaVAb Channels
X-ray crystallography revealed two distinct receptor sites for phenylalkylamines and dihydropyridines on CaVAb in three dimensions (Fig. 2a; Tang et al., 2016). As expected, verapamil binds in the pore just at the intracellular exit from the ion selectivity filter into the central cavity (Fig. 2a, bottom; Tang et al., 2016). Its charged amino group projects upward into the pore, forming a complex with the backbone carbonyls of Thr175 at the intracellular end of the ion selectivity filter. Its two flanking aromatic moieties make hydrophobic interactions on either side of the ion-conducting pathway through the ion selectivity filter, staunching ion flow through the selectivity filter like a bandage (Fig. 2a, bottom, inset; Tang et al., 2016). X-ray crystallography studies indicated that the benzothiazepine diltiazem also binds in the pore of CaVAb in a position that partially overlaps the phenylalkylamine binding site (Tang et al., 2019). Moreover, the binding poses for verapamil and diltiazem partially overlap that of the sodium channel-blocking local anesthetic and antiarrhythmic drugs (Tang et al., 2016; Lenaeus et al., 2017; Gamal El-Din et al., 2018), suggesting that frequency-dependent block by both sodium and calcium channel drugs results in a similar drug-receptor complex.
In contrast to the phenylalkylamine and benzothiazepine receptor sites, dihydropyridines such as amlodipine and nimodipine bind to a site on the external lipid-facing surface of the pore module, between two voltage sensors (Fig. 2a, top; Tang et al., 2016). Surprisingly, only a single dihydropyridine molecule bound to the CaVAb homotetramer and induced a quaternary conformational change that prevented binding to the other three analogous positions in the tetrameric structure (Tang et al., 2016). This quaternary conformational change disrupts the fourfold symmetry of CaVAb and causes one Ca2+ ion to bind directly to a carboxyl side chain in one of the coordination sites in the outer selectivity filter, effectively blocking the pore by tightly binding this Ca2+ ion. These results show that binding of dihydropyridines to a site on the lipid-facing surface of the pore module can effectively block Ca2+ conductance by allosterically inducing high-affinity binding of Ca2+ in the pore. This indirect allosteric mode of block was previously inferred from ligand-binding studies showing that binding of Ca2+ in the ion-selectivity filter is required for high-affinity binding of dihydropyridines to their separate receptor sites (Mitterdorfer et al., 1995; Peterson & Catterall, 1995), which implied that drug binding would also strengthen and stabilize the binding of Ca2+ in the pore through reciprocal energetic interactions.
Structures of the Drug Receptor Sites on CaV1.1 Channels
As described in chapter “Subunit Architecture and Atomic Structure of Voltage Gated Ca2+ Channels”, the skeletal muscle calcium channel CaV1.1 has been an essential molecular model for biochemical, molecular biological, and structural studies of CaV channels in general. Its high abundance allowed purification of large amounts in homogeneous form as required for structural studies (Wu et al., 2016). Moreover, its similar pharmacology to CaV1.2 channels has provided a model mammalian CaV channel for structural studies of the channel protein and its receptor sites for calcium-antagonist drugs (Fig. 2b; Wu et al., 2016; Zhao et al., 2019a). As for CaVAb (Tang et al., 2016, 2019), the receptor sites for verapamil and diltiazem are located in the pore in overlapping positions at the exit from the ion selectivity filter into the central cavity (Fig. 2b; Zhao et al., 2019a). Both drugs would physically block the influx of cations in these overlapping binding positions. Dihydroyridine agonists and antagonists bind in almost identical poses in a site formed at the intersection of the S5 and S6 segments in Domains III and IV (Fig. 2b; Zhao et al., 2019a), consistent with the Domain Interface Model for dihydropyridine binding developed from early photoaffinity labeling and site-directed mutagenesis studies (Hockerman et al., 1997b, c; Ito et al., 1997; Sinnegger et al., 1997). However, the binding position for dihydropyridines differs by approximately one helical turn between CaVAb and CaV1.1, suggesting significant evolution in the structure of this drug-receptor site in the calcium channel between bacteria and humans (Zhao et al., 2019a). The detailed structural information now available for calcium-antagonist drugs binding to mammalian CaV1 channels may provide a molecular template for the design of new generations of these highly effective drugs.
Neurotoxin Receptor Sites on CaV2 Channels
Voltage-gated calcium channels in the CaV2 family mediate N-type and P/Q-type calcium currents that trigger the release of neurotransmitters at presynaptic nerve terminals (Olivera et al., 1994; Chapter “Pharmacology and Structure-Function of Venom Peptide Inhibitors of N-Type (Cav2.2) Calcium Channels” by Md. Mahadhi Hasan et al.). Their function is regulated by a wide range of neurotransmitters and hormones working through intracellular second-messenger signaling pathways (Hille, 1994; Chapter “Pharmacology and Structure-Function of Venom Peptide Inhibitors of N-Type (Cav2.2) Calcium Channels” by Md. Mahadhi Hasan et al.). Because of their crucial roles in neuromuscular transmission, they are the molecular targets for many classes of polypeptide neurotoxins from cone snails, spiders, and other venomous species (McCleskey et al., 1987; Olivera et al., 1994).
Conotoxins
The first toxin discovered to work specifically on CaV2 channels was ω-conotoxin GVI-A from the Philippine cone snail Conus geographus (Reynolds et al., 1986). Subsequent work has characterized additional conotoxins that are specific for CaV2.2 channels (Olivera et al., 1987; Hirning et al., 1988; Chapter “Pharmacology and Structure-Function of Venom Peptide Inhibitors of N-Type (Cav2.2) Calcium Channels” by Md. Mahadhi Hasan et al.), as well as a large family of conotoxins with many other molecular targets (Puillandre et al., 2012). Conotoxins are encoded in large preproteins, which undergo disulfide crosslinking, proteolytic processing, and other posttranslational modifications to reach their mature structures (Bulaj & Olivera, 2008). The mature toxins are highly specific for their wide range of molecular targets and bind to their diverse receptor sites with high affinity (Puillandre et al., 2012; Chapter “Pharmacology and Structure-Function of Venom Peptide Inhibitors of N-Type (Cav2.2) Calcium Channels” by Md. Mahadhi Hasan et al.).
Agatoxins
CaV2.1 calcium channels mediate P/Q-type calcium currents (Llinás et al., 1989). ω-Agatoxin-IIIA from the funnel web spider Agelenopsis aperta was the first widely studied toxin that specifically blocks P/Q-type calcium currents (Uchitel et al., 1992). It was shown to block neurotransmission at mammalian neuromuscular junctions and at many synapses in the spinal cord and brain (Mintz et al., 1992a, b; Uchitel et al., 1992). These channels are also the molecular targets of some cone snail toxins, such as ω-conotoxin MVII-C (Hillyard et al., 1992; Chapter _26).
Structure of the CaV2.2 Complex with Ziconotide
CaV2.2 channels are localized at the nerve terminals of the primary afferent nociceptive neurons, which bring pain information into the spinal cord and activate ascending neurotransmission at synapses in the dorsal horn (Westenbroek et al., 1992, 1998). For this reason, ω-conotoxin GVI-A and related conotoxins prevent pain sensation in many nociceptive circuits and substantially reduce pain in animal models, including rodents and primates (Miljanich & Ramachandran, 1995; Bowersox et al., 1996). Drug discovery efforts led to the formulation of ziconotide, a synthetic derivative of ω-conotoxin GVI-A that is a potent analgesic when administered by intrathecal infusion into the spinal cord (Miljanich, 2004; Snutch, 2005). It is used for the treatment of extreme pain in advanced-stage cancer and other medical conditions. Structure-function studies using site-directed mutagenesis revealed that ω-conotoxin GVI-A binds to the outer mouth of the ion selectivity filter of the CaV2.2 channel and physically blocks it (Ellinor et al., 1994). Based on this information, Gao et al. expressed and purified the human CaV2.2 channel with an α2δ-1 subunit, a β3 subunit, and ziconotide bound and determined its structure at high resolution by cryo-EM (Gao et al., 2021). The resulting ziconotide/channel complex gave a detailed atomic view of the bound drug and the molecular interactions it makes with its receptor site (Fig. 3). The overall structures of apo-Cav2.2 and apo-Cav1.1 can be superimposed with a root mean square deviation (RMSD) of 1.10 Å over 1,728 Cα atoms, and the binding interaction with the α2δ-1 subunit remains essentially identical. On the cytosolic side, the intracellular AID helix following the S6 transmembrane segment in Domain I folds parallel to the membrane plane and interacts with the β3 subunit. Ziconotide, which blocks Cav2.2 with a half-maximal inhibitory concentration of ~1 nM, binds tightly in the electronegative cavity that surrounds the entrance to the selectivity filter (Fig. 3a). Specific recognition is mediated by charged and polar residues on the P1 and P2 helices, and the extracellular linkers in Domains II, III, and IV (Fig. 3b, c; Gao et al., 2021). Ziconotide directly seals the outer entrance to the vestibule of the selectivity filter by neutralizing its electronegativity and physically blocking the ion permeation pathway. A bound Ca2+ ion is shown as a green sphere, and the EEEE motif in the high field-strength site that determines Ca2+ selectivity is shown as thin sticks in Fig. 3c. Sequence comparison showed that four of the eight ziconotide-interacting residues in Cav2.2 (Thr643, Asp1345, Lys1372, and Asp1629) are not conserved in other Cav channels (Fig. 3c, d), providing a structural map of the determinants of drug-binding specificity. The mutations Y13A and R10A substantially reduce pore blocking by ziconotide, and Y13R abolishes its activity completely, consistent with the direct interactions of these amino acid residues with drugs bound in the drug receptor site in CaV2.2. Evidently, the high-affinity interacting surface of ziconotide is large and engages several different amino acid side chains. Nevertheless, development of small molecule inhibitors that engage a portion of this binding surface with high-affinity interactions may yield CaV2.2-specific drugs compatible with oral dosing and broader clinical application than ziconotide.
Drugs Acting on the Auxiliary α2 Subunits of CaV2 Channels
Calcium channels have multiple auxiliary subunits that are required to fine-tune their functional properties and to support maturation and cell-surface expression of the channel complex (Chapter “Subunit Architecture and Atomic Structure of Voltage Gated Ca2+ Channels” by William A. Catterall; Figs. 1a, b and 2a, b; Isom et al., 1994; Gurnett & Campbell, 1996; Davies et al., 2007). However, only a single class of drugs, the gabapentinoid calcium-channel antagonists, gabapentin, and pregabalin, act on the auxiliary subunits (Davies et al., 2007; Hendrich et al., 2008). These drugs are used in the treatment of epilepsy and chronic pain. They bind adjacent to the Von Willebrand Factor Type-A homology domain on the extracellular surface of the α2 subunit and modulate the cell surface expression of CaV2.2 channels, which conduct N-type Ca2+ currents that are required for the release of neurotransmitters in the brain and in nociceptive pathways in the spinal cord (Hendrich et al., 2008). Drug binding disrupts normal recycling of these CaV2.2 channels to the cell surface and thereby reduces nociceptive signaling from the periphery to the central nervous system (Bauer et al., 2009). Although the structure of the Von Willebrand Factor Type-A homology domain has been modeled based on its sequence homology, there are no direct structural studies of the binding and action of gabapentinoid drugs to date.
Drug Receptor Sites on CaV3 Channels
CaV3 channels are important targets for the treatment of epilepsy, chronic pain, and potentially cardiac arrhythmia (Weiss & Zamponi, 2020). Absence epilepsy in GAERS rats arises from inappropriate repetitive firing in the thalamus and cerebral cortex driven by the trisynaptic circuit of inhibitory thalamic reticular neurons, excitatory thalamic relay neurons, and excitatory cortical pyramidal cells, whose normal circadian activity drives sleep spindles and REM sleep (Hosford, 1995; Proft et al., 2017). Specific mutations in CaV3.2 channels cause idiopathic generalized epilepsy (Khosravani et al., 2005). Type-type calcium currents conducted by CaV3 channels are also implicated in chronic pain (Bourinet et al., 2016) and cardiac arrhythmia (Torrente et al., 2020).
Extensive drug discovery and development efforts have been devoted to CaV3.1 and CaV3.2 in academic laboratories and at Zalicus Inc. and its corporate precursor Neuromed Inc. (Powell et al., 2014). Z944 is the most advanced drug to emerge from these studies, and it is effective in animal models of chronic pain (Lee, 2014; LeBlanc et al., 2016) and absence epilepsy (Tringham et al., 2012). Recent structural studies have revealed the molecular basis for the inhibition of CaV3.1 channels by this drug (Zhao et al., 2019b). As shown in Fig. 4a, b, Z944 binds in the central cavity of CaV3.1 channels, covering the outlet from the ion selectivity filter in a similar way as verapamil and diltiazem binding to CaVAb and CaV1 channels. In this position, Z944 would block ion permeation physically and completely inhibit channel function. A detailed analysis of the specific interactions reveals some overlap with the positions of amino acid residues in the CaVAb and CaV1.1 channels that bind the pore blockers verapamil and diltiazem (Fig. 4c–f). Mutation of some of these key residues reduces the affinity for block of ion current, confirming the essential role of these amino acid side chains in drug binding (Fig. 4e). These overlapping regions of drug binding in CaVAb, CaV1, and CaV3 channels are also similar to the binding sites for local anesthetic and antiarrhythmic drugs that have been characterized in NaVAb and the mammalian cardiac sodium channel NaV1.5 (Gamal El-Din et al., 2018; Jiang et al., 2020, 2021; Li et al., 2021), revealing a common mechanism for the molecular pharmacology of these diverse sodium- and calcium-channel blockers.
Conclusion
From the initial discoveries of the calcium antagonist drugs in the 1970s through drug screening studies with vascular smooth muscle (Fleckenstein, 1983; Godfraind, 2017), the pharmacology of calcium channels has grown as a field to include clinical uses in cardiovascular diseases such as hypertension, angina pectoris, and cardiac arrhythmia, and in neurological diseases such as epilepsy and chronic pain. These drugs were instrumental in the initial identification, purification, and reconstitution of skeletal muscle calcium channels (see chapter 2 “Subunit Architecture and Atomic Structure of Voltage Gated Ca2+ Channels”), which eventually resulted in the determination of high-resolution structures of all three families of calcium channels with drugs bound in their receptor sites as reviewed here. I look forward to exciting new developments in calcium-channel drug discovery and pharmacology based on these basic research findings.
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Acknowledgements
Research in my laboratory on sodium and calcium channels is supported by research grants from the National Institutes of Health: R35 NS111573 and R01 HL112808. Special thanks to Dr. Ning Zheng (Professor of Pharmacology, University of Washington, and Investigator of the Howard Hughes Medical Institute), whose deeps insights into structural biology have been crucial in all of our studies of sodium- and calcium-channel structure.
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Catterall, W.A. (2022). Pharmacology of Voltage-Gated Calcium Channels at Atomic Resolution. In: Zamponi, G.W., Weiss, N. (eds) Voltage-Gated Calcium Channels . Springer, Cham. https://doi.org/10.1007/978-3-031-08881-0_25
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