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Hydrodynamic Analysis of Human Kinetochore Complexes During Mitosis

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Mitosis

Part of the book series: Methods in Molecular Biology ((MIMB,volume 545))

Abstract

Hydrodynamic analysis is a powerful tool to dissect the molecular architecture of macromolecular protein assemblies. These techniques have been successfully used in yeast systems but are also well suited to the analysis of protein complexes from human cells. Furthermore, the combination of hydrodynamic analysis with siRNA mediated protein depletion provides an excellent system to probe the composition of protein complexes isolated from human cells. In this chapter we describe the use of these approaches in the analysis of macromolecular protein complexes during mitosis in human cells, using the kinetochore as an example.

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References

  1. Cleveland D.W., Mao Y., Sullivan K.F. (2003) Centromeres and kinetochores: from epigenetics to mitotic checkpoint signalling. Cell. 112, 407–21.

    Article  PubMed  CAS  Google Scholar 

  2. De Wulf P., McAinsh A.D., Sorger P.K. (2003) Hierarchical assembly of the budding yeast kinetochore from multiple subcomplexes. Genes Dev. 17, 2902–21.

    Article  PubMed  Google Scholar 

  3. Schuyler S.C., Pellman D. (2002) Analysis of the size and shape of protein complexes from yeast. Methods Enzymol. 351, 150–68.

    Article  PubMed  CAS  Google Scholar 

  4. Siegel L.M., Monty K.J. (1966) Determination of molecular weights and frictional ratios of proteins in impure systems by use of gel filtration and density gradient centrifugation. Application to crude preparations of sulfite and hydroxylamine reductases. Biochim Biophys Acta. 112, 346–62.

    Article  PubMed  CAS  Google Scholar 

  5. Cohn E.J., Edsall J.T. (1943) Proteins, Amino Acids and Peptides as Ions and Dipolar Ions, Reinhold, New York.

    Google Scholar 

  6. Harding S.E., Cölfen H. (1995) Inversion formulae for ellipsoid of revolution macromolecular shape functions. Anal Biochem. 228, 131–42.

    Article  PubMed  CAS  Google Scholar 

  7. He X., Rines D.R., Espelin C.W., Sorger P.K. (2001) Molecular analysis of kinetochore-microtubule attachment in budding yeast. Cell 106, 195–206.

    Article  PubMed  CAS  Google Scholar 

  8. Nabetani A., Koujin T., Tsutsumi C., Haraguchi T., Hiraoka Y. (2001) A conserved protein, Nuf2, is implicated in connecting the centromere to the spindle during chromosome segregation: a link between the kinetochore function and the spindle checkpoint. Chromosoma 110, 322–34.

    Article  PubMed  CAS  Google Scholar 

  9. DeLuca J.G., Moree B., Hickey J.M., Kilmartin J.V., Salmon E.D. (2002) hNuf2 inhibition blocks stable kinetochore-microtubule attachment and induces mitotic cell death in HeLa cells. J Cell Biol. 159, 549–55.

    Article  PubMed  CAS  Google Scholar 

  10. Wei R.R., Sorger P.K., Harrison S.C. (2005) Molecular organization of the Ndc80 complex, an essential kinetochore component. Proc Natl Acad Sci USA. 102, 5363–7.

    Article  PubMed  CAS  Google Scholar 

  11. Ciferri C., De Luca J., Monzani S., Ferrari K.J., Ristic D., Wyman C., Stark H., Kilmartin J., Salmon E.D., Musacchio A. (2005) Architecture of the human ndc80-hec1 complex, a critical constituent of the outer kinetochore. J Biol Chem. 280, 29088–95.

    Article  PubMed  CAS  Google Scholar 

  12. McAinsh A.D., Meraldi P., Draviam V.M., Toso A., Sorger P.K. (2006) The human kinetochore proteins Nnf1R and Mcm21R are required for accurate chromosome segregation. EMBO J. 25, 4033–49.

    Article  PubMed  CAS  Google Scholar 

  13. McClelland S.E., Borusu S., Amaro A.C., Winter J.R., Belwal M., McAinsh A.D., Meraldi P. (2007) The CENP-A NAC/CAD kinetochore complex controls chromosome congression and spindle bipolarity. EMBO J. 26, 5033–47.

    Article  PubMed  CAS  Google Scholar 

  14. Kline S.L., Cheeseman I.M., Hori T., Fukagawa T., Desai A. (2006) The human Mis12 complex is required for kinetochore assembly and proper chromosome segregation. J Cell Biol. 173, 9–17.

    Article  PubMed  CAS  Google Scholar 

  15. Goshima G., Kiyomitsu T., Yoda K., Yanagida M. (2003) Human centromere chromatin protein hMis12, essential for equal segregation, is independent of CENP-A loading pathway. J Cell Biol. 160, 25–39.

    Article  PubMed  CAS  Google Scholar 

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Acknowledgments

The authors would like to thank the members of the McAinsh lab for helpful discussions and reading of the manuscript. We would also like to thank Hiro Yamano for equipment and expertise relating to the glycerol gradient ultracentrifugation experiments. This work was supported by Marie Curie Cancer Care.

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© 2009 Humana Press, a part of Springer Science+Business Media, LLC

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McClelland, S.E., McAinsh, A.D. (2009). Hydrodynamic Analysis of Human Kinetochore Complexes During Mitosis. In: McAinsh, A. (eds) Mitosis. Methods in Molecular Biology, vol 545. Humana Press. https://doi.org/10.1007/978-1-60327-993-2_5

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  • DOI: https://doi.org/10.1007/978-1-60327-993-2_5

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  • Publisher Name: Humana Press

  • Print ISBN: 978-1-60327-992-5

  • Online ISBN: 978-1-60327-993-2

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