Skip to main content

Enzymatic Assembly for scFv Library Construction

  • Protocol
  • First Online:
Synthetic Antibodies

Part of the book series: Methods in Molecular Biology ((MIMB,volume 1575))

Abstract

Recombinant monoclonal antibodies can be established by displaying single-chain variable fragment (scFv) antibody libraries on phages and then biopanning against the target. For constructing superior scFv libraries, antibody light-chain variable region (VL) and heavy-chain variable region (VH) fragments must be assembled into scFvs without loss of diversity. A high-quality scFv library is a prerequisite for obtaining strong binders from the scFv library. However, the technical challenges associated with the construction of a diverse library have been the bottleneck in the establishment of recombinant antibodies through biopanning. Here, we describe a simple and efficient method for assembling VL and VH fragments through the concerted action of λ-exonuclease and Bst DNA polymerase. We successfully used this method to construct a diverse chicken scFv library.

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Subscribe and save

Springer+ Basic
$34.99 /Month
  • Get 10 units per month
  • Download Article/Chapter or eBook
  • 1 Unit = 1 Article or 1 Chapter
  • Cancel anytime
Subscribe now

Buy Now

Protocol
USD 49.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD 99.00
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD 129.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info
Hardcover Book
USD 199.99
Price excludes VAT (USA)
  • Durable hardcover edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

Similar content being viewed by others

Abbreviations

scFv:

Single-chain variable fragment

VL :

Light-chain variable region

VH:

Heavy-chain variable region

CDR:

Complementarity-determining region

References

  1. Hoogenboom HR (2005) Selecting and screening recombinant antibody libraries. Nat Biotechnol 23:1105–1116

    Article  CAS  PubMed  Google Scholar 

  2. Kato M, Hanyu Y (2015) Screening technologies for recombinant antibody libraries. Med Res Arch 2:12–18

    Article  Google Scholar 

  3. McCafferty J, Griffiths AD, Winter G et al (1990) Phage antibodies: filamentous phage displaying antibody variable domains. Nature 348:552–554

    Article  CAS  PubMed  Google Scholar 

  4. Chen G, Sidhu SS (2014) Design and generation of synthetic antibody libraries for phage display. Methods Mol Biol (Clifton, N.J.) 1131:113–131

    Article  CAS  Google Scholar 

  5. Chan CEZ, Chan AHY, Lim APC et al (2011) Comparison of the efficiency of antibody selection from semi-synthetic scFv and non-immune Fab phage display libraries against protein targets for rapid development of diagnostic immunoassays. J Immunol Methods 373:79–88

    Article  CAS  PubMed  Google Scholar 

  6. Griffiths AD, Williams SC, Hartley O et al (1994) Isolation of high affinity human antibodies directly from large synthetic repertoires. EMBO J 13:3245–3260

    CAS  PubMed  PubMed Central  Google Scholar 

  7. Müller D (2010) scFv by two-step cloning. In: Kontermann R, Dübel S (eds) Antibody engineering. Springer, Berlin Heidelberg, pp 55–59

    Chapter  Google Scholar 

  8. Krebber A, Bornhauser S, Burmester J et al (1997) Reliable cloning of functional antibody variable domains from hybridomas and spleen cell repertoires employing a reengineered phage display system. J Immunol Methods 201:35–55

    Article  CAS  PubMed  Google Scholar 

  9. Schaefer JV, Honegger A, Plückthun A (2010) Construction of scFv fragments from hybridoma or spleen cells by PCR assembly. In: Kontermann R, Dübel S (eds) Antibody engineering. Springer, Berlin Heidelberg, pp 21–44

    Chapter  Google Scholar 

  10. Kato M, Hanyu Y (2013) Construction of an scFv library by enzymatic assembly of VL and VH genes. J Immunol Methods 396:15–22

    Article  CAS  PubMed  Google Scholar 

  11. Andris-Widhopf J, Rader C, Steinberger P et al (2000) Methods for the generation of chicken monoclonal antibody fragments by phage display. J Immunol Methods 242:159–181

    Article  CAS  PubMed  Google Scholar 

  12. Andris-Widhopf J, Steinberger P, Fuller R et al (2001) Generation of antibody libraries: PCR amplification and assembly of light- and heavy-chain coding sequences. In: Barbas Iii CF, Burton DR, Scott JK et al (eds) Phage display: a laboratory manual. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New York, pp 102–109

    Google Scholar 

  13. Subramanian K, Rutvisuttinunt W, Scott W et al (2003) The enzymatic basis of processivity in Lambda exonuclease. Nucleic Acids Res 31:1585–1596

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  14. Notomi T, Okayama H, Masubuchi H et al (2000) Loop-mediated isothermal amplification of DNA. Nucleic Acids Res 28:E63

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  15. Gibson DG (2011) Enzymatic assembly of overlapping DNA fragments. Methods Enzymol 498:349–361

    Article  CAS  PubMed  Google Scholar 

  16. Sepulveda J, Shoemaker CB (2008) Design and testing of PCR primers for the construction of scFv libraries representing the immunoglobulin repertoire of rats. J Immunol Methods 332:92–102

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  17. Kortt AA, Lah M, Oddie GW et al (1997) Single-chain Fv fragments of anti-neuraminidase antibody NC10 containing five- and ten-residue linkers form dimers and with zero-residue linker a trimer. Protein Eng 10:423–433

    Article  CAS  PubMed  Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Yoshiro Hanyu .

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 2017 Springer Science+Business Media LLC

About this protocol

Cite this protocol

Kato, M., Hanyu, Y. (2017). Enzymatic Assembly for scFv Library Construction. In: Tiller, T. (eds) Synthetic Antibodies. Methods in Molecular Biology, vol 1575. Humana Press, New York, NY. https://doi.org/10.1007/978-1-4939-6857-2_3

Download citation

  • DOI: https://doi.org/10.1007/978-1-4939-6857-2_3

  • Published:

  • Publisher Name: Humana Press, New York, NY

  • Print ISBN: 978-1-4939-6855-8

  • Online ISBN: 978-1-4939-6857-2

  • eBook Packages: Springer Protocols

Publish with us

Policies and ethics