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Measuring Gene Expression via mRNA Abundance in Candida auris

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Candida auris

Part of the book series: Methods in Molecular Biology ((MIMB,volume 2517))

Abstract

The recently emerged human pathogenic yeast Candida auris has become a major global threat. As compared to other Candida species, C. auris often displays a high level of resistance to commonly used antifungals and poses additional therapeutic challenges. There is a great need to understand the molecular basis of its success as a drug-resistant human pathogen. The study of condition-specific gene expression can provide good cues of regulatory circuitry governing high drug resistance. Here, we describe the protocol of quantitative reverse transcription PCR (RT–qPCR) which can be conveniently employed as a highly reproducible method for measuring individual transcripts in C. auris cells.

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References

  1. Muñoz JF, Gade L, Chow NA et al (2018) Genomic insights into multidrug-resistance, mating and virulence in Candida auris and related emerging species. Nat Commun 9:5346. https://doi.org/10.1038/s41467-018-07779-6

    Article  PubMed  PubMed Central  CAS  Google Scholar 

  2. Wasi M, Khandelwal NK, Moorhouse AJ et al (2019) ABC transporter genes show upregulated expression in drug-resistant clinical isolates of Candida auris: a genome-wide characterization of ATP-binding cassette (ABC) transporter genes. Front Microbiol 10:1445. https://doi.org/10.3389/fmicb.2019.01445

    Article  PubMed  PubMed Central  Google Scholar 

  3. Udvardi MK, Czechowski T, Scheible W-R (2008) Eleven golden rules of quantitative RT-PCR. Plant Cell 20:1736–1737

    Article  CAS  Google Scholar 

  4. Wiame I, Remy S, Swennen R, Sági L (2000) Irreversible heat inactivation of DNase I without RNA degradation. BioTechniques 29:252–254, 256. https://doi.org/10.2144/00292bm11

    Article  PubMed  CAS  Google Scholar 

  5. Higuchi R, Dollinger G, Walsh PS, Griffith R (1992) Simultaneous amplification and detection of specific DNA sequences. Biotechnology (N Y) 10:413–417. https://doi.org/10.1038/nbt0492-413

    Article  CAS  Google Scholar 

  6. Higuchi R, Fockler C, Dollinger G, Watson R (1993) Kinetic PCR analysis: real-time monitoring of DNA amplification reactions. Biotechnology (N Y) 11:1026–1030. https://doi.org/10.1038/nbt0993-1026

    Article  CAS  Google Scholar 

  7. Livak KJ, Schmittgen TD (2001) Analysis of relative gene expression data using real-time quantitative PCR and the 2−ΔΔCT method. Methods 25:402–408. https://doi.org/10.1006/meth.2001.1262

    Article  PubMed  CAS  Google Scholar 

  8. Zhang J, Byrne CD (1999) Differential priming of RNA templates during cDNA synthesis markedly affects both accuracy and reproducibility of quantitative competitive reverse-transcriptase PCR. Biochem J 337(Pt 2):231–241

    Article  CAS  Google Scholar 

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Wasi, M., Nair, R., Khandelwal, N.K., Prasad, R. (2022). Measuring Gene Expression via mRNA Abundance in Candida auris. In: Lorenz, A. (eds) Candida auris. Methods in Molecular Biology, vol 2517. Humana, New York, NY. https://doi.org/10.1007/978-1-0716-2417-3_11

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  • DOI: https://doi.org/10.1007/978-1-0716-2417-3_11

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  • Publisher Name: Humana, New York, NY

  • Print ISBN: 978-1-0716-2416-6

  • Online ISBN: 978-1-0716-2417-3

  • eBook Packages: Springer Protocols

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