Efficient Methods for Estimating Amino Acid Replacement Rates Lars Arvestad OriginalPaper 28 April 2006 Pages: 663 - 673
Protein Targeting into the Complex Plastid of Cryptophytes Sven B. GouldMaik S. SommerUwe-G. Maier OriginalPaper 28 April 2006 Pages: 674 - 681
Testing for Spatial Clustering of Amino Acid Replacements Within Protein Tertiary Structure Jiaye YuJeffrey L. Thorne OriginalPaper 25 April 2006 Pages: 682 - 692
A Genomic Comparison of Faster-Sex, Faster-X, and Faster-Male Evolution Between Drosophila melanogaster and Drosophila pseudoobscura Heidi MustersMelanie A. HuntleyRama S. Singh OriginalPaper 11 April 2006 Pages: 693 - 700
Evolutionary History of the Vertebrate Period Genes Malcolm von SchantzAaron JenkinsSimon N. Archer OriginalPaper 28 April 2006 Pages: 701 - 707
A Revised Evolutionary History of the CYP1A Subfamily: Gene Duplication, Gene Conversion, and Positive Selection Heather M. H. GoldstoneJohn J. Stegeman OriginalPaper 28 April 2006 Pages: 708 - 717
The Repetitive DNA Elements Called CRISPRs and Their Associated Genes: Evidence of Horizontal Transfer Among Prokaryotes James S. GoddeAmanda Bickerton OriginalPaper 11 April 2006 Pages: 718 - 729
Molecular Evolution of the Periphilin Gene in Relation to Human Endogenous Retrovirus M Element Jae-Won HuhTae-Hyung KimHeui-Soo Kim OriginalPaper 11 April 2006 Pages: 730 - 737
Rapid Adaptive Evolution of the Tumor Suppressor Gene Pten in an Insect Lineage E. BaudryM. DesmadrilJ.H. Werren OriginalPaper 11 April 2006 Pages: 738 - 744
GC Content Evolution of the Human and Mouse Genomes: Insights from the Study of Processed Pseudogenes in Regions of Different Recombination Rates Adel KhelifiJulien MeunierDominique Mouchiroud OriginalPaper 28 April 2006 Pages: 745 - 752
Molecular Evolution at the Cytochrome Oxidase Subunit 2 Gene Among Divergent Populations of the Intertidal Copepod, Tigriopus californicus Paul D. RawsonRonald S. Burton OriginalPaper 28 April 2006 Pages: 753 - 764
On the Paucity of Duplicated Genes in Caenorhabditis elegans Operons Andre R.O. CavalcantiNicholas A. StoverLaura F. Landweber OriginalPaper 28 April 2006 Pages: 765 - 771
Novel Relationships Among Ten Fish Model Species Revealed Based on a Phylogenomic Analysis Using ESTs Dirk SteinkeWalter SalzburgerAxel Meyer OriginalPaper 11 May 2006 Pages: 772 - 784
Relaxed Neighbor Joining: A Fast Distance-Based Phylogenetic Tree Construction Method Jason EvansLuke ShenemanJames Foster OriginalPaper 28 April 2006 Pages: 785 - 792
Positive Selection on Nucleotide Substitutions and Indels in Accessory Gland Proteins of the Drosophila pseudoobscura Subgroup Sheri Dixon SchullyMichael E. Hellberg OriginalPaper 28 April 2006 Pages: 793 - 802
The GC Content of Primates and Rodents Genomes Is Not at Equilibrium: A Reply to Antezana Laurent Duret OriginalPaper 11 May 2006 Pages: 803 - 806
The Histidine Operon Is Ancient Morgan N. PriceEric J. AlmAdam P. Arkin Letter to the Editor 11 April 2006 Pages: 807 - 808
A Sequential “2-1-3” Model of Genetic Code Evolution That Explains Codon Constraints Steven E. Massey Letter to the Editor 11 April 2006 Pages: 809 - 810