Volume 21, issue 1, December 2020
842 articles in this issue
-
-
Comparison of the central human and mouse platelet signaling cascade by systems biological analysis
Authors (first, second and last of 7)
- Johannes Balkenhol
- Kristin V. Kaltdorf
- Thomas Dandekar
- Content type: Research article
- Open Access
- Published: 22 December 2020
- Article: 897
This is part of 1 collection: -
Correction to: Predicting and clustering plant CLE genes with a new method developed specifically for short amino acid sequences
Authors (first, second and last of 7)
- Zhe Zhang
- Lei Liu
- Bo Zheng
- Content type: Correction
- Open Access
- Published: 18 December 2020
- Article: 895
-
Improving CLIP-seq data analysis by incorporating transcript information
Authors
- Michael Uhl
- Van Dinh Tran
- Rolf Backofen
- Content type: Research article
- Open Access
- Published: 17 December 2020
- Article: 894
This is part of 1 collection: -
Identification of the neuropeptide precursor genes potentially involved in the larval settlement in the Echiuran worm Urechis unicinctus
Authors (first, second and last of 9)
- Xitan Hou
- Zhenkui Qin
- Zhifeng Zhang
- Content type: Research article
- Open Access
- Published: 14 December 2020
- Article: 892
This is part of 1 collection: -
Transcriptome analysis reveals modulation of the STAT family in PEDV-infected IPEC-J2 cells
Authors (first, second and last of 7)
- Zhengzheng Hu
- Yuchen Li
- Jianfeng Liu
- Content type: Research article
- Open Access
- Published: 14 December 2020
- Article: 891
This is part of 1 collection: -
Comparative evaluation for the globin gene depletion methods for mRNA sequencing using the whole blood-derived total RNAs
Authors (first, second and last of 8)
- Jin Sung Jang
- Brianna Berg
- Julie M. Cuninngham
- Content type: Methodology article
- Open Access
- Published: 11 December 2020
- Article: 890
This is part of 1 collection: -
RNA sequencing identifies transcriptional changes in the rabbit larynx in response to low humidity challenge
Authors (first, second and last of 7)
- Taylor W. Bailey
- Andrea Pires dos Santos
- Abigail Cox
- Content type: Research article
- Open Access
- Published: 11 December 2020
- Article: 888
This is part of 1 collection: -
A highly contiguous genome assembly of Brassica nigra (BB) and revised nomenclature for the pseudochromosomes
Authors
- Kumar Paritosh
- Akshay Kumar Pradhan
- Deepak Pental
- Content type: Research article
- Open Access
- Published: 11 December 2020
- Article: 887
This is part of 1 collection: -
Proteome sequencing and analysis of Ophiocordyceps sinensis at different culture periods
Authors (first, second and last of 12)
- Bo Zhang
- Bo Li
- Yu-Guo Zheng
- Content type: Research article
- Open Access
- Published: 11 December 2020
- Article: 886
This is part of 1 collection: -
Glucose-lactose mixture feeds in industry-like conditions: a gene regulatory network analysis on the hyperproducing Trichoderma reesei strain Rut-C30
Authors (first, second and last of 8)
- Aurélie Pirayre
- Laurent Duval
- Frédérique Bidard
- Content type: Research article
- Open Access
- Published: 10 December 2020
- Article: 885
This is part of 1 collection: -
RBPsuite: RNA-protein binding sites prediction suite based on deep learning
Authors (first, second and last of 5)
- Xiaoyong Pan
- Yi Fang
- Hong-Bin Shen
- Content type: Software
- Open Access
- Published: 09 December 2020
- Article: 884
This is part of 1 collection: -
Transcriptome profiling revealed early vascular smooth muscle cell gene activation following focal ischemic stroke in female rats – comparisons with males
Authors (first, second and last of 4)
- Mimmi Rehnström
- Simona Denise Frederiksen
- Lars Edvinsson
- Content type: Research article
- Open Access
- Published: 09 December 2020
- Article: 883
This is part of 1 collection: -
Yes, we can use it: a formal test on the accuracy of low-pass nanopore long-read sequencing for mitophylogenomics and barcoding research using the Caribbean spiny lobster Panulirus argus
Authors
- J. Antonio Baeza
- Content type: Methodology article
- Open Access
- Published: 09 December 2020
- Article: 882
This is part of 1 collection: -
Hepatic transcriptome and DNA methylation patterns following perinatal and chronic BPS exposure in male mice
Authors (first, second and last of 5)
- Axelle Brulport
- Daniel Vaiman
- Ludovic Le Corre
- Content type: Research article
- Open Access
- Published: 09 December 2020
- Article: 881
This is part of 1 collection: -
Comparative proteomics of three Chinese potato cultivars to improve understanding of potato molecular response to late blight disease
Authors (first, second and last of 10)
- Chunfang Xiao
- Mengling Huang
- Yanfen Shen
- Content type: Research article
- Open Access
- Published: 09 December 2020
- Article: 880
This is part of 1 collection: -
Identification of oligo-adenylated small RNAs in the parasite Entamoeba and a potential role for small RNA control
Authors (first, second and last of 4)
- Hanbang Zhang
- Gretchen M. Ehrenkaufer
- Upinder Singh
- Content type: Research article
- Open Access
- Published: 09 December 2020
- Article: 879
This is part of 1 collection: -
Correction to: Molecular signature comprising 11 platelet-genes enables accurate blood-based diagnosis of NSCLC
Authors (first, second and last of 10)
- Chitrita Goswami
- Smriti Chawla
- Debarka Sengupta
- Content type: Correction
- Open Access
- Published: 08 December 2020
- Article: 877
-
Different classes of small RNAs are essential for head regeneration in the planarian Dugesia japonica
Authors (first, second and last of 8)
- Zhonghong Cao
- David Rosenkranz
- Bosheng Zhao
- Content type: Research article
- Open Access
- Published: 07 December 2020
- Article: 876
This is part of 1 collection: -
Transcriptome profiles of sturgeon lateral line electroreceptor and mechanoreceptor during regeneration
Authors (first, second and last of 6)
- Jian Wang
- Chengcheng Lu
- Chunxin Fan
- Content type: Research article
- Open Access
- Published: 07 December 2020
- Article: 875
This is part of 1 collection: -
New view on the organization and evolution of Palaeognathae mitogenomes poses the question on the ancestral gene rearrangement in Aves
Authors
- Adam Dawid Urantówka
- Aleksandra Kroczak
- Paweł Mackiewicz
- Content type: Research article
- Open Access
- Published: 07 December 2020
- Article: 874
This is part of 1 collection: -
Genomic targets for high-resolution inference of kinship, ancestry and disease susceptibility in orang-utans (genus: Pongo)
Authors (first, second and last of 9)
- Graham L. Banes
- Emily D. Fountain
- George F. Mayhew
- Content type: Research article
- Open Access
- Published: 07 December 2020
- Article: 873
This is part of 1 collection: -
Comparative transcriptome analysis of three gonadal development stages reveals potential genes involved in gametogenesis of the fluted giant clam (Tridacna squamosa)
Authors (first, second and last of 11)
- Jun Li
- Yinyin Zhou
- Ziniu Yu
- Content type: Research article
- Open Access
- Published: 07 December 2020
- Article: 872
This is part of 1 collection: -
Genome-wide characterization, expression analyses, and functional prediction of the NPF family in Brassica napus
Authors (first, second and last of 10)
- Jing Wen
- Peng-Feng Li
- Hai Du
- Content type: Research article
- Open Access
- Published: 07 December 2020
- Article: 871
This is part of 1 collection: -
Bioinformatic analysis and functional predictions of selected regeneration-associated transcripts expressed by zebrafish microglia
Authors
- Ousseini Issaka Salia
- Diana M. Mitchell
- Content type: Research article
- Open Access
- Published: 07 December 2020
- Article: 870
This is part of 1 collection: -
The patterns of admixture, divergence, and ancestry of African cattle populations determined from genome-wide SNP data
Authors (first, second and last of 5)
- N. Z. Gebrehiwot
- E. M. Strucken
- J. P. Gibson
- Content type: Research article
- Open Access
- Published: 07 December 2020
- Article: 869
This is part of 1 collection: -
New insights into the evolution and functional divergence of the CIPK gene family in Saccharum
Authors (first, second and last of 11)
- Weihua Su
- Yongjuan Ren
- Youxiong Que
- Content type: Research article
- Open Access
- Published: 07 December 2020
- Article: 868
This is part of 1 collection: -
High-throughput profiling of diapause regulated genes from Trichogramma dendrolimi (Hymenoptera: Trichogrammatidae)
Authors (first, second and last of 5)
- Xue Zhang
- Wenmei Du
- Changchun Ruan
- Content type: Research article
- Open Access
- Published: 04 December 2020
- Article: 864
This is part of 1 collection: -
A rapid, cost-effective tailed amplicon method for sequencing SARS-CoV-2
Authors (first, second and last of 9)
- Daryl M. Gohl
- John Garbe
- Kenneth B. Beckman
- Content type: Methodology article
- Open Access
- Published: 04 December 2020
- Article: 863
This is part of 1 collection: -
Efficient COI barcoding using high throughput single-end 400 bp sequencing
Authors (first, second and last of 15)
- Chentao Yang
- Yuxuan Zheng
- Shanlin Liu
- Content type: Methodology article
- Open Access
- Published: 04 December 2020
- Article: 862
This is part of 1 collection: -
Physiological and transcriptomic analyses reveal the roles of secondary metabolism in the adaptive responses of Stylosanthes to manganese toxicity
Authors (first, second and last of 10)
- Yidan Jia
- Xinyong Li
- Zhijian Chen
- Content type: Research article
- Open Access
- Published: 03 December 2020
- Article: 861
This is part of 1 collection: -
Transcriptomic and proteomic analyses of a new cytoplasmic male sterile line with a wild Gossypium bickii genetic background
Authors (first, second and last of 7)
- Haiyan Zhao
- Jianshe Wang
- Jinling Huang
- Content type: Research article
- Open Access
- Published: 02 December 2020
- Article: 859
This is part of 1 collection: -
Metabolomic and transcriptomic analyses of mutant yellow leaves provide insights into pigment synthesis and metabolism in Ginkgo biloba
Authors (first, second and last of 5)
- Yaqiong Wu
- Jing Guo
- Guibin Wang
- Content type: Research article
- Open Access
- Published: 02 December 2020
- Article: 858
This is part of 1 collection: -
Identification of a quantitative trait loci (QTL) associated with ammonia tolerance in the Pacific white shrimp (Litopenaeus vannamei)
Authors (first, second and last of 13)
- Digang Zeng
- Chunling Yang
- Yongzhen Zhao
- Content type: Research article
- Open Access
- Published: 02 December 2020
- Article: 857
This is part of 1 collection: -
Detection of CRISPR-mediated genome modifications through altered methylation patterns of CpG islands
Authors (first, second and last of 7)
- M. Heath Farris
- Pamela A. Texter
- Kristine Rosfjord
- Content type: Methodology article
- Open Access
- Published: 02 December 2020
- Article: 856
This is part of 1 collection: -
Characteristics of the completed chloroplast genome sequence of Xanthium spinosum: comparative analyses, identification of mutational hotspots and phylogenetic implications
Authors (first, second and last of 4)
- Gurusamy Raman
- Kyu Tae Park
- SeonJoo Park
- Content type: Research article
- Open Access
- Published: 02 December 2020
- Article: 855
This is part of 1 collection: -
Moose genomes reveal past glacial demography and the origin of modern lineages
Authors (first, second and last of 21)
- Nicolas Dussex
- Federica Alberti
- David Díez-del-Molino
- Content type: Research article
- Open Access
- Published: 02 December 2020
- Article: 854
This is part of 1 collection: -
Genome-wide identification and characterization of long non-coding RNAs related to grain yield in foxtail millet [Setaria italica (L.) P. Beauv.]
Authors (first, second and last of 8)
- Zilong Zhao
- Dan Liu
- Zhengli Liu
- Content type: Research article
- Open Access
- Published: 01 December 2020
- Article: 853
This is part of 1 collection: -
Intricate genetic variation networks control the adventitious root growth angle in apple
Authors (first, second and last of 7)
- Caixia Zheng
- Fei Shen
- Zhenhai Han
- Content type: Research article
- Open Access
- Published: 01 December 2020
- Article: 852
This is part of 1 collection: -
Comparative genomics in “Candidatus Kuenenia stuttgartiensis” reveal high genomic plasticity in the overall genome structure, CRISPR loci and surface proteins
Authors
- Chang Ding
- Lorenz Adrian
- Content type: Research article
- Open Access
- Published: 01 December 2020
- Article: 851
This is part of 1 collection: -
Comparative transcriptome analysis of male and female flowers in Spinacia oleracea L
Authors (first, second and last of 8)
- Ning Li
- Ziwei Meng
- Chuanliang Deng
- Content type: Research article
- Open Access
- Published: 01 December 2020
- Article: 850
This is part of 1 collection: -
Whole genome sequencing identified a 16 kilobase deletion on ECA13 associated with distichiasis in Friesian horses
Authors (first, second and last of 12)
- E. A. Hisey
- H. Hermans
- R. R. Bellone
- Content type: Research article
- Open Access
- Published: 30 November 2020
- Article: 848
This is part of 1 collection: -
Virulence characterization and comparative genomics of Listeria monocytogenes sequence type 155 strains
Authors (first, second and last of 10)
- Eva Wagner
- Andreas Zaiser
- Kathrin Rychli
- Content type: Research article
- Open Access
- Published: 30 November 2020
- Article: 847
This is part of 1 collection: -
A general index for linear and nonlinear correlations for high dimensional genomic data
Authors
- Zhihao Yao
- Jing Zhang
- Xiufen Zou
- Content type: Methodology article
- Open Access
- Published: 30 November 2020
- Article: 846
This is part of 1 collection: -
Deep sampling and pooled amplicon sequencing reveals hidden genic variation in heterogeneous rye accessions
Authors (first, second and last of 9)
- Anna Hawliczek
- Leszek Bolibok
- Hanna Bolibok-Brągoszewska
- Content type: Research article
- Open Access
- Published: 30 November 2020
- Article: 845
This is part of 1 collection: -
Competitive mapping allows for the identification and exclusion of human DNA contamination in ancient faunal genomic datasets
Authors (first, second and last of 15)
- Tatiana R. Feuerborn
- Eleftheria Palkopoulou
- David Díez-del-Molino
- Content type: Methodology article
- Open Access
- Published: 30 November 2020
- Article: 844
This is part of 1 collection: -
Differential gene expression analysis reveals pathways important in early post-traumatic osteoarthritis in an equine model
Authors (first, second and last of 5)
- Annette M. McCoy
- Ann M. Kemper
- Troy N. Trumble
- Content type: Research article
- Open Access
- Published: 30 November 2020
- Article: 843
This is part of 1 collection: -
Highly diversified core promoters in the human genome and their effects on gene expression and disease predisposition
Authors (first, second and last of 8)
- Hemant Gupta
- Khyati Chandratre
- San Ming Wang
- Content type: Research article
- Open Access
- Published: 30 November 2020
- Article: 842
This is part of 1 collection: -
Unexpected diversity of CRISPR unveils some evolutionary patterns of repeated sequences in Mycobacterium tuberculosis
Authors
- Guislaine Refrégier
- Christophe Sola
- Christophe Guyeux
- Content type: Research article
- Open Access
- Published: 30 November 2020
- Article: 841
This is part of 1 collection: -
Identification and population genetic analyses of copy number variations in six domestic goat breeds and Bezoar ibexes using next-generation sequencing
Authors (first, second and last of 8)
- Jiazhong Guo
- Jie Zhong
- Hongping Zhang
- Content type: Research article
- Open Access
- Published: 27 November 2020
- Article: 840
This is part of 1 collection: