Abstract
In the present work, a highly sensitive SPR biosensor based on silver (Ag), barium titanate (BaTiO3), graphene, and affinity layer is proposed for the detection of Pseudomonas bacteria. The performance of this proposed sensor has been numerically studied and analyzed for sensitivity, quality parameter, and detection accuracy. The proposed structure used attenuated total reflection (ATR) approach based on the Kretschmann configuration for the investigation of performance parameters. The inclusion of the BaTiO3 layer along with the affinity layer shows the enhancement in the performance of the proposed structure for the detection of Pseudomonas bacteria. A comparison of the proposed structure is drawn with contemporary surface plasmon resonance (SPR) biosensors for the detection of Pseudomonas bacteria, and better performance was shown. This work reports that the maximum sensitivity, quality parameter, and detection accuracy for the proposed sensor are 220 degree/RIU, 101.38 RIU−1, and 7.09 respectively. Therefore, the proposed design finds its application in Pseudomonas bacterial detection as well as opens a new window in the biosensing area.
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Introduction
The genus Pseudomonas is a pervasive opportunistic pathogen widely found in soil, water, and nature. Most of the Pseudomonas species are saprophytic but some are linked with humans. These Pseudomonas species are the major cause of opportunistic infections in humans. The high fatality associated with such infections is due to the weakened antibiotic resistance, immune responses, and production of bacterial exoenzymes. Contaminated water and food are the possible ways of transmission of such bacteria [1,2,3]. A lot of research has been done already for the detection of this opportunistic bacteria. The surface plasmon resonance (SPR)-based sensors are increasing in demand in biosensing due to label-free sensing. Some of the biosensors based on SPR are already available for the detection of Pseudomonas bacteria but the advancement is still a prerequisite for the researchers [4,5,6]. In SPR-based biosensor, charge density oscillations of free electrons are generated at the interface of metal-dielectric surface, which are known as surface plasmons (SPs) and these can be excited by an incident light beam. This gives the formation of the evanescent wave that exponential decays along with the interface of the metal-dielectric surface. This collective event is known as surface plasmon resonance [7]. In recent years, SPR-based biosensors have received global attention from the wider scientific community due to their wide range of applications in the fields of biochemistry, environmental monitoring, and medicine, etc. [8,9,10]. In conventional prism-based SPR biosensor with a single metal, the sensitivity is low for the angular interrogation method but higher sensitivity is the ultimate goal of all researchers. Lately, SPR biosensors with a hybrid configuration of materials have been seen in research to improve the performance of SPR biosensors. These configurations of materials are the various combinations of metals and dielectrics depending upon the applications of SPR biosensors. In recent years, transition metal dichalcogenides (TMDCs) 2D nanomaterials, such as molybdenum disulfide (MoS2), tungsten diselenide (WSe2), and tungsten disulfide (WS2), have been seen in SPR biosensing due to their remarkable optical properties [11,12,13]. The bonding of Pseudomonas with an affinity layer is an essential phenomenon for sensing. A large number of Pseudomonas bacterial attachment over the affinity layer was found for carbon sources toluene, nicotine, etc., as well as hydrophobic plastic especially polyethylene, Teflon, polystyrene, poly (ethylene terephthalate), etc., with no or little surface charge, while a moderate amount of Pseudomonas bacterial attachment to hydrophilic metals was found with a positive surface charge for platinum or neutral surface charge for germanium. Along with this, very little bacterial attachment was found for hydrophilic, negatively charged substrate (mica, glass, oxidized plastics) [14]. Lately, nanomaterials have been seen in emerging trends for biosensing due to a large surface area to volume ratio. Graphene is a nanomaterial of a single atomic layer, in which sp2-hybridized carbon atoms are tightly packed in a 2D honeycomb lattice structure. The physical and structural characteristics of this material make graphene a promising nanomaterial in the biosensing field. The large surface area and strong interaction of π stacking with hexagonal cells show a very high absorption capability of the graphene layer. This makes graphene a suitable material for biomolecule adsorption [15,16,17]. The shifting of the resonance angle is a crucial phenomenon in the SPR sensor for enhancing the sensor performance. However, zinc oxide (ZnO) was utilized for improving the sensor performance but the large full width half maxima (FWHM) and the lower sensitivity are still major concerns in these structures [18, 19]. Recently, BaTiO3 with remarkable properties, like low dielectric losses, high refractive index, and high dielectric constant, has been considered for improvement in sensor performance for a small variation of refractive index in sensing medium [20,21,22]. The dielectric constant of metals plays a vital role in the selection of SPR active metals. However, gold (Au) is preferred over Ag due to high chemical stability and resistivity for oxidation but poor molecule binding ability of the Au layer limits the performance of the Au-based SPR sensor [12, 23, 24]. In the current study, we have used a BaTiO3 layer between the silver and graphene layers: three affinity layers, namely nicotine, toluene, and poly (trifluoroethyl methacrylate) with graphene for Pseudomonas detection in the proposed structure.
The proposed sensor structure with different affinity layers may be suitable in the detection of other water-contaminating bacteria Escherichia coli, Salmonella, etc., but in the current study, we have focused on the Pseudomonas bacterial detection. Various performance parameters such as sensitivity, quality parameter, and detection accuracy are obtained for the proposed structure to exhibit its performance.
This paper is structured as follows: section 2 gives the design consideration and methodology of the proposed sensor structure. The result and discussion for the proposed structure have been described in section 3. Section 4 gives the conclusion of this work.
Structure Consideration and Methodology
The structure of the proposed biosensor is shown in Fig. 1a. In our design, we have used a BK7 glass prism to couple light and He-Ne laser of λ = 633 nm wavelength as a light source. The value of the refractive index of BK7 glass prism is 1.5151 which can be calculated by the following relation [25]:
The design consists of silver as a first layer having a thickness (dAg) of 50 nm grown on BK7 glass prism. The refractive index of this layer is 0.056206 + 4.2776i [26].
The barium titanate is further deposited as the second layer over the silver layer. The optimum value of the thickness of this layer is dBaTiO3 = 5 nm. The refractive index of this layer is 2.4042 [27]. Further, the third layer graphene having a thickness (dgraphene) of 0.34 nm is deposited over barium titanate. The value of the refractive index (ngraphene) of graphene can be obtained from the following relation [28]:
Where the value of constant C is 5.446 μm−1.
The detection mechanism involves the adsorption of Pseudomonas bacteria on the surface of the graphene layer with the help of the affinity layer. In our proposed SPR structure, the sensing medium is chosen as water having a refractive index of 1.33. The refractive index of the sensing medium varies from 1.33 to 1.40 due to the presence of Pseudomonas bacteria and this variation in the refractive index of the sensing medium depends on the culture concentration and motility of Pseudomonas bacteria [4]. The fourth layer is the affinity layer. To detect Pseudomonas bacteria, we have considered affinity layers with three different values of refractive index, i.e., 1.5265 (nicotine), 1.49368 (toluene), and 1.4370 [poly (trifluoroethyl methacrylate)] [4]. The optimum thickness (daff) of the affinity layer has been considered 3 nm. The optimum thickness and refractive index of each layer are shown in Table 1 for the proposed structure.
Figure 1b shows the SPR biosensor without the barium titanate layer. All the parameters in this structure have the same values as in the proposed SPR biosensor with the barium titanate layer.
In this article, the angular modulation approach has been used for the study of the proposed structure. Here, we have used the Fresnel multilayer reflection theory and transfer matrix method to analyze the reflectivity of p− polarized incident light wave. To excite surface plasmon, propagation constants of p− polarized (TM wave) incident light (kin) and surface plasmon (ksp) should be equal. Mathematically [29]:
Where εpr is the dielectric permittivity of the prism, ω is the angular frequency, εm is the dielectric permittivity of metal, θin is the angle of the incident light, and εdis the dielectric permittivity of the dielectric layer.
Here, all N layers are arranged in a stack along the z-axis. For each layer, dielectric constant and thickness are εk and dk respectively. Tangential field of the first boundary is at z = 0 and the tangential field of the final boundary is at z = zN − 1. Mathematically [30]:
Where, P1 and PN − 1 are the tangential fields of the electric field at first layer boundary and Nth layer boundary respectively, V1 and VN − 1 are the tangential fields of the magnetic field at first layer boundary and Nth layer boundary respectively. For N-layer structure, characteristic matrix (M) can be given as:
With, qk = (εk − n12sin2θ1)1/2/εk and \( {\beta}_k=\frac{2{\uppi \mathrm{d}}_{\mathrm{k}}}{\uplambda}{\left({\varepsilon}_k-{{\mathrm{n}}_1}^2{\sin}^2{\uptheta}_1\right)}^{1/2} \), in which λ is the incident light wavelength and θ1 is the angle of the incident light. Matrix elements M11, M12, M21, and M22 can be obtained by applying transfer matrix method; the total reflection coefficient (rp) for TM wave (p− polarized light) can be given as:
And finally, reflectivity (R) for hybrid N-layer structure can be expressed by:
The performance of a sensor can be characterized mainly for sensitivity, quality parameter, and sensor accuracy. The sensitivity of the SPR biosensor can be specified for the angle, phase, wavelength, and polarization or intensity modulation [31, 32]. Angular sensitivity (Sθ) of the SPR-based sensor can be expressed in terms of resonance angle change (δθres) and refractive index change (δns). Mathematically [33]:
Here, angular sensitivity is expressed in degree per RIU for the angular modulation approach.
Quality parameter (Q) or figure of merit (FOM) for SPR-based sensors can be given in terms of sensitivity and FWHM as follows:
It is usually expressed in (RIU−1).
Another important performance parameter of a sensor is detection accuracy or signal to noise ratio (SNR). It can be expressed in terms of resonance angle change (δθres) and FWHM and can be written as:
FWHM can be obtained from the SPR curve where the spectral width is at 50% reflection intensity.
Result and Discussion
The proposed structure of SPR biosensor based on Ag-BaTiO3-graphene for Pseudomonas bacterial detection is shown in Fig. 1a. The performance analysis of the proposed structure is based on numerical simulation. The structure consists of optimum thicknesses of different layers as given in Table 1. Here, the thickness of each layer in the proposed structure has been optimized for the best performance of the sensor.
Initially, we have investigated the effect of the thickness of both silver and barium titanate layers for minimum reflectivity at a fixed wavelength of 633 nm. Figure 2a–d represent the reflection spectra for different thicknesses for Ag and BaTiO3 layers and the variation of reflectivity with thickness. In Fig. 2a, we have considered the 40 nm thickness of the Ag layer with 0 nm of BaTiO3 layer (without BaTiO3 layer), 3 nm of BaTiO3 layer, 5 nm of BaTiO3 layer, and 7 nm of BaTiO3 layer. Further, Fig. 2b shows the reflection intensity curve for 45 nm thickness of the Ag layer with 0 nm of BaTiO3 layer (without BaTiO3 layer), 3 nm of BaTiO3 layer, 5 nm of BaTiO3 layer, and 7 nm of BaTiO3 layer. Figure 2c gives the reflection intensity curve for 50 nm of the Ag layer with 0 nm of BaTiO3 layer (without BaTiO3 layer), 3 nm of BaTiO3 layer, 5 nm of BaTiO3 layer, and 7 nm of BaTiO3 layer while Fig. 2d shows the reflectivity curve for 55 nm of the Ag layer with 0 nm of BaTiO3 layer (without BaTiO3 layer), 3 nm of BaTiO3 layer, 5 nm of BaTiO3 layer, and 7 nm of BaTiO3 layer. In the proposed design while optimizing the Ag and BaTiO3 layers, the thickness of the graphene layer with sensing medium water was kept constant at 0.34 nm in each case. The value of the minimum reflectivity (Rmin) and resonance angle in each case are shown in Table 2. In Fig. 2c, the value of minimum reflectivity(Rmin) is 0.0003537, which is least among all the cases as shown in Table 2. Hence, the optimum values of thickness of the Ag layer and BaTiO3 layer are 50 nm and 5 nm respectively for the graphene layer of thickness 0.34 nm and sensing medium 1.33.
Figure 1b represents the structure of the SPR biosensor without the BaTiO3 layer. In Fig. 3a–c, the variation of resonance angle with the change in concentration of Pseudomonas bacteria for three different affinity layers is shown. In Fig. 3a, the plot between the refractive index of the sensing medium and resonance angle variation for [poly (trifluoroethyl methacrylate)] affinity layer is shown. Here, resonance angles shift from 67.99° to 71.69°, 69.19° to 73.19°, 70.49° to 74.79°, 71.79° to 76.49°, 73.19° to 78.49°, 76.39° to 84.09°, and 78.29° to 87.09° for refractive indexes 1.33, 1.34, 1.35, 1.36, 1.37, 1.39, and 1.40 respectively. Figure 3b represents the resonance angle variation with the refractive index change in the sensing medium for the toluene affinity layer. Here, resonance angle shifts have been observed from 68.19° to 71.89°, 69.39° to 73.39°, 70.59° to 74.99°, 71.99° to 76.79°, 73.39° to 78.89°, 76.69° to 84.69°, and 78.69° to 87.09° for refractive indexes 1.33, 1.34, 1.35, 1.36, 1.37, 1.39, and 1.40 respectively. While in Fig. 3c, the resonance angle shifts from 68.29° to 72.09°, 69.39° to 73.59°, 70.69° to 75.19°, 72.09° to 76.99°, 73.49° to 79.09°, 76.79° to 85.09°, and 78.79° to 86.79° have been observed for sensing medium having refractive indexes 1.33, 1.34, 1.35, 1.36, 1.37, 1.39, and 1.40 respectively for nicotine affinity layer. Hence, it is evident that the BaTiO3 layer has a significant effect on shifting resonance angle for different concentrations of Pseudomonas bacteria.
Figure 4a–c show the plots of reflection spectra for the proposed SPR biosensor and SPR biosensor without the BaTiO3 layer for three different affinity layers. Here, we have considered three refractive indexes 1.33, 1.37, and 1.40 of sensing medium.
In Fig. 4a, the reflection spectra for the affinity layer [poly (trifluoroethyl methacrylate)] are shown. Resonance dips are observed at 71.69°, 78.49°, and 87.09° for the proposed biosensor. The value of FWHM for the proposed SPR sensor has been obtained (2.17). From this observation, sensitivity, quality parameter, and detection accuracy of the proposed biosensor for affinity layer [poly (trifluoroethyl methacrylate)] are obtained as 220 degree/RIU, 101.38 RIU−1, and 7.09 respectively. For SPR biosensor without BaTiO3 layer, resonance dips are observed at 67.99°, 73.19°, and 78.29°. Sensitivity, quality parameter, and detection accuracy for SPR biosensor without BaTiO3 layer have been obtained 147.14 degree/RIU, 110.63 RIU−1, and 7.74 respectively.
In the second case, the reflection spectra for the toluene affinity layer are shown in Fig. 4b. For this affinity layer in the proposed SPR biosensor, FWHM is 2.22 and resonance dips are observed at 71.89°, 78.89°, and 86.89°. Sensitivity, quality parameter, and detection accuracy are obtained as 214.28 degree/RIU, 96.52 RIU−1, and 6.75 respectively. For SPR biosensor without BaTiO3 layer, resonance dips are observed at angles 68.19°, 73.39°, and 78.69°. Sensitivity, quality parameter, and detection accuracy for this structure have been calculated 150 degree/RIU, 110.29 RIU−1, and 7.72 respectively.
Further, in the last case, the affinity layer of nicotine has been considered in the proposed SPR biosensor structure. The plot of reflection spectra for this structure is shown in Fig. 4c. For this layer in the proposed SPR biosensor structure, the value of FWHM is 2.24 and reflection dips have been observed at angles 72.09°, 79.09°, and 86.79°. Sensitivity, quality parameter, and detection accuracy are obtained as 210 degree/RIU, 93.75 RIU−1, and 6.56 respectively. For SPR biosensor without BaTiO3 layer, resonance dips are observed at angles 68.29°, 73.49°, and 78.79°. Sensitivity, quality parameter, and detection accuracy for this structure was found 150 degree/RIU, 109.48 RIU−1, and 7.66 respectively. We have concluded that poly (trifluoroethyl methacrylate) affinity layer shall provide the maximum sensitivity while matching the requisite index variation showing the presence of such bacteria.
The performance parameters of the proposed sensor and the SPR sensor without the BaTiO3 layer have been compared and are given in Table 3. Furthermore, we have compared the performance parameters of the proposed sensor structure with other previously related work, which is shown in Table 4.
We have also investigated the performance of the proposed sensor with the increasing number of the graphene layer. For this, we have plotted the reflectivity curve for the increasing number of graphene layers. Figure 5 shows that when we increase the number of graphene layers for three different affinity layers, the minimum reflection intensity increases. It is also clear from the given plot that the minimum reflectivity is high without considering the graphene layer. Hence, monolayer of graphene can be the best choice for the absorption of Pseudomonas bacteria with affinity layer.
Meanwhile, to see the effect of thickness of the affinity layer on the performance of the sensor, we have also plotted the shift of resonance angle for different values of thickness of the affinity layer as shown in Fig. 6. It shows the maximum shift in resonance angle for 3 nm thickness of different affinity layers. The maximum resonance angle shift for [poly (trifluoroethyl methacrylate)] affinity layer, toluene affinity layer, and nicotine affinity layer are found to be at 15.40°, 15°, and 14.70° respectively. Hence, affinity layer of 3 nm is considered for the absorption of Pseudomonas bacteria with the help of the monolayer of graphene.
Therefore, our proposed SPR biosensor demonstrates enhanced performance in comparison with previously reported work summarized in Table 4.
Conclusion
Our work demonstrates the improved performance in terms of sensitivity, quality parameter, and detection accuracy with the proposed Ag-BaTiO3-graphene-affinity layer–based SPR biosensor. Here, the barium titanate layer, having low dielectric losses and high dielectric constant, has been placed between silver and graphene layers. It is found that graphene with barium titanate enhances the performance when compared with other sensors without the barium titanate layer. Maximum sensitivity, quality parameter, and detection accuracy for this proposed structure are obtained as 220 degree/RIU, 101.38 RIU−1, and 7.09 respectively for change in the refractive index of the sensing medium from n = 1.33 to 1.40. This design effectively finds its application in the detection of Pseudomonas bacteria and may be useful for sensing in a series of biological analytes.
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Acknowledgments
Authors are thankful for collaborative work among the members from ECE Department, MNIT Jaipur (India), the Laser Centre, IBNU SINA ISIR, Universiti Teknologi Malaysia, Johor Bahru campus (Malaysia), and the faculty of Applied Sciences, Ton Duc Thang University, Ho Chi Minh City (Vietnam).
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Mudgal, N., Yupapin, P., Ali, J. et al. BaTiO3-Graphene-Affinity Layer–Based Surface Plasmon Resonance (SPR) Biosensor for Pseudomonas Bacterial Detection. Plasmonics 15, 1221–1229 (2020). https://doi.org/10.1007/s11468-020-01146-2
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DOI: https://doi.org/10.1007/s11468-020-01146-2