Abstract
Copper nanomaterials based on DNA scaffold (DNA-Cu NMs) are becoming a novel fluorescent material, but it is still challenging to obtain highly fluorescent DNA-Cu NMs with excellent stability. In this work, we report a kind of copper nano-assemblies (Cu NASs) with aggregation-induced emission enhancement (AIEE) property using DNA dendrimers with sticky end as template. The sticky end of the DNA dendrimers induced the formation of much bigger Cu NASs with average size ranging from 131 to 264 nm, depending on the length of the DNA dendrimer sticky end from 6 bases to 27 bases. Compared with complete complementary DNA dendrimer, nearly 6-fold fluorescence enhancement was achieved using DNA dendrimer with 27 bases sticky end. Moreover, the DNA dendrimer-Cu NASs demonstrated excellent stability in serum and could be rapidly quenched by Pb2+ ions. Based on the above property, highly sensitive and selective fluorescent detection of Pb2+ ions was possible with a linear range of 2.0–100 nM and a detection limit of 0.75 nM. Due to the sensitive and rapid response to Pb2+ as well as excellent stability in complex matrix, the proposed fluorescent Cu NASs demonstrated high potential as an excellent fluorescent probe for Pb2+ in complex matrix.
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Introduction
Fluorescent metal nanomaterials (NMs), including metal nanoparticles (Cu NPs) and metal nanoclusters (Cu NCs), have attracted much attention and have been widely used in molecular recognition and other biomedical studies owing to their low toxicity, ultrasmall size, and tunable fluorescent properties [1, 2]. However, the quantum yields (QYs) of water-dispersible fluorescent NMs are normally lower than those well-established inorganic quantum dots [3, 4]. The shortcoming greatly limits their optical applications.
More recently, aggregation-induced emission enhancement (AIEE) phenomenon has been observed in many metal NMs [5], which is similar as the organic chromophore [6]. Some AIEE NMs have been prepared via structure-induced lipophilic self-assembly [7], ion or solvent-induced self-assembly [8], and peptide-induced aggregation self-assembly [9]. Based on the AIEE property, some gold (Au), silver (Ag), and copper (Cu) NMs have been successfully applied in environmental [10] and biochemical analyses [11]. Among these noble metallic NMs, Cu NMs is relatively earth-abundant and cost-effective. Many templates, such as polymers, peptides and proteins, small molecules, and DNA [12], can be used to synthesize Cu NMs. DNA scaffold–templated Cu NMs (DNA-Cu NMs) have also raised much concern in terms of their molecular recognition and have been used in biomedical applications [13, 14]. Nevertheless, most fluorescent DNA-Cu NMs could keep stable for only a few hours [15]; it is still highly challenging to prepare highly fluorescent Cu NMs with excellent stability in complex matrix. Since single- and double-stranded DNA can be easily degraded in biological matrix, the damage of DNA templates will decrease the stability of these DNA-Cu NMs and the application repeatability [16]. Thus, the preparation of fluorescent DNA-Cu NMs with high stability is very important for their applications in sensing method against analytes in complex matrix.
DNA strands have been successfully used to assist various nanomaterials’ self-assembly due to the programmable synthesis, spatial addressability, and powerful molecular recognition [17]. But up to now, very limited study on AIEE Cu NMs has been reported using DNA scaffold as template. Lately, DNA nanoribbons, containing multiple specific binding sites, served as a template for successful synthesis and assembly of ultrasmall Cu NMs [18]. Dendritic DNA nanostructures demonstrated highly potential applications in biomedicine and biotechnology on the basis of their monodispersity, excellent stability, and highly branched structures [19]. DNA dendrimer as template might also enhance fluorescence emission and stability of Cu NMs [18].
Herein, highly fluorescent Cu nano-assemblies (Cu NASs) were prepared using DNA dendrimers with sticky end as template for the first time. The sticky end of the DNA dendrimers was found to significantly affect the size, fluorescent intensity, and stability of the Cu NASs. Mono-dispersed over 100 nm Cu NASs could be obtained through self-assembly of Cu NCs initiated by the sticky end of the DNA dendrimers as illustrated in Fig. 1. The Cu NASs demonstrated not only significant AIEE property, but also excellent stability in biological matrix. Moreover, the above fluorescent Cu NASs can be used as an excellent fluorescent probe for lead ions (Pb2+) in biological matrix.
Experimental
Materials and instruments
All of the oligonucleotide acids were synthesized by Shanghai Sangon Biotechnology Co., Ltd. (Shanghai, China, https://www.sangon.com/), and their sequences are shown in Table S1. Rhodamine 6G was purchased from Aladdin Reagent Company (Shanghai, China, https://www.aladdin-e.com/). Fetal bovine serum (FBS) was obtained from Fisher Scientific Ltd. (Beijing, China, http://www.wissen-bio.com), and 3-(N-morpholino) propanesulfonic acid (MOPS), ascorbic acid (AA), NaAc, sodium hydroxide (NaOH), Cu(Ac)2, Pb(Ac)2, MgCl2, and other used metal salts were purchased from Sinopharm Chemical Reagent Co., Ltd. (Shanghai, China, https://www.sinoreagent.com/). All of other chemicals were analytical grade. The water used in all experiments was ultrapure water.
Transmission electron microscopy (TEM) images were obtained on a JEOL JEM-2100 transmission electron microscope (Hitachi, Japan) with a working voltage of 200 kV. UV-vis absorption spectroscopic measurements were carried out using a microplate reader (Elx800, BioTek Instruments, USA). Dynamic light scattering (DLS) analyses were carried out on a NanoBrook Omni apparatus (Brookhaven Instruments, USA). All fluorescence measurements were performed using a fluorescence spectrophotometer F97Pro (Shanghai Lengguang Technology, China) with quartz cuvette. The excitation wavelength was fixed at 340 nm with both excitation and emission bandwidths set at 5.0 nm. X-ray photoelectron (XPS) measurements were made on an Escalab 250Xi spectrometer (Thermo Scientific, USA). The fluorescent quantum yield (QY) of the Cu NASs was measured by a reference method using Rhodamine 6G as reference fluorescent dye (QY=95%). Fluorescence lifetime measurements were measured using a FLS980 fluorescence spectrometer (Edinburgh Instruments, UK). Transmission electron microscope (TEM) and high-angle annular dark-field scanning transmission electron microscopy (HAADF-STEM) images, selective area electron diffraction (SAED) pattern, and energy-dispersive X-ray spectroscopy (EDS) elemental mapping of nanoparticles were obtained on a Tecnai G20 microscope (FEI, USA).
Preparations of Cu NASs
Fluorescent Cu NASs were synthesized according to the reported method with slight modification [19, 20]. DNA dendrimers were prepared using building blocks of Y-shaped junction scaffolds (Y-DNA). Three oligonucleotide strands (Y0a, Y0b, Y0c; see Table S1 in Supporting Information) were equally mixed in MOPS buffer (10 mM, pH 7.5, 150 mM NaAc, 1 mM MgCl2). The mixed solution was heated to 90°C and slowly cooled down to 4°C. The annealed sample was incubated for an additional 30 min at room temperature to obtain a Y-shaped DNA building block (Y0). Another Y-shaped DNA building block (Y1) was also prepared with three different oligonucleotides strands through similar steps. Y1 also have three duplex arms with 13 bases pairs with or without single-stranded sticky end. Y0 and Y1 with sticky end (X bases) were named as Y0-SteX and Y1-SteX (Fig. S1). Y0 and Y1 can hybrid through their complementary sticky ends in a ratio of 1 to 3 and then the DNA dendrimers (named as G1) were obtained. For the sake of description, Y0-SteX also was named as G0-SteX.
Then, the DNA dendrimer (G1, 500 μL, 500 nM) was mixed with AA dissolved in MOPS buffer (500 μL, 1.25 mM), followed by the immediate addition of Cu(Ac)2 dissolved in ultrapure water (200 μL, 500 μM). The above solutions were mixed well for 20 min to complete the self-assembly from Cu NC to G1-Ste13 Cu NASs. The effect of the buffer pH and Cu2+ concentration was also investigated. The obtained nanomaterials were stored in the dark at 4 °C for the next experiments.
Fluorescence detection of Pb2+ ions
In a typical detection, 980 μL of 62.5 nM (G1) Cu NASs was incubated with 20 μL Pb2+ ions in MOPS buffer (10 mM, pH 7.5, 150 mM NaAc, 1 mM MgCl2) for 20 min. After incubation, the fluorescence spectra of the Cu NASs system were scanned by a fluorescence spectrometer under 340-nm excitation.
The selectivity toward other common metal ions was tested. First, 980 μL of Cu NASs was mixed with 20 μL of various metal ions (Al3+, Ba2+, Fe3+, Ca2+, Cd2+, Hg2+, Cu2+, Ni3+, Co2+, Mg2+, Mn2+, Zn2+, Pb2+), respectively. After being incubated for 20 min, the fluorescence quenching was analyzed. All of the measurements were performed three times, and the standard deviation was plotted as an error bar. In the stability analysis, 100 uL Cu NASs or dsDNA-Cu NCs (500 nM) was added to 700 uL FBS to observe the fluorescence change.
Detection of Pb2+ in real samples
In order to investigate the practical application of the fluorescent probe in real samples, FBS were spiked with various concentrations of Pb2+ (0.1, 0.4, and 1.6 mM) and tested by the above method. After the addition of Pb2+, the FBS samples were centrifuged at 10,000 rpm for 20 min. The obtained serum supernatants were diluted with MOPS buffer (10 mM, pH 7.5) by 20-fold and then incubated with the Cu NASs for 20 min. Finally, the fluorescence emission was measured. The calculation of recovery was according to the standard curve and equation: Recovery (%) = detected Pb2+ concentration/spiked Pb2+ concentration. The detected Pb2+ concentration was calculated according to the corresponding fluorescent signal and the standard curve.
Results and discussion
Characterization of Cu NASs
The effect of buffer pH and Cu2+ concentration on the Cu NASs preparation was investigated. As shown in Fig. S2, the brightest signal of fluorescent Cu NASs was obtained at pH 7.5 and 500 μM Cu2+. Since the size of DNA templates could play a key role in the Cu NMs preparation [15], DNA dendrimers (G0-Ste13 and G1-Ste13) were compared firstly. As shown in Fig. S3, G1-Ste13-Cu NMs demonstrated hyperchromic shift at 340 nm in the UV-vis spectra and 1.6-fold fluorescent enhancement compared with G0-Ste13-Cu NMs. Then, the length of sticky end in the G1 was investigated carefully. As shown in Fig. 2a, the UV-vis absorption of the DNA dendrimer G1 templated Cu NMs showed hyperchromic shift at 340 nm with the increasing length of the G1 sticky end from 0 to 27 bases. These results indicated that the size of DNA dendrimer–templated Cu NMs increased with the increasing size of DNA dendrimer templates since increased nanoparticles would result in background scattering [21, 22]. These Cu NMs exhibited red fluorescence under UV light while colorless under visible light (Fig. 2b). The excitation and emission peaks of Cu NASs were located at 340 nm and 590 nm (Fig. S3), which were similar to the previous results [20]. Interestingly, the fluorescent intensity of the Cu NMs increased gradually with the increasing length of the sticky end of G1 from 0 to 27 bases and nearly 6-fold enhancement was achieved (Fig. 2b).
The TEM images demonstrated that the much-packed morphology and ordered arrangement appeared in the Cu NASs as the prolonged sticky end of G1 was introduced (Fig. 3). In general, the sizes of the Cu NASs were much bigger than that of the dendrimer DNA template (Fig. S4). The average size of G1-Ste0-Cu NCs was 19 nm. As the base number of G1 sticky ends increased to 6, 13, 20, and 27, the average size of the Cu NASs increased from 19 to 131 nm, 160 nm, 220 nm, and 264 nm, respectively (Fig. S4a ), while the size of templates was estimated to be about 18 nm, 21 nm, 21 nm, 23 nm, and 25 nm, respectively (Fig. S4b). These results indicated that the formation of these Cu NASs consisted of two processes: dendrimer DNA–templated Cu NCs growth and single DNA strand–driven self-assembly of DNA-Cu NCs (Fig. 1). The previous work revealed that the Cu NCs were accumulated in the major groove of the dsDNA [20]. Due to the rigid structure of dsDNA, dsDNA template cannot fully coat the surface in dsDNA-templated Cu NCs preparation. But the sticky end of the dendrimer DNA template in the Cu NCs could be absorbed easily onto the surface of Cu NCs, which may be the main driving force in the self-assembly of DNA-Cu NCs [23]. It can also be observed that when there was the same number of bases in the DNA template, the degree of self-assembly of G0-Ste13-Cu NASs (template with 3 sticky ends) was weaker than that of G1-Ste13-Cu NASs (template with 6 sticky ends), and its smaller particle size and looser spherical density indicate the influence of sticky ends on self-assembly, but its particle size was still larger than G0-Ste13 (Fig. 3f and Fig. S4)
HAADF-STEM image and corresponding elemental mappings showed that Cu, C, N, and P elements were densely and uniformly distributed in the G1-Ste13-Cu NASs, which was consistent with the morphology of the G1-Ste13-NASs (Fig. 4a, Fig. 4b, and Fig. 4c). The lattice fringes with 0.208-nm lattice space ascribed to (111) planes of Cu can be clearly observed in the HRTEM image (Fig. 4d) [24]. Furthermore, SAED pattern of the hydrangea nanostructure exhibited polycrystalline diffraction rings (Fig. 4e), which revealed that the G1-Ste13-Cu NASs was polycrystalline structures [25].
To better understand the mechanism of fluorescence enhancement of the Cu NASs, we conducted fluorescence lifetime measurement for G1-Ste0-Cu NASs and G1-Ste13-Cu NASs. The fluorescence lifetime of G1-Ste0-Cu NASs was 9.2 ns (calculated from two individual lifetimes of 0.63 ns (0.02%) and 9.27 ns (99.98%)). After increasing the length of sticky end in the G1, the average lifetime of G1-Ste13-Cu NASs was increased to 14 ns (Fig. S5, Table S2). Combining with the compact morphology and the long fluorescence lifetime, the fluorescence intensity increase after Cu NCs self-assembly should relate to the suppression of intramolecular vibration and rotation of surface ligands on the Cu NCs, leading to decreased nonradiation and increased fluorescence emission [4, 26, 27]. The dependency of the fluorescence intensity on the size and morphology of Cu NASs confirmed that strong AIEE effect existed in the fluorescent Cu NASs. And the phenomenon of AIEE for Cu NCs has been recently reported [5, 28].
Using Rhodamine 6G as reference, the quantum yields (QY) of Cu NASs were measured [29, 30]. As the sticky end of G1 increased from 0 to 27, the QY of G1-Cu NCs and G1-Cu NASs increased from 4 to 17% (Table S3). These results demonstrated that the QY of dendrimer DNA-Cu NASs could be well-controlled by tailoring the sticky end of dendrimer DNA template.
The dendrimer DNA-Cu NASs and dsDNA-Cu NCs were incubated in serum for days and then fluorescence changes were measured. The results showed that the fluorescence intensity of the G1-Ste13-Cu NASs barely changed after being stored with serum for 6 days. However, the dsDNA-templated Cu NCs only kept stable for 4 h and only 24% fluorescence intensity was preserved after 1 day (Fig. S6). This was due to that reticular DNA structure finally formed in the dendrimer DNA–templated Cu NASs and this kind of DNA structure was much more resistant to nuclease degradation than common DNA structure [19, 31].
Analytical performance of Pb2+ sensing
Pb2+ is one of hazardous heavy metal ion, seriously threatening the environment and human health due to their long-term accumulation in the human body [32]. Zeng and co-workers developed the detection of Pb2+ with high selectivity and sensitivity using DNA-templated copper NCs as fluorescence probe in aqueous solution [20]. Despite their excellent results, to the best of our knowledge, no work on Cu NASs with AIEE property as fluorescent probe for Pb2+ detection was reported so far.
To achieve sensitive detection for Pb2+ ions, dendrimer DNA-Cu NASs with sticky end of various lengths were compared. The G1-Ste13-Cu NASs with 13 bases of sticky end were found to be the most sensitive probe to Pb2+ detection (Fig. S7a). This was mainly due to that the fluorescence emission will be enhanced when the sticky end of the Cu NASs was prolonged. However, when the sticky end was too long, the structure of the Cu NASs became denser. The denser structure will hinder the combination of Pb2+ and Cu NASs to some extent.
The dilution of the G1-Ste13-Cu NASs was investigated and the results showed that 8-fold dilution of the G1-Ste13-Cu NASs was most sensitive to Pb2+ ions (Fig. S7b). Moreover, the G1-Ste13-Cu NASs could be quenched rapidly by Pb2+ ions. Obvious fluorescence change could be detected in 5 min and highest fluorescent respond reached after 20 min (Fig. S8).
Fluorescence titration experiments were monitored for the Cu NASs with gradually increasing the concentration of Pb2+ ions. As shown in Fig. 5a and b, the fluorescence intensity of G1-Ste13-Cu NASs gradually decreased with increasing Pb2+ concentration and levelled off at 100–600 nM Pb2+. As depicted in Fig. 5b, a linear response between the fluorescence intensity of G1-Ste13-Cu NASs and Pb2+ concentration was observed over the range of 2.0–100 nM, and the corresponding linear equation was F = 921.7–5.3028 C with a correlation coefficient of R2 = 0.9952. The limit of detection (LOD), calculated following the signal-to-noise ratio of 3:1 (the IUPAC criteria), was estimated to be 0.75 nM. The limit of detection (LOD) is remarkably lower than the maximum recommended Pb2+ concentration (72 nM) by the US Environmental Protection Agency (EPA) [33] in drinking water
The responses of G1-Ste13-Cu NASs to various heavy metal ions were tested. It was found that the fluorescent G1-Ste13-Cu NASs was significantly quenched by 0.3 μM Pb2+, while the respond to the other metal ions even at 3 μM was negligible (Fig. S9). These results demonstrated the high potential of the G1-Ste13-Cu NASs as a highly sensitive and selective probe for Pb2+. Pb2+ ions can react with Cu+ through strong 5d10(Pb2+)-3d10(Cu+) metalophilic interactions, which lead to the deposition of Pb atoms/ions on G1-Ste13-Cu NASs. The selectivity of sensing Pb2+ ions was mainly due to the two reasons: (1) this kind of metalophilic interaction did not exist between some common metal ions and Cu+ ion; (2) only when this kind of metalophilic interaction was strong enough, dissociation of single-stranded nucleic acid from G1-Ste13-Cu NCs happened. Among the fluorescent metal NC-based detections of Pb2+, the proposed Cu NAS-based fluorescent method was the most sensitive. Compared with some typical fluorescent detection methods (Table S4), the sensitivity of the proposed Cu NAS-based fluorescent method was comparable. Although the sensitivity of our Cu NAS-based method was lower than the methods integrating signal amplification strategies [34], it was much simple and rapid. In addition, the DNA dendrimer–templated Cu NASs have the potential to be applied in cell image since DNA dendrimer possesses good fluorescence stability.
Mechanism of Pb2+ sensing
Due to the reduction of AA, rich Cu+ species would exist on the surface of dendrimer DNA-Cu NASs. As shown in Fig. 6a and b, the XPS peaks at 932.3 eV and 951.9 eV were assigned to 2p3/2 and 2p1/2 features of Cu(0) or Cu(I), which were similar with the results in the previous works on the preparation of dsDNA-templated Cu NCs [20, 35, 36]. Pb2+ ions could react with Cu+ via strong 5d10(Pb2+)-3d10(Cu+) metallophilic interaction, and this aurophilic interaction causes Pb atoms/ions to become deposited on the particle [37], which was considered as the main mechanism of the fluorescence quenching of dsDNA-templated Cu NCs by Pb2+ ions [38, 39]. The similar surface chemical state of the dendrimer DNA-Cu NASs with dsDNA-templated Cu NCs indicated that the above mechanism also existed in the dendrimer DNA-Cu NASs.
Moreover, the G1-Ste13-Cu NASs could be transformed into much smaller and monodisperse Cu NCs after incubated with 200 nM Pb2+ ions (Fig. 7a). The average size was 22 nm by DLS measurement (Fig. 7c), which was close to the size of G1-Ste0-Cu NASs (19 nm). In order to investigate the reason why the particle size of G1-Ste13-Cu NASs becomes similar to that of G0-Ste13-Cu NASs after adding Pb2+ to the system, a ssDNA (3 μM) complementary with the single-stranded end of the template G1-Ste13 was mixed with the G1-Ste13-Cu NASs. The obtained G1-Ste13-Cu NASs became much smaller with the average size of 26 nm by DLS measurement (Fig. 7b and Fig. 7c), which is similar to the particle size of G1-Ste13-Cu NASs after incubated with Pb2+. And the fluorescence obviously decreased after the ssDNA was added (Fig. 7d). The ssDNA can be complementary to the end strand of the nucleic acid template of G1-Ste13-Cu NASs, destroying the van der Waals forces between the ssDNA and the G1-Ste13-Cu NCs [23].
The above disassembly of G1-Ste13-Cu NASs induced by ssDNA hybridization further confirmed that the sticky end of DNA template played a vital role in the assembly of the above DNA-Cu NMs and fluorescent sensing of Pb2+ ions. The above mechanism is shown in Fig. 1.
Real sample analysis
To test the practicality of the sensing systems in complex samples, the Cu NASs were further applied to detect Pb2+ ions in FBS, a complex biological matrix. Before the Pb2+ detection, the blank of the FBS was first detected, and no Pb2+ was detected. The FBS sample was spiked with 5.0, 20, and 80 nM of Pb2+ and then analyzed by using G1-Ste13-Cu NASs as the probe. The detection results are listed in Table 1. The recovery range of 91.1–96.5% with relative standard deviation (RSD) values less than 4.0% was achieved, demonstrating good accuracy and precision of this method. According to the US Environmental Protection Agency (USEPA), the maximum acceptable concentration for lead in blood is 480 nM [40]. We added 100 nM and 400 nM Pb2+ (both less than 480 nM) to serum, which can be detected with recoveries higher than 92%. Thus, these results proved that the probe can meet the need of actual sample detection. The background fluorescence in the serum will limit the application of nanocluster probes to some extent. However, appropriate dilution of serum could overcome this limitation
Conclusions
In this study, highly fluorescent Cu NASs were prepared using DNA dendrimers with sticky end as template for the first time. The sticky end of the DNA dendrimers could significantly affect the size, fluorescent intensity, and stability of the Cu NASs. The fluorescent enhancement of the Cu NASs was ascribed to AIEE effect derived from the self-assembly of the DNA dendrimers-Cu NCs. Due to the sensitive and rapid respond to Pb2+ as well as excellent stability in biological matrix, the proposed fluorescent Cu NASs demonstrated highly applicable potential as an excellent fluorescent probe for Pb2+ in complex samples. In addition, considering the high stability of the DNA dendrimer Cu NASs, they also were expected to be further used in various labelling analysis including fluorescent-labelled immunoassay, aptamer biosensor and cell image, etc.
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Acknowledgements
The authors would like to thank Professor Xiao-Fang Shen of Jiangnan University for his valuable comments and advice in the preparation this paper. The work was supported by the National Natural Science Foundation of China (31871879), the National Key Research and Development Program (2018YFC1604400), and the National Key Research and Development Program (2019YFC1605405).
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Li, M., Cai, YN., Peng, CF. et al. DNA dendrimer–templated copper nanoparticles: self-assembly, aggregation-induced emission enhancement and sensing of lead ions. Microchim Acta 188, 346 (2021). https://doi.org/10.1007/s00604-021-04967-y
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DOI: https://doi.org/10.1007/s00604-021-04967-y