Abstract
Outer membrane vesicles (OMVs) produced by Gram-negative bacteria have been intensively investigated in recent times. Vesicle formation models have been proposed, some factors affecting the process were established, and important roles vesicles play in vital activities of their producing cells were determined. Studies of pathogenic bacterial vesicles contribute to understanding the causes of acute infection and developing drugs on their basis. Despite intensive research, issues associated with the understanding of vesicle biogenesis, the mechanisms of bacterium–bacterium and pathogen–host interactions with participation of vesicles, still remain unresolved. This review discusses some results obtained in the research into OMVs of Lysobacter sp. XL1 VKM B-1576. This bacterium secretes into the environment a spectrum of bacteriolytic enzymes that hydrolyze peptidoglycan of competing bacteria, thus leading to their lysis. One of these enzymes, lytic endopeptidase L5, has been shown not only to be secreted by means of vesicles but also to be involved in their formation. As part of vesicles, the antimicrobial potential of L5 enzyme has been found to be considerably expanded. Vesicles have been shown to have a therapeutic effect in respect of anthrax infection and staphylococcal sepsis modelled in mice. The scientific basis for constructing liposomal antimicrobial preparations from vesicle phospholipids and recombinant bacteriolytic enzyme L5 has been formed.
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Introduction
Formation of OMVs is a widespread process among Gram-negative bacteria (Kadurugamuwa and Beveridge 1997; Beveridge 1999; Kuehn and Kesty 2005; Balsalobre et al. 2006; Vasilyeva et al. 2008, 2009; Olofsson et al. 2010; Moon et al. 2012). Vesicles are represented by spherical structures 20–300 nm in size. The first publication on vesicles dealt with their formation in Vibrio cholerae by splitting off the outer membrane of the bacterium (Chatterjee and Das 1967). In 1989, after a research into their structure, they began to be called outer membrane vesicles (Mayrand and Grenier 1989). Apart from outer membrane components (proteins, lipopolysaccharide, phospholipids), vesicles comprise components of the periplasm (periplasmic proteins, including autolytic enzymes; cell wall fragments) and, in pathogenic bacteria, virulence factors (Kadurugamuwa and Beveridge 1995; Horstman and Kuehn 2000; Kato et al. 2002; Lee et al. 2008; Olofsson et al. 2010; Roier et al. 2015). An increasing number of recent works indicate that vesicles include components of the cytoplasm (including DNA and RNA) and cytoplasmic membrane (Lee et al. 2008; Olofsson et al. 2010; Pérez-Cruz et al. 2013; Zielke et al. 2014; Pérez-Cruz et al. 2015). Their small size and specific composition enable vesicles to perform important functions in bacterial vital activities: secretion of proteins, utilization of toxic metabolites, acquisition of nutrients, and expansion of the ecological niche (Li et al. 1996, 1998; Kadurugamuwa and Beveridge 1997; Kobayashi et al. 2000; Kuehn and Kesty 2005; Haurat et al. 2011; Evans et al. 2012; Vasilyeva et al. 2014; Olsen and Amano 2015; Xie 2015; Wang et al. 2015). Comprehension of the importance of vesicular studies by the scientific community contributed to the intensive development of two trends in their research, the studies of the formation mechanism (biogenesis) and of the functional significance. The trends were founded by American scientists Jagath L. Kadurugamuwa and Terry J. Beveridge. The more information started to appear about vesicles, about their structure, performed functions and biogenesis, the more questions began to emerge about how they form, which factors are involved in their formation, how vesicles perform their functions. We will try to partially answer these questions, as exemplified by one bacterium, Lysobacter sp. XL1.
The genus Lysobacter belongs to the family Xanthomonadaceae and was first described in 1978 (Christensen and Cook 1978). Initially, the genus included four species: Lysobacter antibioticus, Lysobacter brunescent, Lysobacter enzymogenes, and Lysobacter gummosus (de Bruijn et al. 2015). To date, approximately 25 species have been described. The genus owes its name to a high lytic activity manifested by its representatives with respect to Gram-positive and Gram-negative bacteria, fungi, nematodes, and unicellular algae (Christensen and Cook 1978). A broad spectrum of Lysobacter spp. lytic action is due to production of a range of biologically active compounds: extracellular enzymes (proteases, peptidoglycan hydrolases, glucanases, lipases, chitinases), short peptides (e.g., cyclo(L-Pro-L-Tyr)), antibiotics (cyclodepsipeptides, cyclic lipodepsipeptides, etc.) (Bone et al. 1989; Kato et al. 1998; Ahmed et al. 2003; Palumbo et al. 2003, 2005; Ogura et al. 2006; Ko et al. 2009; Xie et al. 2012; Cimmino et al. 2014; Pidot et al. 2014; Puopolo et al. 2014). Lysobacter spp. are Gram-negative rodlike bacteria (Reichenbach 2006). Their representatives inhabit soils and freshwater reservoirs (Christensen and Cook 1978; Reichenbach 2006; de Bruijn et al. 2015). Lysobacter spp. are anaerobic organisms, though they can survive at low (10 %) concentrations of oxygen; optimum pH varies from 7 up to 9; the temperature optimum, in the range of 30 °C, though it varies depending on the species (Reichenbach 2006). Before our research, nothing was known about the ability of Lysobacter representatives to form vesicles.
Our laboratory investigates the bacterium Lysobacter sp. XL1. This bacterium was isolated from waters of the Oka River near Pushchino. The bacterium produces a complex of bacteriolytic enzymes L1–L5, based on which an efficient antimicrobial drug, lysoamidase, was developed (Kulaev et al. 2006). Lysoamidase is efficient against Gram-positive pathogenic bacteria multiply resistant to antimicrobial preparations and is permitted for external use. Bacteriolytic enzymes, constituents of the preparation, exhibit various substrate specificities with respect to peptidoglycan of pathogenic bacteria. Enzymes L1, L4, and L5 are endopeptidases and break the peptide bond of the peptide subunit in the interpeptide bridge of peptidoglycan; L1 and L2 are amidases and destroy the bond between the first amino acid of the peptide subunit and N-acetylglucosamine; L3 is muramidase that cleaves the bond between N-acetylglucosamine and N-acetylmuramic acid (Stepnaya et al. 1996, 2005; Begunova et al. 2003; Vasilyeva et al. 2014). Each lysoamidase protein is a potential base for developing new-generation antimicrobial drugs for internal use, which could be used for treatment of infections caused by strains resistant to antibiotics. For this reason, our interest in research into the topogenesis of these proteins is evident. Thus, studies of the secretion of L5 from cells of Lysobacter sp. XL1 into the environment found this bacterium to be capable of forming vesicles (Vasilyeva et al. 2008). The secretion proved to be performed by means of these vesicles. The antimicrobial action spectrum of protein L5 within vesicles was also found to be significantly broader than that of its soluble form (Vasilyeva et al. 2014). Those results contributed to the development of three trends of research: studies of vesicle biogenesis, investigation of the antimicrobial potential and curative action of vesicles, and construction of liposomal antimicrobial preparations based on particular lysoamidase lytic enzymes and phospholipids of Lysobacter sp. XL1 vesicles. This will be discussed in the review.
Vesicle biogenesis of Gram-negative bacteria
The vesicle formation mechanism (biogenesis) is at present the most debatable topic of investigations in this field. All accumulated information about this process was reduced by Mashburn-Warren and Whiteley (2006) to three models describing the vesicle formation; the models were then supplemented by other investigators (Kulp and Kuehn 2010; Schwechheimer et al. 2013, 2014; Schwechheimer and Kuehn 2015). The first model combines the data that the biogenesis of vesicles occurs in sites of a temporary rupture of bonds between the inner leaflet of the outer membrane and peptidoglycan (e.g., the breakdown of the lipoprotein–peptidoglycan bond) (Hoekstra et al. 1976; Wensink and Witholt 1981; Schwechheimer et al. 2013; Schwechheimer et al. 2014). The second model is based on the results supporting the formation of vesicles in sites of periplasmic components’ pressure on the inner side of the outer membrane (these can be peptidoglycan fragments and misfolded proteins) (Zhou et al. 1998; Hayashi et al. 2002; McBroom and Kuehn 2007; Tashiro et al. 2009). The basis of the third model are the data on the involvement of cell envelope components, that form sites of outer membrane destabilization due to their biochemical structure, in the vesicle formation process (e.g., B-type lipopolysaccharide, Pseudomonas quinolone signal (PQS) molecules) (Kadurugamuwa and Beveridge 1995; Sabra et al. 2003; Mashburn-Warren and Whiteley 2006; Schertzer and Whiteley 2012).
Thus, formation of vesicles is performed by one mechanism, through bulging and pinching off of the outer membrane. The factors that determine the process can be different but all of them are either components of the cell envelope or are functionally coupled with it (e.g., periplasmic proteins). As the result of the effect of these factors, there occurs a locus disturbance of outer membrane rigidity, which is accompanied by the formation of vesicles. However, it is not to be ruled out that the process is affected by both several factors simultaneously and each of them separately, which can lead to the formation of heterogeneous vesicles within one cell. Heterogeneous vesicles have already been found to be formed by Aggregatibacter actinomycetemcomitans, E. coli, Helicobacter pylori (Balsalobre et al. 2006; Olofsson et al. 2010; Rompikuntal et al. 2012). Formation of these vesicles by one bacterial taxon can be determined by specific features of their biogenesis, in particular, by the action of several factors on the bacterial outer membrane. Our research has in part been aimed to confirm this.
Vesicle biogenesis of Lysobacter sp. XL1
The ability of cells of Lysobacter sp. XL1 to form vesicles was established in studies of extracellular bacteriolytic enzymes it secretes. The bacteriolytic enzymes of this bacterium efficiently hydrolyze peptidoglycan, the main structural component of cell walls in competitive bacteria. One of the most investigated enzymes is lytic protease L5, which is 56 % homologous to α-lytic protease of Lysobacter enzymogenes (Granovsky et al. 2010, 2011; Lapteva et al. 2012). Proceeding from the homology to α-lytic protease (Silen et al. 1989; Fujishige et al. 1992), it could have been assumed that, being synthesized as prepro proteins, L5 are secreted into the environment in two stages: first via the cytoplasmic membrane into the periplasm, which is accompanied with the processing of the pre moiety, and then via the outer membrane, presumably, by means of a type II secretory mechanism, which is accompanied with the splitting-off of the pro moiety and the appearance of mature protein in the extracellular medium. However, L5 was found to be secreted into the environment by means of OMVs, which proved to form cells of Lysobacter sp. XL1 (Fig. 1a) (Vasilyeva et al. 2008). Lysobacter sp. XL1 vesicles are 30 up to 160 nm in diameter and have a protein composition similar to, but not identical to, outer membranes (Vasilyeva et al. 2009). It was also found that vesicles of smaller, about 20 nm, but homogeneous size (Fig. 1b) form under conditions blocking the secretion of lytic enzymes. The totality of the data prompted several ideas: first, that vesicles of Lysobacter sp. XL1 are heterogeneous not only by size but also by composition and, possibly, by performed functions; and second, that one of the factors that determine the vesicle formation process can be secreted protein L5 itself.
To prove the heterogeneity, a preparation of Lysobacter sp. XL1 vesicles was fractionated in a sucrose density gradient (Kudryakova et al. 2015). Two subpopulations of vesicles were isolated: of a lighter fraction, 30–65 nm in diameter and containing protein L5; and of a heavier fraction, 65–100 nm in diameter, containing no protein L5 in their composition. A comparative electrophoregram of vesicular proteins in the fractions revealed an additional difference in their protein composition. Thus, it was established that Lysobacter sp. XL1 did form vesicles heterogeneous by size, density, and protein composition. The same experiments confirmed that protein L5 could play a role in the formation of special secretory vesicles. The role of protein L5 in vesicle biogenesis was also studied by the electron microscopic immunocytochemistry of ultrathin sections of Lysobacter sp. XL1 cells (Fig. 2). It is seen in the figure that in the process of the topogenesis protein L5 is translocated to the periplasmic space and concentrates in certain periplasm loci adjacent to the inner leaflet of the outer membrane; subsequently, vesicles are formed out of those loci. Probably, there is some affinity of protein L5 to the outer membrane that contributes to its concentration in certain loci; this leads to a pressure on it and a disturbance of rigidity. Additional confirmation of the involvement of L5 in vesicle biogenesis was obtained in studies of its secretion in recombinant strain P. fluorescens Q2–87/B (Vasilyeva et al. 2013). Recombinant protein L5 was found not only to be secreted by means of vesicles of strain Q2–87/B but also to affect the vesicle formation process. Using electron microscopy, strain Q2–87/B expressing recombinant protein L5 was found to form a greater number of vesicles of a more heterogeneous diameter as compared with vesicles of parent strain Q2–87.
On the whole, the involvement of Lysobacter sp. XL1 secreted protein L5 can be considered within the framework of the second model of vesicle biogenesis. However, in this case, the biogenesis proceeds with the participation of protein, which is functionally significant for the cell and makes use of vesicles as a transport means, not protein debris as described for this model. Besides, the totality of all the data indicates that protein L5 has some functional features that determine its ability to affect the vesicle formation process. Future research (including structure studies) will, possibly, clarify this issue. It is not to be ruled out that data on the involvement of secreted proteins in the vesicle biogenesis of Gram-negative bacteria will subsequently be accumulated, which would allow considering this process within the framework of a new model.
Thus, we have found that Lysobacter sp. XL1 forms heterogeneous vesicles. And one of the factors that determine this process is secreted protein L5. But the process may also involve other factors: phospholipids, lipopolysaccharide, and lipoprotein. Unlike the latter two, the involvement of phospholipids has not yet been attributed to any of the considered vesicle biogenesis models, because experimental data are still scarce. But phospholipids together with lipopolysaccharide are the main components of outer membranes. Namely, phospholipids determine the spherical shape of vesicles. It would be logical to assume their important role in the formation of these structures. To date, there are only some data on the role of phospholipids in vesicle formation. Thus, P. syringae Lz4W vesicles’ phospholipids were found to be enriched with unsaturated branched fatty acids (Chowdhury and Jagannadham 2013). An assumption was made that an increased membrane flexibility of segments enriched with phospholipids with these fatty acids might contribute to vesicle biogenesis. On the contrary, for P. aeruginosa vesicles it was shown that vesicle phospholipids consisted predominantly of elongated and saturated fatty acids, which was indicative of the vesicle formation exclusively from the more rigid segments of the outer membrane (Tashiro et al. 2011). We felt it topical to continue our research from establishing the participation of phospholipids in the biogenesis of Lysobacter sp. XL1 vesicles.
We carried out a comparative analysis of phospholipids of Lysobacter sp. XL1 outer membranes and vesicles by two-dimensional thin-layer chromatography (unpublished data) (Fig. 3). In the figure, it is seen that outer membranes contain a range of phospholipids: the major ones among them are cardiolipin, phosphatidylethanolamine, and unidentified phospholipid; phosphatidylglycerol, phosphatidylmonomethylethanolamine, and a group of unidentified phospholipids occur in minor amounts. In contrast, vesicles reveal a small diversity of phospholipids: the major phospholipid is cardiolipin, and phosphatidylglycerol and an unidentified phospholipid occur in minor amounts. Evidently, vesicles form predominantly out of outer membrane segments enriched with cardiolipin. As the hydrophilic head of cardiolipin carries two negative charges, the rigidity of the outer membrane can possibly be disturbed due to their intermolecular repulsion in segments enriched with this phospholipid. Thus, we established one more factor determining the formation of vesicles in Lysobacter sp. XL1.
Based on the literature data and our own results, we can supplement the model of Lysobacter sp. XL1 vesicle biogenesis published earlier (Kudryakova et al. 2015). We feel that the vesicle formation mechanism is the same for all Gram-negative bacteria: the outer membrane evaginates due to a disturbance of its rigidity, and the evagination is completed by the formation of a vesicle. But the factors that determine the process can be different. For Lysobacter sp. XL1, two such factors have been established: secreted protein L5 and acid phospholipid cardiolipin (Fig. 4). It is not to be ruled out that both factors act simultaneously. Subsequently, our plans are to establish the action of other factors, too, which will not only expand the views of this process in Lysobacter sp. XL1 but will also contribute to the understanding of vesicle biogenesis in Gram-negative bacteria on the whole.
Functional significance and applied prospects of vesicles
OMVs play an enormous role in bacterial cell activity. They have been the topic of numerous studies. To date, vesicles have been proven to be involved in protection of bacteria from stress factors (Kadurugamuwa and Beveridge 1995, 1996, 1997; Kobayashi et al. 2000). Vesicles mediate the formation of biofilms, including due to the co-aggregation with other bacteria, which also determines a better survivability of microorganisms in the environment (Kuehn and Kesty 2005; Olsen and Amano 2015; Xie 2015; Wang et al. 2015). It has been found that β-lactamase is secreted into the environment by means of vesicles, which enables protection of the bacterium from the group of β-lactam antibiotics, deeper layers of the biofilm including (Ciofu et al. 2000). Vesicles are a convenient means for exchanging advantageous material (plasmids, DNA fragments) between bacteria, which contributes to increasing their survivability (Yaron et al. 2000; Renelli et al. 2004; Biller et al. 2014). Vesicles of P. aeruginosa PAO1 contain autolysin lyzing other bacteria, which enables it to acquire nutrients and occupy a certain ecological niche (Li et al. 1996). Because of such an aggression with respect to competing bacteria, the authors called them predatory vesicles. Myxococcus xanthus vesicles, secreting alkaline phosphatase into the extracellular space, under starvation conditions also procure phosphates required to cells by predatory activities (Evans et al. 2012). Very intensive research is under way into vesicles produced by pathogenic bacteria; they are used to release virulence factors, which makes them dangerous participants of the pathogenesis (Kato et al. 2002; Kuehn and Kesty 2005; Mashburn-Warren et al. 2008; Amano et al. 2010; Ellis and Kuehn 2010; Tashiro et al. 2012; Kulkarni et al. 2014; Avila-Calderón et al. 2015; Olsen and Amano 2015; Xie 2015). To date, some mechanisms of how vesicles of pathogenic bacteria penetrate into host tissues have been established (Amano et al. 2010; Olofsson et al. 2014; Kaparakis-Liaskos and Ferrero 2015; Olsen and Amano 2015). It is evident that research into the significance of vesicles in both bacterium–bacterium and pathogen–host interactions is of enormous importance for microbial ecology and medicine.
Antimicrobial potential of Lysobacter sp. XL1 vesicles
An important part of our studies is the research into bacteriolytic enzymes of Lysobacter sp. XL1. The occurrence of bacteriolytic enzyme L5 in Lysobacter sp. XL1 vesicles, certainly, contributed to studies of their antimicrobial and therapeutic potential.
We used the spot test method to investigate the antimicrobial action of Lysobacter sp. XL1 vesicles as compared with homogeneous protein L5. First, we chose opportunistic pathogenic strains from the laboratory collection, including Gram-positive and Gram-negative bacteria, yeasts and mycelial fungi. The lytic effect was determined by the zones of lysis in spots where preparations were applied. The lytic action spectrum of protein L5 within vesicles proved to be significantly extended as compared with its homogeneous form (Table 1) (Vasilyeva et al. 2014). Gram-positive bacteria were lysed by vesicles more intensively than Gram-negative ones. This can be due to particular features of their cell envelope structure and, correspondingly, by the different mechanisms of vesicular action on them. Mechanisms of the lytic action of autolysin-containing vesicles have already been studied earlier (Kadurugamuwa and Beveridge 1996). By analogy with the proposed schemes, during the interaction with the surface of Gram-positive bacteria vesicles presumably open, and protein L5, due to its high concentration, rather intensively cleaves the peptidoglycan in the adhesion zone. Gram-negative bacteria have an outer membrane, so, probably, vesicles fuse with it due to a high similarity of their structures. As the result of fusion, enzyme L5 goes out into the periplasmic space and freely diffuses in it; herewith, its concentration may decrease, which can be a cause of a weaker lytic effect.
Jointly with the State Research Center for Applied Microbiology and Biotechnology, we also investigated the lytic action of the vesicle preparation on pathogenic bacteria, including on clinical isolates multiply resistant to antimicrobial preparations (Vasilyeva et al. 2014). Vesicles lyzed excellently all chosen Gram-positive test objects, except lacto- and bifidobacteria (which is of interest), and absolutely failed to lyze Gram-negative test objects. Noteworthy is the efficient lysis of multiply resistant S. aureus (MRSA) strains, clinical isolates of the most widespread hospital-acquired infections.
Curative potential of Lysobacter sp. XL1 vesicles
Recent years have witnessed a significant worldwide increase in the resistance of infection agents to antibiotics. The World Health Organization considers antimicrobial resistance as one of the highest priority problems. In this connection, alternative ways of controlling pathogenic bacteria have to be searched for. Lytic bacterial enzymes capable of dissolving microbial cells are one of such ways. We have begun research into the curative effect of vesicles containing lytic enzyme L5. Vesicles in this case are a model, which in future can be used to develop liposomal antimicrobial preparations.
Jointly with the State Research Center for Applied Microbiology and Biotechnology, we investigated the curative action of vesicles on the anthrax infection, lethal for white outbred mice, induced by Bacillus anthracis vaccine strain 71/12 (Shishkova et al. 2013). Anthrax was modelled using pregerminated spores of B. anthracis 71/12. Mice were treated with vesicles and with doxycycline, an antibiotic traditionally used for these purposes. The treatment with doxycycline was started 3 h after the infection in the first day and was continued once a day for 5 days. The treatment with vesicles was by single dosing 3 h after the infection. The animals were observed for 14 days. As the result, the experimental animals treated with vesicles were found to be totally cured. The animals treated with doxycycline died in the next 10 days after the cancellation of the treatment. In the control group, all animals died in the first 2 days. For prophylaxis of the disease, the preparation of vesicles was introduced 3 h before the infection. As the result, the preparation ensured a 100 % prophylactic protection: not a single animal died. Thus, the efficiency of the vesicle preparation against lethal infection was established.
The next task was to establish the curative action of vesicles on staphylococcal infection caused by methicillin-resistant S. aureus strain 55. S. aureus is one of the prevailing pathogens in hospitals; what is more, as compared with other Gram-positive bacteria, namely strains of this bacterium determine a high mortality rate (Gostev et al. 2015; Yin et al. 2015). To study the therapeutic effect of the vesicle preparation with respect to the systemic staphylococcal sepsis, outbred white mice were infected with a fresh culture of MRSA strain S. aureus 55 into the retro-orbital sinus (Shishkova et al. 2013). The group of experimental animals was injected with the vesicle preparation 3 h after infection; the control group was injected with no preparations. On days 5, 7, 9, 12, and 15, two animals each day were narcotized, dissected, and impression smears of their internal organs were made onto dishes with nutrient medium (Fig. 5). In this infection technique, the culture is isolated from the kidneys and spleen. It is seen in the figure that, in the control group, MRSA S. aureus 55 is seeded from the kidneys during the entire experiment; from the spleen, in 90 % of the cases (Fig. 5a). During the treatment with the vesicle preparation, the internal organs are cleared of the pathogenic bacterium. In one case only, the culture was seeded from the spleen and in two cases from the kidneys (Fig. 5b). Possibly, at an increase of introduced vesicles’ dose the cure will be complete. Thus, the vesicle preparation containing Lysobacter sp. XL1 protein L5 possesses a high curative effect with respect to the chosen model infections. It is evident that this preparation cannot be used in medicine due to its multi-component composition, which can cause an acute allergic reaction. In view of this, the prospects of developing new-generation liposomal antimicrobial drugs based on particular lytic enzymes of Lysobacter sp. XL1 are apparent.
Future prospects
We plan to continue the research into Lysobacter sp. XL1 vesicles. The mapping of the bacterium’s genome will enable us to establish the proteome of vesicles and, possibly, to find additional factors determining the process of their formation.
We would especially like to note the prospects of developing efficient new-generation liposomal antimicrobial drugs that cause no habituation in microorganisms. Modern biotechnological techniques make it possible to develop medicinal products based on liposomes (Gregoriadis 2007). The use of liposomes for delivery of biologically active substances can lead to a decrease of the toxicity of a drug, an increase of its bioavailability and, on the whole, result in the increased efficiency of the therapeutic effect. We have already started such studies.
Based on phospholipids obtained from Lysobacter sp. XL1 vesicles and recombinant bacteriolytic enzyme L5, we have produced a liposomal preparation. Its antimicrobial action on Gram-positive, including multiply resistant, bacteria was studied. The preparation also proved to lyze test objects as efficiently as vesicles and lysoamidase. Our future research will be aimed at further studies of the preparation and its preclinical tests.
References
Ahmed K, Chohnan S, Ohashi H, Hirata T, Masaki T, Sakiyama F (2003) Purification, bacteriolytic activity, and specificity of beta-lytic protease from Lysobacter sp. IB-9374. J Biosci Bioeng 95:27–34. doi:10.1263/jbb.95.27
Amano A, Takeuchi H, Furuta N (2010) Outer membrane vesicles function as offensive weapons in host–parasite interactions. Microbes Infect 12:791–798. doi:10.1016/j.micinf.2010.05.008
Avila-Calderón ED, Araiza-Villanueva MG, Cancino-Diaz JC, Lopez-Villegas EO, Sriranganathan N, Boyle SM, Contreras-Rodríguez A (2015) Roles of bacterial membrane vesicles. Arch Microbiol 197:1–10. doi:10.1007/s00203-014-1042-7
Balsalobre C, Silvan JM, Berglund S, Mizunoe Y, Uhlin BE, Wai SN (2006) Release of the type I secreted α-haemolysin via outer membrane vesicles from Escherichia coli. Mol Microbiol 59:99–112. doi:10.1111/j.1365-2958.2005.04938.x
Begunova EA, Stepnaya OA, Lysanskaya VY, Kulaev IS (2003) Specificity of the action of lysoamidase on Staphylococcus aureus 209P cell walls. Biochemistry (Mosc) 68:735–739. doi:10.1023/A:1025074714910
Beveridge TJ (1999) Structures of gram-negative cell walls and their derived membrane vesicles. J Bacteriol 181:4725–4733
Biller SJ, Schubotz F, Roggensack SE, Thompson AW, Summons RE, Chisholm SW (2014) Bacterial vesicles in marine ecosystems. Science 343:183–186. doi:10.1126/science.1243457
Bone R, Frank D, Kettner CA, Agard DA (1989) Structural analysis of specificity: alpha-lytic protease complexes with analogues of reaction intermediates. Biochemistry 28:7600–7609. doi:10.1021/bi00445a015
Chatterjee SN, Das J (1967) Electron microscopic observations on the excretion of cell-wall material by Vibrio cholerae. J Gen Microbiol 49:1–11. doi:10.1099/00221287-49-1-1
Chowdhury C, Jagannadham MV (2013) Virulence factors are released in association with outer membrane vesicles of Pseudomonas syringae pv. tomato T1 during normal growth. Biochim Biophys Acta 1834:231–239. doi:10.1016/j.bbapap.2012.09.015
Christensen P, Cook FD (1978) Lysobacter, a new genus of nonfruiting, gliding bacteria with a high base ratio. Int J Syst Bacteriol 28:367–393. doi:10.1099/00207713-28-3-367
Cimmino A, Puopolo G, Perazzolli M, Andolfi A, Melck D, Pertot I, Evidente A (2014) Cyclo(L-PRO-L-TYR), the fungicide isolated from Lysobacter capsici AZ78: a structure–activity relationship study. Chem Heterocycl Compd 50:290–295. doi:10.1007/s10593-014-1475-6
Ciofu O, Beveridge TJ, Kadurugamuwa J, Walther-Rasmussen J, Høiby N (2000) Chromosomal β-lactamase is packaged into membrane vesicles and secreted from Pseudomonas aeruginosa. J Antimicrob Chemother 45:9–13. doi:10.1093/jac/45.1.9
de Bruijn I, Cheng X, de Jager V, Expósito RG, Watrous J, Patel N, Postma J, Dorrestein PC, Kobayashi D, Raaijmakers JM (2015) Comparative genomics and metabolic profiling of the genus Lysobacter. BMC Genomics 16:991. doi:10.1186/s12864-015-2191-z
Ellis TN, Kuehn MJ (2010) Virulence and immunomodulatory roles of bacterial outer membrane vesicles. Microbiol Mol Biol Rev 74:81–94. doi:10.1128/MMBR.00031-09
Evans AG, Davey HM, Cookson A, Currinn H, Cooke-Fox G, Stanczyk PJ, Whitworth DE (2012) Predatory activity of Myxococcus xanthus outer-membrane vesicles and properties of their hydrolase cargo. Microbiology 158:2742–2752. doi:10.1099/mic.0.060343-0
Fujishige A, Smith KR, Silen JL, Agard DA (1992) Correct folding of α-lytic protease is required for its extracellular secretion from Escherichia coli. J Cell Biol 118:33–42
Gostev VV, Kalinogorskaya OS, Popenko LN, Chernenkaya TV, Naumenko ZS, Voroshilova TM, Zakharova YA, Khokhlova OE, Kruglov AN, Ershova MG, Molchanova IV, Sidorenko SV (2015) Antibiotic Resistance of MRSA in the Russian Federation Antibiot Khimioter(in Russian) 60: 3–9
Granovsky IE, Kalinin AE, Lapteva YS, Latypov OR, Vasilyeva NV, Tsfasman IM, Stepnaya OA, Kulaev IS, Muranova TA, Krasovskaya LA (2010) Lytic protease AlpA of the bacterium Lysobacter sp. XL1, a DNA fragment coding for lytic protease AlpA of the bacterium Lysobacter sp. XL1, and a method of producing lytic protease AlpA of the bacterium Lysobacter sp. XL1 RF Patent No. 2407782 (in Russian)
Granovsky IE, Kalinin AE, Lapteva YS, Latypov OR, Vasilyeva NV, Tsfasman IM, Stepnaya OA, Kulaev IS, Muranova TA, Krasovskaya LA (2011) Lytic protease AlpB of the bacterium Lysobacter sp. XL1, a DNA fragment coding for lytic protease AlpB of the bacterium Lysobacter sp. XL1, and a method of producing lytic protease AlpB of the bacterium Lysobacter sp. XL1 RF Patent No. 2408725 (in Russian)
Gregoriadis G (2007) Liposome technology, third edn. Informa Healthcare, New York–London
Haurat MF, Aduse Opoku J, Rangarajan M, Dorobantu L, Gray MR, Curtis MA, Feldman MF (2011) Selective sorting of cargo proteins into bacterial membrane vesicles. J Biol Chem 286:1269–1276. doi:10.1074/jbc.M110.185744
Hayashi J, Hamada N, Kuramitsu HK (2002) The autolysin of Porphyromonas gingivalis is involved in outer membrane vesicle release. FEMS Microbiol Lett 216:217–222. doi:10.1111/j.1574-6968.2002.tb11438.x
Hoekstra D, van der Laan JW, de Leij L, Witholt B (1976) Release of outer membrane fragments from normally growing Escherichia coli. Biochim Biophys Acta 455:889–899
Horstman AL, Kuehn MJ (2000) Enterotoxigenic Escherichia coli secretes active heat-labile enterotoxin via outer membrane vesicles. J Biol Chem 275:12489–12496. doi:10.1074/jbc.275.17.12489
Kadurugamuwa JL, Beveridge TJ (1995) Virulence factors are released from Pseudomonas aeruginosa in association with membrane vesicles during normal growth and exposure to gentamicin: a novel mechanism of enzyme secretion. J Bacteriol 177:3998–4008
Kadurugamuwa JL, Beveridge TJ (1996) Bacteriolytic effect of membrane vesicles from Pseudomonas aeruginosa on other bacteria including pathogens: conceptually new antibiotics. J Bacteriol 178:2767–2774
Kadurugamuwa JL, Beveridge TJ (1997) Natural release of virulence factors in membrane vesicles by Pseudomonas aeruginosa and the effect of aminoglycoside antibiotics on their release. J Antimicrob Chemother 40:615–621. doi:10.1093/jac/40.5.615
Kaparakis-Liaskos M, Ferrero RL (2015) Immune modulation by bacterial outer membrane vesicles. Nat Rev Immunol 15:375–387. doi:10.1038/nri3837
Kato A, Nakaya S, Kokubo N, Aiba Y, Ohashi Y, Hirata H, Fujii K, Harada K (1998) A new anti-MRSA antibiotic complex, WAP-8294A. I. Taxonomy, isolation and biological activities. J Antibiot (Tokyo) 51:929–935. doi:10.7164/antibiotics.51.929
Kato S, Kowashi Y, Demuth DR (2002) Outer membrane-like vesicles secreted by Acinobacillus actinomycetemcomitans are enriched in leukotoxin. Microb Pathog 32:1–13. doi:10.1006/mpat.2001.0474
Ko HS, Jin RD, Krishnan HB, Lee SB, Kim KY (2009) Biocontrol ability of Lysobacter antibioticus HS124 against Phytophthora blight is mediated by the production of 4-hydroxyphenylacetic acid and several lytic enzymes. Curr Microbiol 59:608–615. doi:10.1007/s00284-009-9481-0
Kobayashi H, Uematsu K, Hirayama H, Horikoshi K (2000) Novel toluene elimination system in a toluene-tolerant microorganism. J Bacteriol 182:6451–6455. doi:10.1128/JB.182.22.6451-6455.2000
Kudryakova IV, Suzina NE, Vasilyeva NV (2015) Biogenesis of Lysobacter sp. XL1 vesicles. FEMS Microbiol Lett:362. doi:10.1093/femsle/fnv137
Kuehn MJ, Kesty NC (2005) Bacterial outer membrane vesicles and the host–pathogen interaction. Genes Dev 19:2645–2655. doi:10.1101/gad.1299905
Kulaev IS, Stepnaya OA, Tsfasman IM, Tchermenskaja TS, Ledova LA, Zubrizkaja LG, Akimenko VK (2006) Bacteriolytic complex, method for producing said complex and strain for carrying out said method. U.S. Patent 7150985 B2
Kulkarni HM, Swamy CV, Jagannadham MV (2014) Molecular characterization and functional analysis of outer membrane vesicles from the antarctic bacterium Pseudomonas syringae suggest a possible response to environmental conditions. J Proteome Res 13:1345–1358. doi:10.1021/pr4009223
Kulp A, Kuehn MJ (2010) Biological functions and biogenesis of secreted bacterial outer membrane vesicles. Annu Rev Microbiol 64:163–184. doi:10.1146/annurev.micro.091208.073413
Lapteva YS, Zolova OE, Shlyapnikov MG, Tsfasman IM, Muranova TA, Stepnaya OA, Kulaev IS, Granovsky IE (2012) Cloning and expression analysis of genes encoding lytic endopeptidases L1 and L5 from Lysobacter sp. strain XL1. Appl Environ Microbiol 8:7082–7089. doi:10.1128/AEM.01621-12
Lee EY, Choi DS, Kim KP, Gho YS (2008) Proteomics in gram-negative bacterial outer membrane vesicles. Mass Spectrom Rev 27:535–555. doi:10.1002/mas.20175
Li Z, Clarke AJ, Beveridge TJ (1996) A major autolysin of Pseudomonas aeruginosa: subcellular distribution, potential role in cell growth and division and secretion in surface membrane vesicles. J Bacteriol 178:2479–2488
Li Z, Clarke AJ, Beveridge TJ (1998) Gram-negative bacteria produce membrane vesicles which are capable of killing other bacteria. J Bacteriol 180:5478–5483
Mashburn-Warren LM, Whiteley M (2006) Special delivery: vesicle trafficking in prokaryotes. Mol Microbiol 61:839–846. doi:10.1111/j.1365-2958.2006.05272.x
Mashburn-Warren L, McLean RJ, Whiteley M (2008) Gram-negative outer membrane vesicles: beyond the cell surface. Geobiology 6:214–219. doi:10.1111/j.1472-4669.2008.00157.x
Mayrand D, Grenier D (1989) Biological activities of outer membrane vesicles. Can J Microbiol 35:607–613. doi:10.1139/m89-097
McBroom AJ, Kuehn MJ (2007) Release of outer membrane vesicles by Gram-negative bacteria is a novel envelope stress response. Mol Microbiol 63:545–558. doi:10.1111/j.1365-2958.2006.05522.x
Moon DC, Choi CH, Lee JH, Choi CW, Kim HY, Park JS, Kim SI, Lee JC (2012) Acinetobacter baumannii outer membrane protein a modulates the biogenesis of outer membrane vesicles. J Microbiol 50:155–160. doi:10.1007/s12275-012-1589-4
Ogura J, Toyoda A, Kurosawa T, Chong AL, Chohnan S, Masaki T (2006) Purification, characterization, and gene analysis of cellulase (Cel8A) from Lysobacter sp. IB-9374. Biosci Biotechnol Biochem 70:2420–2428. doi:10.1271/bbb.60157
Olofsson A, Vallström A, Petzold K, Tegtmeyer N, Schleucher J, Carlsson S, Haas R, Backert S, Wai SN, Gröbner G, Arnqvist A (2010) Biochemical and functional characterization of Helicobacter pylori vesicles. Mol Microbiol 77:1539–1555. doi:10.1111/j.1365-2958.2010.07307.x
Olofsson A, Nygård Skalman L, Obi I, Lundmark R, Arnqvist A (2014) Uptake of Helicobacter pylori vesicles is facilitated by clathrin-dependent and clathrin-independent endocytic pathways. MBio 5:e00979–e00914. doi:10.1128/mBio.00979-14
Olsen I, Amano A (2015) Outer membrane vesicles—offensive weapons or good Samaritans? J Oral Microbiol 7:27468. doi:10.3402/jom.v7.27468
Palumbo JD, Sullivan RF, Kobayashi DY (2003) Molecular characterization and expression in Escherichia coli of three beta-1,3-glucanase genes from Lysobacter enzymogenes strain N4-7. J Bacteriol 185:4362–4370. doi:10.1128/JB.185.15.4362-4370.2003
Palumbo JD, Yuen GY, Jochum CC, Tatum K, Kobayashi DY (2005) Mutagenesis of beta-1,3-glucanase genes in Lysobacter enzymogenes strain C3 results in reduced biological control activity toward Bipolaris leaf spot of tall fescue and Pythium damping-off of sugar beet. Phytopathology 95:701–707. doi:10.1094/PHYTO-95-0701
Pérez-Cruz C, Carrion O, Delgado L, Martinez G, Lopez-Iglesias C, Mercade E (2013) New type of outer membrane vesicle produced by the Gram-negative bacterium Shewanella vesiculosa M7T: implications for DNA content. Appl Environ Microbiol 79:1874–1881. doi:10.1128/AEM.03657-12
Pérez-Cruz C, Delgado L, López-Iglesias C, Mercade E (2015) Outer-inner membrane vesicles naturally secreted by gram-negative pathogenic bacteria. PLoS One 10:e0116896. doi:10.1371/journal.pone.0116896
Pidot SJ, Coyne S, Kloss F, Hertweck C (2014) Antibiotics from neglected bacterial sources. Int J Med Microbiol 304:14–22. doi:10.1016/j.ijmm.2013.08.011
Puopolo G, Cimmino A, Palmieri MC, Giovannini O, Evidente A, Pertot I (2014) Lysobacter capsici AZ78 produces cyclo(L-Pro-L-Tyr), a 2,5-diketopiperazine with toxic activity against sporangia of Phytophthora infestans and Plasmopara viticola. J Appl Microbiol 117:1168–1180. doi:10.1111/jam.12611
Reichenbach H (2006) The genus Lysobacter. In: Dworkin M, Falkow S, Rosenberg E, Schleifer KH, Stackebrandt E (eds) The prokaryotes, 3rd edn. Springer, New York, pp. 939–957
Renelli M, Matias V, Lo RY, Beveridge TJ (2004) DNA-containing membrane vesicles of Pseudomonas aeruginosa PAO1 and their genetic transformation potential. Microbiology 150:2161–2169. doi:10.1099/mic.0.26841-0
Roier S, Blume T, Klug L, Wagner GE, Elhenawy W, Zangger K, Prassl R, Reidl J, Daum G, Feldman MF, Schild S (2015) A basis for vaccine development: comparative characterization of Haemophilus influenzae outer membrane vesicles. Int J Med Microbiol 305:298–309. doi:10.1016/j.ijmm.2014.12.005
Rompikuntal PK, Thay B, Khan MK, Alanko J, Penttinen AM, Asikainen S, Wai SN, Oscarsson J (2012) Perinuclear localization of internalized outer membrane vesicles carrying active cytolethal distending toxin from Aggregatibacter actinomycetemcomitans. Infect Immun 80:31–42. doi:10.1128/IAI.06069-11
Sabra W, Lünsdorf H, Zeng AP (2003) Alterations in the formation of lipopolysaccharide and membrane vesicles on the surface of Pseudomonas aeruginosa PAO1 under oxygen stress conditions. Microbiology 149:2789–2795. doi:10.1099/mic.0.26443-0
Schertzer JW, Whiteley M (2012) A bilayer-couple model of bacterial outer membrane vesicle biogenesis. MBio 3:e00297–e00211. doi:10.1128/mBio.00297-11
Schwechheimer C, Kuehn MJ (2015) Outer-membrane vesicles from Gram-negative bacteria: biogenesis and functions. Nat Rev Microbiol 13:605–619. doi:10.1038/nrmicro3525
Schwechheimer C, Sullivan CJ, Kuehn MJ (2013) Envelope control of outer membrane vesicle production in Gram-negative bacteria. Biochemistry 52:3031–3040. doi:10.1021/bi400164t
Schwechheimer C, Kulp A, Kuehn MJ (2014) Modulation of bacterial outer membrane vesicle production by envelope structure and content. BMC Microbiol 14:324. doi:10.1186/s12866-014-0324-1
Shishkova NA, Kudryakova IV, Suzina NE, Tsfasman IM, Vasilyeva NV (2013) The therapeutic and preventive effect of outer membrane vesicles of Lysobacter sp. XL1 containing bacteriolytic enzyme L5. In: Kolomiets EI (ed) Microbial biotechnology: fundamental and applied aspects, T5. Belarusian Science, Minsk (in Russian), pp 538–547
Silen JL, Frank D, Fujishige A, Bone R, Agard DA (1989) Analysis of prepro-α-lytic protease expression in Escherichia coli reveals that the pro region is required for activity. J Bacteriol 171:1320–1325
Stepnaya OA, Begunova EA, Tsfasman IM, Kulaev IS (1996) Bacteriolytic enzyme preparation of lysoamidase. Purification and some properties of bacteriolytic peptidase L1. Biokhimiya (in Russian) 61:656–663
Stepnaya OA, Tsfasman IM, Logvina IA, Ryazanova LP, Muranova TA, Kulaev IS (2005) Isolation and characterization of a new extracellular bacteriolytic endopeptidase of Lysobacter sp. XL1. Biochemistry (Mosc) 70:1031–1037. doi:10.1007/s10541-005-0221-1
Tashiro Y, Sakai R, Toyofuku M, Sawada I, Nakajima-Kambe T, Uchiyama H, Nomura N (2009) Outer membrane machinery and alginate synthesis regulators control membrane vesicle production in Pseudomonas aeruginosa. J Bacteriol 191:7509–7519. doi:10.1128/JB.00722-09
Tashiro Y, Inagaki A, Shimizu M, Ichikawa S, Takaya N, Nakajima-Kambe T, Uchiyama H, Nomura N (2011) Characterization of phospholipids in membrane vesicles derived from Pseudomonas aeruginosa. Biosci Biotechnol Biochem 75:605–607. doi:10.1271/bbb.100754
Tashiro Y, Uchiyama H, Nomura N (2012) Multifunctional membrane vesicles in Pseudomonas aeruginosa. Environ Microbiol 14:1349–1362. doi:10.1111/j.1462-2920.2011.02632.x
Vasilyeva NV, Tsfasman IM, Suzina NE, Stepnaya OA, Kulaev IS (2008) Secretion of bacteriolytic endopeptidase L5 of Lysobacter sp. XL1 into the medium by means of outer membrane vesicles. FEBS J 275:3827–3835. doi:10.1111/j.1742-4658.2008.06530.x
Vasilyeva NV, Tsfasman IM, Suzina NE, Stepnaya OA, Kulaev IS (2009) Outer membrane vesicles of Lysobacter sp. Dokl Biochem Biophys 426:139–142. doi:10.1134/S1607672909030041
Vasilyeva NV, Tsfasman IM, Kudryakova IV, Suzina NE, Shishkova NA, Kulaev IS, Stepnaya OA (2013) The role of membrane vesicles in secretion of Lysobacter sp. bacteriolytic enzymes. J Mol Microbiol Biotechnol 23:142–151. doi:10.1159/000346550
Vasilyeva NV, Shishkova NA, Marinin LI, Ledova LA, Tsfasman IM, Muranova TA, Stepnaya OA, Kulaev IS (2014) Lytic peptidase L5 of Lysobacter sp. XL1 with broad antimicrobial spectrum. J Mol Microbiol Biotechnol 24:59–66. doi:10.1159/000356838
Wang W, Chanda W, Zhong M (2015) The relationship between biofilm and outer membrane vesicles: a novel therapy overview. FEMS Microbiol Lett 362:fnv117. doi:10.1093/femsle/fnv117
Wensink J, Witholt B (1981) Outer membrane vesicles released by normally growing Escherichia coli contain very little lipoprotein. Eur J Biochem 116:331–335. doi:10.1111/j.1432-1033.1981.tb05338.x
Xie H (2015) Biogenesis and function of Porphyromonas gingivalis outer membrane vesicles. Future Microbiol 10:1517–1527. doi:10.2217/fmb.15.63
Xie Y, Wright S, Shen Y, Du L (2012) Bioactive natural products from Lysobacter. Nat Prod Rep 29:1277–1287. doi:10.1039/c2np20064c
Yaron S, Kolling GL, Simon L, Matthews KR (2000) Vesicle-mediated transfer of virulence genes from Escherichia coli O157:H7 to other enteric bacteria. Appl Environ Microbiol 66:4414–4420. doi:10.1128/AEM.66.10.4414-4420.2000
Yin S, Rao G, Wang J, Luo L, He G, Wang C, Ma C, Luo X, Hou Z, Xu G (2015) Roemerine improves the survival rate of septicemic BALB/c mice by increasing the cell membrane permeability of Staphylococcus aureus. PLoS One 10:e0143863. doi:10.1371/journal.pone.0143863
Zhou L, Srisatjaluk R, Justus DE, Doyle RJ (1998) On the origin of membrane vesicles in gram-negative bacteria. FEMS Microbiol Lett 163:223–228. doi:10.1111/j.1574-6968.1998.tb13049.x
Zielke RA, Wierzbicki IH, Weber JV, Gafken PR, Sikora AE (2014) Quantitative proteomics of the Neisseria gonorrhoeae cell envelope and membrane vesicles for the discovery of potential therapeutic targets. Mol Cell Proteomics 13:1299–1317. doi:10.1074/mcp.M113.029538
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We are grateful to Victor Selivanov for English translation.
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All applicable institutional guidelines for the care and use of animals were followed. Experiments with animals were approved by the bioethics commission of the State Research Center for Applied Microbiology and Biotechnology. Works with animals were conducted in accordance with Russian Federation legislation and the Directive of the European Parliament and the Council of the European Union on Protection of Animals used for Scientific Purposes.
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This work was supported by the Ministry of Education and Science of the Russian Federation, RFMEFI60714X0013 (Agreement No. 14.607.21.0013).
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Kudryakova, I.V., Shishkova, N.A. & Vasilyeva, N.V. Outer membrane vesicles of Lysobacter sp. XL1: biogenesis, functions, and applied prospects. Appl Microbiol Biotechnol 100, 4791–4801 (2016). https://doi.org/10.1007/s00253-016-7524-6
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DOI: https://doi.org/10.1007/s00253-016-7524-6