Abstract
Xenobiotic compounds are resistant to degradation by the native micro-organisms present in the environment. This causes their accumulation and persistence in the environment with the subsequent detrimental effects not only for our ecosystem but also for human health. Therefore, the treatment of such compounds is an urgent need. The current existing methods for wastewater treatment are relatively ineffective against xenobiotic compounds; they are expensive and relatively environmentally unfriendly. This has compelled the search for new approaches. In this sense, the potential use of white-rot fungi to treat this type of compounds has been studied intensively in the past decades. These fungi are the only micro-organisms able to mineralise the recalcitrant biopolymer lignin. Their unique ability to degrade lignin is due to the secretion of an extracellular, non-specific and free-radical-based enzymatic system.
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1 Introduction
Industrial effluents from different industries contain a high load of pollutants, which could cause detrimental effects to the ecosystem if they are released without pre-treatment. Most of these compounds are xenobiotics i.e., strange to the biosphere, and are resistant to the biodegradation by the indigenous micro-organisms. In addition, most of them are harmful to living beings including humans. Therefore, they have to be removed before being released into the environment. However, the physico, chemical and physico-chemical in-use techniques for the treatment of wastewater fail in degrading such compounds resulting in their accumulation in the environment, posing a hazard to the plants, animals and humans. Consequently, alternative methods to remove xenobiotic compounds from wastewater are needed. The use of biological degradation is seen as an economic and ecological alternative to remove hazardous compounds from wastewater. Among them, the use of white-rot fungi (WRF) represents a promising approach.
WRF have the unique ability to degrade the bulky, heterogeneous and recalcitrant polymer lignin (Fig. 5.1). This ability is due to the secretion of an extracellular non-specific enzymatic complex during their secondary metabolism (idiophasic), usually under nitrogen depletion. This enzymatic complex is mainly composed of lignin peroxidases (LiPs), manganese-dependent peroxidases (MnPs), versatile peroxidases (VPs) and laccases together with accessory enzymes (mostly H2O2-generating oxidases and dehydrogenases) (Mester et al. 2004).
The ligninolytic enzymes secreted by the WRF have wide substrate specificity and are able to degrade a wide variety of complex molecules and even a mixture of them. This ability has driven the interest in the development of biotechnology processes based on WRF in the past couple of decades. However, studies dealing with the treatment of real wastewater are scarce. Therefore, in this chapter the latest research on xenobiotic removal from real wastewater by WRF is reviewed.
2 White-Rot Fungi
WRF are filamentous wood-degrading fungi, ubiquitous in nature. Most WRF belong to the Basidiomycota phylum (Polyporales and Agaricales orders) and together with some related litter-decomposing fungi are the only organisms able to mineralise lignin efficiently (Kirk and Cullen 1998; Hatakka 2001a, b).
Some WRF as grown in nature are shown in Fig. 5.2. The fungus Phanerochaete chrysosporium (order Thelephorales) was the first white-rot fungus studied and has become a model fungus for lignin biodegradation studies. The name white-rot derives from the bleached appearance of the wood attacked by these fungi due to the removal of the dark coloured lignin (Fig. 5.3). They grow mostly on hardwoods e.g., birch and aspen, although certain species grow on softwoods such as spruce and pine (Blanchette 1995). Some WRF degrade all wood components (i.e., cellulose, hemicellulose and lignin) simultaneously whereas others degrade lignin selectively. The former are called simultaneous or non-selective white-rot degraders and the latter selective white-rot degraders. The selective white-rot degraders are very interesting from a biotechnological point of view, since they remove lignin leaving the valuable cellulose intact (Dashtban et al. 2010). Simultaneous white-rot occurs mainly on hardwoods, whereas selective white-rot occurs both on hardwood and softwood. The typical characteristics of selective and simultaneous white-rot types are summarised in Table 5.1.
The same mechanism that gives these fungi the potential to degrade lignin also allows them to degrade a wide variety of recalcitrant pollutants. Hence, the WRF are promising and attractive candidates for the bioremediation of xenobiotic compounds.
The mechanism used by the WRF to degrade pollutants gives them several advantages (Christian et al. 2005). For example:
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The WRF are able to mineralise a wide variety of toxic xenobiotics and complex mixtures as their enzymatic system is non-specific, non-stereoselective and based on free radicals.
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The WRF are ubiquitously found in nature.
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The WRF are able to oxidise low soluble compounds at high concentrations due to the extracellular nature of their main enzymatic system.
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The ligninolytic system of the WRF is triggered by nutrient limitation; hence, they do not need any pre-conditioning of the target pollutant.
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The WRF can degrade very low pollutant concentrations to non-detectable levels.
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The WRF can be cultivated on inexpensive substrates like agro and forestry wastes as well as in liquid media and in soil.
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The WRF also produce oxygen radicals (e.g., OH·) which are able to oxidise biomolecules such as proteins and DNA, and help to destroy microbes.
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The WRF are able to adjust the pH of their surrounding environment using the plasma membrane-dependent redox system.
The above-mentioned advantages helped to generate much interest in the development of technologies based on WRF for the biodegradation of hazardous and recalcitrant pollutants.
3 Enzymatic System of WRF
In addition to lignin, WRF can oxidise a wide variety of organic compounds with structural similarities to lignin including soil humic substances (Hofrichter et al. 1998), organic pollutants (Tuomela and Hatakka 2011a, b) and synthetic dyes (Glenn and Gold 1983).
WRF usually produce one or more ligninolytic enzymes in different combinations according to which they can be divided into four groups (Hatakka 1994; Tuor et al. 1995; Nerud and Misurcova 1996): (i) laccase, LiP and MnP-producing, (ii) laccase and at least one of the peroxidases, (iii) laccases only and (iv) peroxidases only.
The ligninolytic enzymes most frequently found in the WRF are laccases and MnPs, and the least, LiPs and VPs. The ligninolytic enzymes can act jointly or separately but accessory enzymes (glyoxal oxidase, aryl alcohol oxidase, pyranose 2-oxidase, cellobiose dehydrogenase, etc.) are required to complete the process of lignin or xenobiotic degradation. In addition, intracellular cytochrome P450 monooxygenases as well as low-molecular mass oxidants such as hydroxyl radicals and chelated Mn3+ have also shown to be involved in the degradation of lignin and many xenobiotics (ten Have and Teunissen 2001; Hammel et al. 2002; Subramanian and Yadav 2009; Taboada-Puig et al. 2011). Recently dye-decolourising peroxidases (DyPs), involved in the decolouration of high redox potential synthetic dyes and non-phenolic lignin model compounds (Liers et al. 2010), and aromatic peroxygenases (APOs), involved in the catalysis of oxygen transfer reactions resulting in the cleavage of ethers (Hofrichter et al. 2010; Liers et al. 2011), have been found to be part of the ligninolytic system of the WRF. The main ligninolytic enzymes, their substrates and reactions are summarised in Table 5.2.
It is worth pointing out that although a white-rot fungus species can potentially secrete laccase, MnP and LiP, a particular strain may not secrete all of them. Thus, for instance Trametes versicolor generally produces all the three enzymes (i.e., laccase, MnP and LiP) but laccase may be predominant in certain strains (Yang et al. 2013). In addition, the secretion of specific enzymes may also depend on the culture conditions including the composition of the growth medium.
The characteristic of the main ligninolytic enzymes are presented in Table 5.3.
3.1 Lignin Peroxidases
Lignin peroxidases (EC 1.11.1.14, 1,2-bis(3,4-dimethoxyphenyl)propane-1,3-diol:hydrogen-peroxide oxidoreductase, family 2 at http://www.cazy.org, LiPs) were first discovered in the white-rot fungus Phanerochaete chrysosporium in the mid-1980s. They are considered as true ligninases since they directly catalyse lignin oxidation. LiPs are glycoproteins and contain an iron protoporphyrin IX (heme) as a prosthetic group.
LiPs catalyse the monoelectronic and H2O2-dependent oxidation of a wide variety of aromatic compounds through a multistep reaction. These reactions induce the formation of aryl cationic radicals, which further undergo many non-enzymatic reactions generating a number of end products such as glycolate and oxalate. Both the catalytic cycle (Fig. 5.4) and the enzymatic intermediates are similar to those of the other peroxidases. Veratryl alcohol enhances the action of LiP on many substrates, including lignin (Hammel et al. 1993), by acting as a mediator (Harvey et al. 1986) or by protecting the enzyme against inactivation by H2O2 (Wariishi and Gold 1989).
3.2 Manganese-Dependent Peroxidases
Manganese-dependent peroxidases (EC 1.11.1.13, Mn(II)-hydrogen-peroxide oxidoreductase, family 2 at http://www.cazy.org, MnPs). The first extracellular MnP was purified from P. chrysosporium and its expression and production showed to be regulated by the presence of Mn(II) in the culture medium (Bonnarme and Jeffries 1990). The catalytic cycle of MnP (Fig. 5.5) is essentially the same as for LiP with the exception that Mn(II) is necessary to complete the cycle.
3.3 Laccases
Laccases (EC 1.10.3.2, p-diphenol:oxygen oxidoreductases, lignin oxidases family 1, http://www.cazy.org/Auxiliary-Activities.html) are multi-copper-containing oxidases which catalyse the four-electron reduction of O2 to water coupled with the oxidation of various organic substrates. They are widely distributed in nature and are found in plants, fungi, bacteria (Dwivedi et al. 2011) and a few insects (Xu 1999).
Laccases cannot directly oxidise all substrates either because of their large size, which hinders their introduction into the enzyme active site, or because of their particular high redox potential. However, it was shown that in the presence of low-molecular weight organic compounds acting as electron transfer mediators, laccases were also able to oxidise non-phenolic structures (Bourbonnais and Paice 1990; Call and Mücke 1997). The first step of the laccase mediator system (LMS) is the oxidation of the mediator by the laccase enzyme. Then, the oxidised mediator oxidises the bulky or high redox potential substrate. Thus, the mediator acts as an electron shuttle between the substrate and the enzyme (Galli and Gentili 2004; Widsten and Kandelbauer 2008).
Figure 5.6 represents the catalytic cycle of laccase. In typical interactions of laccase with a substrate, the catalytic site of laccase abstracts electrons from the substrate and releases an oxidised product. When a mediator is present, the mediator can be oxidised by laccase and further oxidises another compound that is either a substrate or a non-substrate of laccase resulting in the formation of oxidised product(s) and the mediator regeneration (Banci et al. 1999).
3.4 Versatile Peroxidases
Versatile peroxidases (EC 1.11.1.16, hybrid peroxidases, polyvalente peroxidases, family 2 at http://www.cazy.org, VPs) share catalytic properties of both LiP and MnP (Dosoretz and Reddy 2007; Hofrichter et al. 2010). Thus like MnPs, they have high affinity for Mn(II) and catalyse the oxidation of Mn(II) to Mn(III) and oxidise both phenolic and non-phenolic substrates in the absence of Mn(II) like LiPs.
VPs seem to be produced only by fungi from the genera Pleurotus, Bjerkandera and Lepista (Heinfling et al. 1998; Mester and Field 1998; Ruiz-Dueñas et al. 1999; Zorn et al. 2003) and maybe also by Panus and Trametes species (Martinez 2002; Lisov et al. 2003). In Fig. 5.7 the catalytic cycle of VP is depicted (Pérez-Boada et al. 2005).
3.5 Dye-Decolourising Peroxidases
Dye-decolourising peroxidases (DyP-type peroxidases; EC 1.11.1.19, DyPs) are glycoproteins having one heme as a cofactor and require H2O2 for all enzyme reactions, indicating that they function as peroxidases. They are named after their ability to oxidise a wide range of synthetic dyes, in particular, anthraquinonic dyes, which are poorly oxidised by other peroxidases (Kim and Shoda 1999; Passardi et al. 2005; Sugano 2009). In addition, they function under lower pH conditions than other peroxidases. A very important characteristic of DyPs is that they have a free position for the H2O2 binding (Petrides and Nauseef 2000).
Typical peroxidase substrates degraded by DyPs are, for example, 2,2´ azinobis-(3-ethylbenzthiazoline-6-sulphonate and phenolic compounds. DyPs have also been reported to cleave β-carotene and other carotenoids as well as oxidise methoxylated aromatics such as veratryl alcohol and non-phenolic β-O-4 lignin model compounds (van Bloois et al. 2009; Zelena et al. 2009; Liers et al. 2010). However, their physiological function still remains unclear.
4 Xenobiotics Degraded by WRF
The ability of the WRF to degrade xenobiotic compounds comes from their ability to degrade lignin, since it resembles the chemical structure of many xenobiotics (Fig. 5.8). Thus, the same mechanisms that give the WRF the ability to degrade lignin can be used to degrade a wide variety of recalcitrant pollutants. Under ligninolytic conditions, many xenobiotics are oxidised and mineralised to different extents by the WRF (Field et al. 1993).
Several reviews about environmental pollutant degradation by the WRF have already been published (Bumpus et al. 1985; Reddy 1995; Raghukumar et al. 2008; Pointing 2001; Reddy and Mathew 2001; Wesenberg et al. 2003; Chang 2008; Pinedo-Rivlla et al. 2009; Majeau et al. 2010). However, there are few reports focused on the application of WRF in the treatment of real wastewater. In this section, recent reports on xenobiotic removal from real wastewater are reviewed (Table 5.4).
4.1 Pharmaceuticals
Accinelli et al. (2010) studied the potential of P. chrysosporium entrapped in granular bioplastics to remove different pharmaceutical compounds (i.e., the antiviral drug oseltamivir and the antibiotics erythromycin, sulfamethoxazole and ciprofloxacin) from a municipal wastewater treatment plant (WWTP). It was found that the antibiotics were more readily removed by P. chrysosporium than the antiviral drug (Table 5.4). DNA analysis showed that fungal growth was mainly confined to the bioplastic carriers making it easy to insert the fungus to the polluted site.
Zhang and Geissen (2012) studied the degradation of carbamazepine in an effluent from a municipal WWTP by P. chrysosporium immobilised on polyether foam in a novel plate bioreactor. Carbamazepine (1 mg/L) was removed by 60 % in 100 days of continuous operation provided that additional glucose and nitrogen were supplied.
Cruz-Morató et al. (2013) reported for the first time the degradation of pharmaceutical compounds (PhACs) in urban wastewater by T. versicolor pellets in a batch fluidised-bed bioreactor operating under non-sterile conditions where 50 % of the detected PhACs was removed. In addition, a considerable reduction in toxicity was achieved after the fungal treatment. In the following study, Cruz-Morató et al. (2014) reported the removal of PhACs and endocrine disruptor compounds (EDCs) from hospital effluents under sterile and non-sterile conditions using the same approach. They found that the overall load removal was 83.2 % under sterile and 53.3 % under non-sterile conditions after 8 days of treatment. In addition, toxicity tests showed the reduction of wastewater toxicity after the fungal treatment.
Gros et al. (2014) studied the degradation of the X-ray contrast agent iopromide (IOP) and the antibiotic ofloxacin (OFLOX) in hospital wastewater by T. versicolor in a 10-L fluidised-bioreactor. They found that within 8 days, IOP and OFLOX were degraded by 87 and 98.5 % respectively, under sterile conditions, and by 65.4 and 99 % respectively, under non-sterile conditions. In addition, toxicity of the treated wastewater was reduced after the fungal treatment.
4.2 Textile Wastewater
Anastasi et al. (2010) reported the ability of Bjerkandera adusta to treat wastewater from a textile factory in a fixed-bed reactor operated in continuous mode. This fungus was able to decolourise the effluent up to 84 % during 10 cycles under non-sterile conditions. In addition, the chemical oxygen demand (COD) and the toxicity were effectively reduced after the fungal treatment. Subsequently, Anastasi et al. (2011) tested the capacity of the same fungus to degrade wastewater from a textile industry after a secondary treatment and found that the fungal treatment decolourised the effluent by 40 % in 24 h. Further, they (Anastasi et al. 2012) showed that fungal treatment with Trametes pubescens followed by activated sludge of wastewater from a cotton dyeing industry led to very good results in terms of decolouration (76 % in 24 h), COD reduction and toxicity removal. However, the scale-up in a 5-L moving-bed bioreactor (working volume 2 L) with T. pubescens immobilised on 2 cm3 cubes of polyurethane foam (PUF) led to lower decolouration (30 %). Therefore, optimisation of the reactor technology is needed before fungal treatment could be successfully applied.
Sangeeta et al. (2011) studied the decolouration of textile wastewater by P. chrysosporium in shaken flasks and found that the decolouration of raw wastewater was negligible. Nevertheless, when wastewater was diluted with medium containing glucose and other nutrients, the decolouration considerably increased (84 % in 6 days).
Osorio-Echavarría et al. (2012) reported the decolouration of textile wastewater by the white-rot fungus anamorph R1 of Bjerkandera sp. under sterile and non-sterile conditions. The former led to a decolouration percentage of 65 % in 8 days, whereas the latter led to a decolouration percentage of 40 % for the same period of time. The decolouration under non-sterile conditions was mainly due to dye adsorption onto fungal mycelium since the pH increased affecting both the fungus and the ligninolytic enzymes. They found that the presence of high concentration of salts (i.e. NaCl and Na2CO3) in the wastewater favoured the decolouration process. This indicates that the fungus anamorph R1 of Bjerkandera sp. is able to grow under hypersaline conditions. This makes this fungus advantageous for the treatment of industrial effluents with high salt concentrations such as those from the textile industries.
Pakshirajan and Kheria (2012) investigated the continuous treatment of textile wastewater by P. chrysosporium in a rotating biological contactor reactor operating at an HRT of 48 h. The fungus was able to decolourise the effluent by more than 64 % when diluted with media containing glucose. Maximum decolouration efficiencies of 83 and 80 % were attained with 10 and 5 g/L of glucose respectively.
de Miranda et al. (2013) investigated the decolouration of a textile effluent by the white-rot fungi Curvularia lunata and P. chrysosporium in static bioreactors under aerated and non-aerated conditions. The effluent was almost totally decolourised within 10 days under both conditions. However, the effluent treated by P. chrysosporium contained a mutagenic byproduct from indigo biodegradation that was not found in the effluent treated by C. lunata. This indicates that different degradation pathways are used by different ligninolytic fungi and that degradation is not always accompanied by detoxification.
Sathian et al. (2013) studied the decolouration of textile wastewater by Pleurotus floridanus in batch culture. After optimisation of different parameters, the fungal treatment achieved 71.2 % decolouration and 80.5 % COD reduction. Furthermore, in studying the ability of the white-rot fungi Coriolus versicolor, P. floridanus, Ganoderma lucidum and T. pubescens to decolourise textile wastewater in pure and mixed cultures, Sathian et al. (2014) found that the combination of P. floridanus, G. lucidum and T. pubescens led to the best results (87.2 % decolouration) and this combination was used subsequently in a sequential batch reactor (SBR). When operating at the optimised conditions, a decolouration percentage of 71.3 % and a COD reduction of 79.4 % could be obtained.
Choi et al. (2014) investigated the ability of the white-rot fungi B. adusta, Ceriporia lacerata, Phanerochaete calotricha and Porostereum spadiceum to decolourise an untreated textile effluent from a WWTP. They found that only B. adusta was able to decolourise the effluent significantly (71–92 % in 3 weeks). In addition, wastewater toxicity decreased after fungal B. adusta treatment. These results highlight again the different degrading abilities of different fungal species. Ma et al. (2014) reported that Ganoderma sp. En3, a white-rot fungus isolated from a forest in China, was able to decolourise indigo jean dyeing wastewater from a textile factory up to 85.1 % in 8 days.
4.3 Olive Mills
Cerrone et al. (2011) evaluated the white-rot fungi Panus tigrinus, Funalia trogii and T. versicolor to treat olive washing wastewater (OWW) and found that T. versicolor performed well, reducing colour, COD and phenols by 60, 72 and 87 %, respectively, in 216 h. Also, only this fungus grew well in a bubble-column bioreactor (working volume 1 L) and the treatment of OWW in continuous operation reduced colour, COD and phenols by 65, 73 and 89 %, respectively, after 192 h.
Ntougias et al. (2012) studied the treatment of olive mill wastewater (OMW) by different strains belonging to the Ganoderma and Pleurotus genera and found that the Ganoderma spp removed 40–46 % colour and 64–67 % phenolics and the Pleurotus spp removed 60–65 % colour and 74–81 % phenolics within 20 incubation days. This indicates that different fungal species exhibit different degrading abilities.
Olivieri et al. (2012) studied the removal of polyphenols in raw OMW by P. ostreatus under controlled non-sterile conditions in flasks and in an internal loop airlift bioreactor (ILAB) operating in batch with biomass recycling and in continuous culture. Biomass recycling with nutrient addition was the most effective configuration, removing 42–68 % of polyphenols for 5 cycles. The continuous treatment in the ILAB was effectively performed provided that OMW was previously aerated to avoid oxygen consumption by endogenous micro-organisms.
4.4 Wastewater from Other Sources
Strong (2010) studied the treatment of Amarula distillery wastewater by T. pubescens, Ceriporiopsis subvermispora, Pycnoporus cinnabarinus and P. chrysosporium. T. pubescens was found to be the most efficient fungus in phenolic removal (86 %) followed by P. cinnabariunus (69 %) and C. subvermispora (57 %) within 2 cultivation days. However, P. chrysosporium removed less than 40 % of the phenolics for the same time period. In addition, T. pubescens was also very effective in removing colour and reducing COD. Therefore, this study showed the possibility to treat an effluent containing high COD and high phenolic concentration using the white-rot fungus T. pubescens.
Gomathi et al. (2012) reported high decolouration (83 % in 96 h) of a pulp and paper mill effluent by P. chrysosporium entrapped in calcium alginate when 1 % sucrose and 1 % ammonium chloride were added to the effluent.
Palli et al. (2014) assessed the ability of P. ostreatus to remove 2-naphthalenesulfonic acid polymers (2-NSAP) from petrochemical wastewater. In the presence of an adequate carbon source, the fungus was able to remove about 70 % of the oligomers in 40 days, from which about 20–24 % was adsorbed by the fungal biomass. Furthermore, respirometric tests showed a considerable increase of the BOD/COD ratio (from 9 % up to 57 %) after the fungal treatment which confirmed that the fungus did not mineralise the NSAP but increased their biodegradability.
5 Concluding Remarks
WRF hold an enormous potential for the biodegradation of a great variety of xenobiotic compounds due to the secretion of enzymatic complexes with broad substrate specificity. Different WRF show different biodegrading abilities for different xenobiotic compounds mainly due to their different physiology, culture and/or environmental conditions and nature of enzymes secreted. Also, the characteristics of the ligninolytic enzymes from different WRF sources differ considerably.
Despite the promising results reported so far, in order to assess the true technical potential of WRF to biodegrade xenobiotics, more studies under real industrial conditions are needed. However, most studies using real wastewater were performed required some pre-conditioning of wastewater (dilution, pH adjustment, sterilisation, addition of nutrients).
Detailed characterisation of the intermediates and metabolites produced during biodegradation as well as toxicity tests should also be carried out to measure the detoxification of the fungal treated wastewater and prevent accumulation of toxic byproducts. Although some studies regarding the metabolic pathway of xenobiotic degradation by WRF have been performed there is still a gap in the degradation mechanisms of xenobiotics by WRF and their ligninolytic enzymes.
Notes
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Additional information on treatment of dye using fungi is presented in Chap. 4—Application of biosorption and biodegradation function of fungi in wastewater and sludge treatment.
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Rodríguez-Couto, S. (2016). Potential of White-Rot Fungi to Treat Xenobiotic-Containing Wastewater. In: Purchase, D. (eds) Fungal Applications in Sustainable Environmental Biotechnology. Fungal Biology. Springer, Cham. https://doi.org/10.1007/978-3-319-42852-9_5
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