Abstract
Undoubtedly soil is a vital element of life; however in the last two decades or so, soil pollution is becoming a crucial environmental problem which might be harmful to human health and the productivity of soil and ecosystem. The reasons mostly are because of human activities, for example, growing industrialization and rapid development. In the previous 20 years, attempts have been made to use plants to eliminate both natural and chemical contaminants from the environment, mainly from the soil. Phytoremediation is a process of microbial removal of contaminants from soils, deposits, sub-surface water, and surface water creating comparatively less toxic products. An enormous number of compounds from microscopic organisms, growths, and plants have been accounted for to be associated with the biodegradation of harmful natural poisons. These microorganisms incorporate biodegradative microscopic organisms, plant development advancing microbes, and microscopic organisms that secrete enzymes to encourage phytoremediation by different methods. An outline of bacterially helped phytoremediation is given to both natural and metallic contaminants, which might develop the advanced bioprocess technology to lower toxic pollutants. This chapter will unfold the process of microbial enzyme-mediated biodegradation and would also recommend their application and suggestions needed to get better the limitations of their use.
Access provided by Autonomous University of Puebla. Download chapter PDF
Similar content being viewed by others
Keywords
1 Introduction
Due to the dramatic increase in toxic products from various human activities, it has become an important challenge to control environmental pollution. Among them, the major increase in recent years has been soil pollution which might harm human health, crop quality, agriculture, and the climate (Conesa et al. 2012). One of the prominent reasons for soil pollution is due to human activities. The common strategies to remove toxic pollutants from contaminated soils and groundwater are often expensive, labor exhaustive, and not cost-efficient. There are several strategies to remove toxic substances from soil and groundwater. Phytoremediation can be one of these strategies to remove toxic substances from our environment. The plant organism and related microbial networks can be viewed as a daylight-driven hotspot for the turnover of natural, synthetic substances. In such conditions, the destiny of a compound won’t just rely upon its inborn auxiliary soundness toward biochemical responses and its bioavailability yet additionally on the practical viability and solidness of common microbial networks as fundamental drivers of characteristic weakening of synthetic concoctions. Late research exhibits that collaborations among plants and microorganisms are significant for the biotransformation of natural, synthetic concoctions, for different procedures influencing the bioavailability of such mixes, and for the dependability of the affected biological system. Persistent natural poisons (POPs) and overwhelming metals, are considered as the most significant compound families that result in soil contamination (Belden et al. 2004; Xia et al. 2009). Due to the usage of insecticides against pests and mosquitoes, DDT has been collected in soil and river sediments (Lunney et al. 2004). The most common heavy metal pollution in soils is cadmium which is toxic to organisms. Low amount of Cd and DDT may influence the thickness of bone and increase the danger of vertebral breakage (Rignell-Hydbom et al. 2009). Bioremediation can convert pollutants to nonhazardous components enzymatically. However, the contaminant detoxification cycle can only continue if the conditions are suitable for the microorganism’s growth and movement. Several bacteria complicate the process of eliminating organic contaminants, which rely mainly on the intracellular and extracellular enzymes (Madadi and Abbas 2017). Agricultural drainage and industrial release can be managed by rhizofiltration (Yadav et al. 2011; Yan-de et al. 2007). There can be approximately 275 hazardous substances that cause a threat to human health (Bernard 2010). The top 10 most “priority substances” are presented in Table 22.1. To circumvent the harmful effect of these hazardous compounds, several methodologies have been proposed to lower them from the soil. These techniques mainly incorporate the expulsion of soil to landfill locales or mainly physical methods. Such methods are quick but not cost-effective and may pose a danger to physical, chemical, and biological properties of soil. Moreover, the elimination of toxic substances from the atmosphere may be classified by the various groups and forms of these chemicals. The soil can, for example, be polluted with metals, toxic inorganic compounds, or various organic compounds. Metals include cadmium, cobalt, copper, chromium, lead, zinc, selenium, nickel, or mercury, among others. Other inorganic mixtures could include nitrate, arsenic, sodium, alkali, or phosphate. Uranium, cesium, or strontium can be radioactive compounds. Chlorinated solvents such as trichloroethylene may form organic compounds: explosives like trinitrotoluene (TNT) and 1,3,5-trinitro-1,3,5-hexahydrotriazine (RDX). Certain constituents include numerous petroleum hydrocarbons such as benzene, toluene, and xylene (BTX), polycyclic aromatic hydrocarbons (PAHs), and pesticides such as atrazine and bentazone.
2 Importance of Phytoremediation
Phytoremediation, a system that utilizes plants to corrupt, balance out, and additionally expel soil pollutants, has been broadly explored. Rhizoremediation, a specific kind of phytoremediation which includes the plants and their related rhizosphere microorganisms, can happen normally/generally or can be impelled through intentionally presenting explicit organisms. In stress condition, such microbes can act as degraders and encourage plant growth (Gerhardt et al. 2009; Ahamd et al. 2019). Whereas certain natural compounds may be metabolized (i.e., remediated) by bacteria that can be contained in or adjacent to the soil, without plants, this technique is usually moderate and incompetent due to the relatively limited number of decaying microorganisms throughout the soil (Brookes and McGrath 1984). In another way, the use of plants for the remediation of polluted soils, i.e., phytoremediation, is a technically safe, effective, and moderately modest technology that is likely to be readily adopted by the applicable accessible. Soil microorganisms which are in close contact with plant roots may often promote metal phytoextraction (Shilev et al. 2001).
Phytoremediation has improved plant biotechnological approaches. The transgenic plants have more potential for productivity and are perfect and modest with economic bioremediation innovations which are highly encouraging; with few difficulties remain. Phytoremediation is a promising innovation that utilizes plants to debase, absorb, use, or detoxify metals, hydrocarbons, pesticides, and chlorinated solvents.
3 Merits and Demerits
The various merits of bioremediation are enlisted below:
-
1.
It is conceivable as well as freely acknowledged (Marmiroli and McCutcheon 2004; Watt 2007).
-
2.
Can be moderated by solar energy (Ali et al. 2013).
-
3.
It can work together with organic compounds (Cofield et al. 2007).
-
4.
Not expensive (Cornish et al. 1995).
-
5.
On the plantation side, it reduces soil erosion by wind and water (Cunningham et al. 1995).
-
6.
The metal-rich plant residue is reusable.
-
7.
Water and airborne secondary diseases can be eliminated (Lili and Hui 2007).
Although some demerits are listed here below:
-
1.
Due to the short root system of plants, only sub-surface contaminants can be cleaned up (Padmavathiamma and Li 2007).
-
2.
Trees with longer root system can tidy up somewhat more profound pollution than plants, regularly 10–15 ft., yet fail to clean up intense springs moving forward without any more structure work.
-
3.
These plants which have absorbed toxic pollutants can be a threat to the food chain (Arthur et al. 2000).
-
4.
It requires large space and intense care.
-
5.
Some volatile compound from groundwater can be a problem for air pollution too (Sakakibara et al. 2010).
-
6.
Plants used in the remedy become inedible (Mejáre and Bülow 2001).
-
7.
It takes a lot of time to clean up a small space (Stomp et al. 1994).
4 Mechanism of Phytoremediation
Rhizoremediation is a kind of phytoremediation which helps clean up pollutants from the low to moderate pollution level suitable mainly for both small and large sites (Zhuang et al. 2007) (Fig. 22.1).
The rhizosphere is identified with the root system and encompassing the surface and sub-surface soil. The three zones of rhizosphere are as follows:
-
1.
Endorhizosphere : Some root tissue part (endodermis and cortical layers).
-
2.
Rhizoplane : The root surface area where microorganisms associate with soil. It consists of three layers (epidermis, cortex core, and layer of polysaccharides).
-
3.
Ectorhizosphere : Zone in which the roots adjoin the soil surface.
-
4.
For expulsion of corruption forms, plants are engaged with several instruments to evacuate both natural and chemical toxic materials from contaminated situations (Rao et al. 2010).
Heavy metals pose a grave danger to human and animal health. Heavy metal accumulation in bodies of plants and animals happens after it enters the food chain (Haris et al. 2021; Dhankar et al. 2020; Hussain et al. 2021). They pose a threat because of the mutagenic ability of some heavy metals as it damages the DNA (Mohamed 2011; Mohamed et al. 2016; Akladious and Mohamed 2017). That is why the removal of these heavy metals for soil and several in situ and ex situ technologies that are used for this purpose is required. Phytoremediation is an environmentally sustainable technique, cost-effective for cleaning metal-polluted soils. In their growth, plants embrace various processes to lower the metal in soils without any antagonistic impacts (Table 22.2).
Phytostabilization, phytoextraction, and phytovolatilization are the main mechanisms, but here we are giving a brief explanation of phytovolatilization.
4.1 Phytovolatilization
Changing of toxic heavy metals such as Hg, Se, and As into less dangerous, unforeseeable structures released into the atmosphere by plants is called phytovolatilization (Malik and Biswas 2012). The reasonable utilization of phytovolatilization is addressed because of the arrival of harmful unstable mixes to the environment with a hazard evaluation ought to be finished (Marques et al. 2009). Although some reported that these volatile compounds pose no threat to the environment, they mostly become diluted and dispersed (Meagher et al. 2000). Arsenic effectively volatilized into a mixture of arsenic mixes , arsenite, and arsenate (Sakakibara et al. 2010).
4.2 Phytoextraction
This is the mechanism in which foliage plants remove heavy metals from soil. The heavy metals in the soils are absorbed, transported, and accumulated in the plant’s parts above the ground. These plant parts are then collected and safely handled to either dispose of the heavy metals or recycle them. These plants must have the capability of both metal tolerance and fast-growing to produce high biomass (Fig. 22.2).
5 Role of Microbial Enzyme in Phytoremediation
Table 22.3 shows the role of the plant and microbial enzymes in the biodegradation of organic compounds. Microbial sources are identified as (B) the bacterium or (F) the fungus.
Microbial enzymes play an essential role in the removal of environmentally toxic substances that are dispersed in the environment due to human activities. Various catalysts, e.g., oxygenases, are significant chemicals as they are fundamentally associated with the underlying procedure of corruption and reduce and debase the fragrant mixes. They reduce the toxic substances into the substrates. Two major oxygenases are monooxygenases (add one molecule of oxygen) and dioxygenases (add two molecules of oxygen) (Arora et al. 2010; Karigar and Rao 2011).
5.1 Microbial Oxidoreductases
Oxidoreductases used to remove the harmful effect of organic compounds by various bacteria, fungi, and plants (Husain 2006; Karigar and Rao 2011) by oxidative association. Microbes derive energy using biochemical reactions mediated by these enzymes in order to cleave chemical bonds and assist in electron transfer from a reduced organic (donor) substrate to another chemical (acceptor) compound. The pollutants are gradually oxidized to harmless compounds during these oxidation-reduction reactions (Karigar and Rao 2011). Oxidoreductases are involved in humidifying various phenolic substances which are formed in a soil environment from the decomposition of lignin. In the same way, oxidoreductases can also detoxify toxic xenobiotics by polymerization, such as phenolic or anilinic compounds, copolymerization, or binding of humic substances with certain substrates (Park et al. 2006). Microbial enzymes were used to decolorate and degrade azo dyes (Husain 2006). In the energy production process, bacteria consume electrons from organic compounds and use radioactive metal as the final electron acceptor. Eventually, the precipitant can be the product of bacterial redox reactions that reduce metals (Leung 2004).
The most common recalcitrant waste are chlorinated phenolic compounds that are present in the paper and pulp-processed effluents. Such compounds are formed during the process of pulp bleaching upon partial degradation of lignin. Most fungal organisms are considered appropriate for the removal from polluted habitats of chlorinated phenolic compounds. The filamentous fungal mycelia produce extracellular oxidoreductase enzymes which are released into the natural environment and are more effective in penetration of soil pollution than bacteria (Rubilar et al. 2008). Plants can decontaminate water polluted with phenolic compounds using enzymes which are produced and released from their roots. Phytoremediation of chemical contaminants has generally concentrated on three groups of compounds: chlorinated solvents, explosives, and hydrocarbons for petroleum (Duran and Esposito 2000).
5.1.1 Microbial Oxygenases
Oxygenases are a member of the enzyme class called oxidoreductase, FAD/NADH/NADPH used as cosubstrate to transfer oxygen from O2. Oxygenases are classified into two classes, depending on the number of oxygen atoms used for oxygenation: monooxygenases and dioxygenases. They play a vital position in the chemical process of an organic compound by increasing their reactivity or water solubility or by causing cleavage of the aromatic ring. O2 atoms are normally incorporated by oxygenase into the organic molecule, leading to cleavage of the aromatic ring (Arora et al. 2009).
5.1.2 Microbial Monooxygenases
The addition of a singlet oxygen molecule is achieved in the substrate by using monooxygenase enzyme. The cofactors used can be divided into two subgroups: (1) monooxygenases based on flavin and (2) monooxygenases P450 (Bacillus megaterium). The first subgroup prothetic group is flavin that is activated by using the coenzymes (NADP or NADPH), and the second subgroup includes heme. Monooxygenases are initiated and increase the rate of a chemical reaction activity in the phytoremediation. The other enzymes are cofactor-autonomous that play out their action with the subatomic oxygen as it were. Numerous procedures including desulfurization, denitrification, nitrification, ammonization, dehalogenation, shift, hydroxylation, and fragrant and aliphatic biodegradation are regulated by catalyst monooxygenases (Lock et al. 2017; Sirajuddin and Rosenzweig 2017; Syed et al. 2013).
5.1.3 Microbial Dioxygenases
Those are farraginous systems of enzymes which add molecular oxygen into the substrate. They degenerate the aromatic complex which raises a serious damage to the environment. This can be divided into two subclasses, depending on the enzyme’s mode of activity: hydroxylation and cleavage dioxygenases. The hydroxylation enzyme catalyzes the expansion into the substrate of two oxygen atoms, while the cleavage enzyme catalyzes an aromatic ring usually carrying at least two or more groups of hydroxyls. The dioxygenase cleavage is further divided into two groups: intradiol and an extradiol. Such enzymes are concerned with environmental degradation of aromatic molecules. They are soil bacteria that are involved in the transformation process by converting aromatic precursors into aliphatic products (Al-Hawash et al. 2018; Fulekar 2017; Muthukamalam et al. 2017; Xenia and Refugio 2016).
5.2 Microbial Peroxidases
Peroxidases (EC 1.11.1.7) are disseminated widely in the environment. Plants and microorganisms are different sources that produce peroxidase enzymes. These microbial enzymes include degradation of pollution, raw materials, food and paper industries, degradation of textile dyes, lignin degradation paper/pulp industry, decoloration of the dye, sewage treatment, and animal feedstock and as biosensors. For plants, they help in the production of lignin, the formation of cell walls, auxin metabolism, cell elongation, and channel protection. Also, they are subdivided into both heme and nonheme proteins. Furthermore, heme peroxidases in the prokaryotes and the eukaryotes are classified into three groups based on contrast (Bansal and Kanwar 2013; Falade et al. 2016).
5.2.1 Microbial Lignin Peroxidases (Lip)
During secondary metabolism, the white-rot fungus produces lignin peroxidases. Having the existence of H2O2 and mediator like veratryl alcohol LiP, lignin and other phenolic compounds are depleted. During the reaction, H2O2 is reduced to H2O by obtaining electron from LiP (which is oxidized by itself) (Ten Have and Teunissen 2001). Lignin peroxidase (LiP) plays an essential function in the biodegradation of plant cell walls’ lignin constituents (Piontek et al. 2011).
5.2.2 Microbial Manganese Peroxidases (MnP)
MnP is produced from basidiomycete fungus that caused lignin-degrading and oxidation of different phenolic compounds (Ten Have and Teunissen 2001), in which a multistep reaction oxidizes Mn2+ to the oxidant Mn3+. Mn2+ stirs up the output of MnP and plays an important role as a substrate for MnP.
5.2.3 Microbial Versatile Peroxidases (VP)
VP enzymes are capable of oxidizing Mn2+ and phenolic aromatic substrates (Ruiz-Duenas et al. 2007). In the absence of manganese, VP has an unusually high specificity of substrates and a tendency to oxidize substrates compared to other peroxidases and plays important role in the bioremediation (Tsukihara et al. 2006).
5.3 Microbial Laccases
Laccases belong to multicopper oxidase family that are produced by certain plants and microorganisms which cause oxidation of phenolic and aromatic compounds while at the same time convert the molecular oxygen to water (Nigam 2013). Most microorganisms contain intracellular and extracellular laccases capable of catalyzing the oxidation of polyphenols, polyamines, and lignins (Rodrıguez Couto and Toca Herrera 2006) and repolymerization to humic materials (Viswanath et al. 2014). The production of laccase is depending on the concentrations of nitrogen in the fungi. Typically, the high concentrations of nitrogen are required to obtain large quantities of laccase (Viswanath et al. 2014).
5.4 Microbial Lipases
Lipase breaks down lipids which are produced by a wide array of microorganisms, bacteria, actinomycetes, and plants. Recent research has found that lipase is strongly related to the soil’s organic pollutants. These microbial lipases are more flexible due to their active industrial use. Lipase enzymes can catalyze different reactions, including hydrolysis, interesterification, esterification, alcoholysis, and aminolysis (Prasad and Manjunath 2011). The lipase activity controlled the dramatic reduction of the total hydrocarbons of polluted soils and plays an important role as bioremediation of oil spills (Riffaldi et al. 2006; Sharma et al. 2011; Okino-Delgado et al., 2017). Lipases cause hydrolysis of triacylglycerol into glycerol and free fatty acids. Lipases were categorized into two groups based on criteria such as (a) enhanced enzyme activity once the triglycerides form an emulsion and (b) protein (lid)-looped lipases that cover the active site (Sharma et al. 2011).
5.5 Microbial Cellulases
Cellulases now provide the ability to turn cellulose waste materials into foods to overcome the increase in the population (Bennet et al. 2002). Some organisms formed a bound cell, associated cell envelope, and some extracellular cellulases. Some bacteria and fungi have shown that extracellular cellulases, hemicellulases, and pectinases are expressed constitutively at very low levels (Adriano-Anaya et al. 2005). Cellulose is broken down by cellulases during enzymatic hydrolysis to reduce the amount of sugar that can be fermented to ethanol by yeasts or bacteria (Sun and Cheng 2002). Cellulases extract microfibrils of cellulose that form during washing and the use of cotton-based clothes. This is often known in the textile industry as the brightening of colors and softening of fabrics. Bacillus strains produced alkaline cellulases, and Trichoderma and Humicola fungi produced neutral and acidic cellulases (Leisola et al. 2006).
5.6 Microbial Proteases
Proteases cause protein material degradation entering the atmosphere like animal mortality and a by-product in other industries such as livestock, fishing, and clothing, as a result of shedding and molting appendages (Beena and Geevarghese 2010). A varied and unique protease is used in the pharmaceutical industry to grow effective medicinal agents. Clostridial collagenase or subtilisin is used for the treatment of burns and wounds in conjunction with wide-spectrum antibiotics (Beena and Geevarghese 2010; Bhunia and Basak 2014).
5.7 Microbial Pullulanase
Several microorganisms such as Klebsiella spp., Bacillus spp., and Geobacillus stearothermophilus are used to produce pullulanases. It is very common in industrial uses due to its specific enzymatic action on pullulan, particularly in the specific connections (α-1,6 linkages), and starch is very essential as bioprocessor for its action (Karigar and Rao 2011; Lee et al. 2017).
5.8 Microbial Amylases
Alpha-amylases are extracellular enzyme that breaks in starch molecules, the α-1,4-glycosidic bond, and produce oligosaccharides, β-amylase, which also breaks the second maltose α-1,4-glycosidic bond and is synthesized in plants and bacteria. Amylases are important enzymes for their specific application in the process of conversion of industrial starch. Such enzymes are especially active on disaccharides (sucrose) and polysaccharides (starch) and are grouped into the glycoside hydrolase community (Singh et al. 2016; Gopinath et al. 2017).
6 Role of Plant Growth-Promoting Rhizobacteria (PGPR) Under Stress
PGPR is used to improve the execution of plants through different components, such as the production of precious hormones, the upgrading of plant nutrition status, and the decrease of the harm associated with the environment. The association among plants and PGPR happens to specific enthusiasm for situations that are described by imperfect developing conditions like high or low temperatures, dry spell, soil saltiness, and supplement shortage (plant development under stress) (Hussain et al. 57,58,c; Mandal et al. 2021). Primary expects to discuss the fundamental mechanisms of interaction between PGPR and plants and will focus on how PGPR can reduce abiotic stress damage in plants, which are essential crops for human diet (Hussain et al. 2020).
Abiotic stress thusly influences numerous plants like vegetables. In any case, vegetables, which are plants developed for their vegetative parts, are gradually affected by abiotic stress when compared with the family of grasses. The abiotic stress reduces the climate for the vegetable ranch and thus results in reduced crop yields. PGPR are beneficial to soil microscopic organisms suitable for stimulating plant physical substance and natural changes (Mohamed and Gomaa 2012).
Wholesome status, physical and biological properties of the soil, continuously changing environment, and other abiotic stresses are important drivers for reduced output in agriculture (Gopalakrishnan et al. 2015). Abiotic stresses are the fundamental reason for losses in crop yields and hiking food prices in the world with an increasing population. Attempts are being made to create stress-tolerant vegetables through traditional breeding or transgenic approaches, as multiple genes and metabolic procedures are stress-resilient (Ashraf and Akram 2009). The use of useful has recently become a possible new approach for protecting crops from damage caused by abiotic stress (Palaniyandi et al. 2014; Fatnassi et al. 2015; Wang et al. 2016; Hussain et al. 57,58,c).
6.1 Plant Growth-Promoting Bacteria (Subheading)
Natural exudates discharged through the roots are correlated with PGPR into plants and colonize the root surface and soil in direct contact with the root. The rhizosphere is the region of soil in the vicinity of plant roots in which chemistry and microbiology are influenced by their growth, respiration, and nutrient exchange which is illustrated in Fig. 22.3 (Smalla et al. 2006; Martino 2019), whereas the extracellular root surface has called been the rhizoplane (Foster 1986). Exudates discharged from plant roots pull microorganisms in the soil that can colonize rhizosphere or potentially plant tissue. Here, they offer the plant various helpful mixes in the supplement trade, primarily photosynthesis (Kawasaki et al. 2016).
Remarkably, through alternating environmental factors, plants may indirectly influence rhizosphere colonization. For example, increases in pH levels are through the absorption of ions and reduction of O2 and H2O levels caused by root respiration and water supply (Philippot et al. 2013). Two different studies (Bouffaud et al. 2012; Peiffer et al. 2013) showed how various genotypes of related plant species can be linked with different bacterial communities of the rhizosphere. Exudates differ in the different parts of the roots, the formative phases of the plant, and the conditions for growth (Zahar Haichar et al. 2008). This implies that after some time and space, a similar plant will link with a large number of different soil bacterial strains (Compant et al. 2010). Several bacterial species can spread from the endodermis of roots , enter, and colonize other stem organs (Compant et al. 2005; Dimkpa et al. 2009).
6.2 Plant Growth Promotion is driven by Rhizobacteria (Subheading)
Interactions with PGPR can lead to increased plant productivity, mineral contents, and plant growth. A portion of the primary benefits obtained by plants due to treatment with PGPB are increased root development, offering better protection against temperature and osmotic pressure, soil poisons, vermin, and pathogens (Lugtenberg and Kamilova 2009).
6.3 Hormone-Related Mechanisms (Subheading)
PGPB produced indole-3-acetic acid (IAA) which caused enhancement of plant growth, cell elongation and differentiation, and stimulating lateral root growth (Dimkpa et al. 2009). IAA will roundly boost the plant’s dietary status by extending root progression (explicitly sidelong roots), allowing the plant to reach a higher soil substratum, a main feature of nutrients with low mobility such as phosphorus (Wittenmayer and Merbach 2005). Gibberellins (GAs) are considered to play an important role in the promotion of plant development and produced by PGPR (Bastian et al. 1998). These diterpene hormones are present in plants, directing key procedures, for example, germination of the seed, elongation of the stem, expansion of the leaves, root growth, and fullness of root hair (Bottini et al. 2004; Yamaguchi 2008). The function of gibberellins in the reaction of grains to stresses fluctuates relying upon the stress type (Iqbal et al. 2011). The ethylene biosynthetic precursor is ACC, a hormone that is usually found in plants and increased under environmental stress. Ethylene is required for critical procedures such as tissue differentiation, root growth, flowering, grain production, senescence, and abscission; but it may suppress plant performance in case of overproduction (Saleem et al. 2007; Hays et al. 2007). Abscisic acid (ABA) is a plant hormone and increased under abiotic stress (Fahad et al. 2015). ABA is naturally engaged with seeds and bud’s torpidity, and ABA imparts the primary biosynthetic strides to cytokinins, a phytohormone class that regularly assumes an adversarial role to ABA. Under salt stress condition, the plant biosynthesis of ABA which moved to leaves and caused stomatal closure, reduced transpiration and water loss (Xing et al. 2004), and reduced photosynthesis due to the CO2 emission into the leaves (Yang et al. 2009; Barnawal et al. 2017; Shahzad et al. 2017).
6.4 Role of PGPB in Nutrient Stress (Subheading)
Comparatively, the use of PGPB as a biofertilizer has been found to improve plant nutrient usage and promote plant production (Calvo et al. 2015; Çakmakçi 2016). Once added, these inoculants improve plant growth and development or protect plants against pests and diseases (Ramjegathesh et al. 2013). Several microbial inoculants have been used as biofertilizers in this consideration which supply plants with nutrients such as N, P, K, S, and Fe. The more widely used genera as biocontrol agents are Pseudomonas (Tewari and Arora 2015), Bacillus (Alavo et al. 2015; Hussain and Khan 2020a, b), Burkholderia (Pinedo et al. 2015), Agrobacterium (Bazzi et al. 2015), and Streptomyces (Viaene et al. 2016). By production of antibiotics (Prasannakumar et al. 2015) and siderophores (Patel et al. 2016), by induction of systemic resistance (Zebelo et al. 2016), or any other mechanism, these organisms reduced plant disease.
7 Role of Biotechnology in Phytoremediation
Heavy metal pollution poses a global threat. Pollution from heavy metals remains a global threat. Contamination of heavy metals is an effect on the quality of soil and water as well as to human and animal health since they will pile up in the food chain (El-Beltagi et al. 2020; Moustafa-Farag et al. 2020; Sofy et al. 2020). Phytoremediation is a particular method of bioremediation. It is a characteristic natural procedure of corruption of xenobiotic and stubborn mixes liable for ecological contamination. In this, genetically engineered plants are used which directly uptake the pollutants from the soil (Macek et al. 2000). The word phyto means “plant”; that’s why the remediation is mediated by the plant system (Sonali 2011). Phytoremediation includes numerous procedures which are done by the plant during their development on the sullied site. Thus, the pollutants are treated by plants utilizing of these responses like phytoextraction, phytostabilization, phytotransformation, phytostimulation, and phytovolatilization (Sonali 2011). Various contaminations have various destinies in plant-substrate frameworks, so they have diverse rate-restricting variables for phytoremediation that may focus on utilizing hereditary designing. Biotechnology shows us the chance to move hyper-aggregator phenotypes into quickly developing large biomass plants that can be exceptionally successful in phytoremediation (Rupali and Dibyengi 2004; Maurya et al. 2020).
A perfect phytoremediator characterizes more resistance for contamination, the capacity to either debase or assemble the impurities at an elevated amount in the biomass, broad root frameworks, the ability to assimilate a lot of water from the soil, and also quick development rates and significant levels of biomass (Cherian and Oliveira 2005). Albeit a few species can endure and develop in some defiled destinations, these species regularly become gradual, produce extremely low degrees of biomass, and are adjusted to quite certain natural conditions. What’s more, trees which have broad root frameworks, high biomass, and low horticultural sources of info necessities endure poisons ineffectively and don’t gather them. Traditional plants neglect the requirements for fortunate phytoremediators (Gratão and Braz 2005). The healing limit of plants can be essentially improved by hereditary manipulation and plant transformation technologies (Kraomer 2005). Presentation of novel qualities for the take-up and aggregation of contaminations into high biomass plants is demonstrating a fruitful procedure for the advancement of improved phytoremediators (Martanez et al. 2006). This reviews a portion of the exploration endeavors in this field and highlights future difficulties.
8 Phytoremediation Mechanism of Cd Adopted by Soil Plants
Remediation of Cd-sullied soil is a considerable issue far and wide, and it turned out to be progressively huge because of the exchange of Cd in higher trophic degrees in a natural way of life. Cd hyperaccumulators are exceptionally compelling a direct result of their capacity to endure and take up noteworthy measures of overwhelming metal from soils. Plants of various species have various capacities to hyperaccumulate Cd. Cd has low affinities with soil ligands due to its versatile nature and henceforth is effortlessly extricated by attaches and further shipped to other flying bits of the plant. The factors responsible for plant-based remediation of Cd are pH, temperature, media concentration, and concentration of other than Cd components (Mahajan and Kausha 2018; Dhankar et al. 2020). The phytoremediation process for extracting Cd in soil plants is shown in Fig. 22.4.
9 Conclusion and Future Prospectus
Metal pollution of soils is a common issue in various regions across the globe with varying intensities and magnitudes. Several remediation techniques for each bearing a broad variety of benefits and demerits have already been explored in depth elsewhere. Phytoremediation across all types of remediation is considered environmentally friendly and low cost. Around the same time, the introduction of commercial-scale phytoremediation technology requires careful consideration of the costly and time-consuming problems and the fate of the plants being used. It has been recognized that a variety of plants are prepared to accumulate high metal centralizations in their ethereal parts, keep the metals in roots or balance the metals in soils, eventually restrict their translocation to the shoots, and remove the metals from the dirt by amalgamating volatile mixtures. Growing of the above technologies includes different mechanisms that are already discussed in depth. The decision to use innovation in phytoremediation to remediate metal-defiled premises is based on soil type, metal content, degree of tainting, and natural upsetting effect. An understanding of the different processes involved will enhance decision-making when implementing a specific technology. Phytoextraction is commonly used by various advancements in phytoremediation, and a wide variety of hyperaccumulator plants fit for gathering high metal centralizations have been described. Distinguishing evidence and accepting qualities responsible for hyperaccumulation in hyperaccumulator plants into those plants fit for metal accumulation, and high biomass production may disturb the progress in phytoremediation. It requires a deeper understanding of the molecular basis of the pathways involved in pollutant degradation. Further analysis and disclosure of qualities appropriate for phytoremediation are important. Innovation in phytoremediation is still at an early stage of development, and field trials of transgenic plants for phytoremediation are unusually limited. Biosafety concerns should be properly answered, and protocols should be developed to avoid quality streams becoming wild species. Innovations in phytoremediation are currently accessible for only a limited subset of pollutants, and several destinations are being debased with a few synthetic substances. In this way, phytoremediators with various stacked qualities should be designed to satisfy the prerequisites of specific destinations. Conflict of Interest: None of the Authors have any conflict of interest.
References
Adriano-Anaya M, Salvador-Figueroa M, Ocampo JA, Garcıa-Romera I (2005) Plant cell-wall degrading hydrolytic enzymes of Gluconacetobacter diazotrophicus. Symbiosis 40(3):151–156
Ahamd G, Nishat Y, Haris M, Danish M, Hussain T (2019) Efficiency of soil, plant and microbes for the healthy plant immunity and sustainable agricultural system. In: Varma A, Tripathi S, Prasad R (eds) Plant-microbe interface edit. Springer, Cham. https://doi.org/10.1007/978-3-030-19831-2-15
Akladious SA, Mohamed HI (2017) Physiological role of exogenous nitric oxide in improving performance, yield and some biochemical aspects of sunflower plant under zinc stress. Acta Biol Hungarica 68(1):101–114
Alavo TBC, Boukari S, Fayalo DG, Bochow H (2015) Cotton fertilization using PGPR Bacillus amyloliquefaciensFZB42 and compost: impact on insect density and cotton yield in NorthBenin, West Africa. Cogent Food Agric 1(1):1063829
Al-Hawash AB, Alkooranee JT, Abbood HA, Zhang J, Sun J, Zhang X, Ma F (2018) Isolation and characterization of two crude oil-degrading fungi strains from Rumaila oil field Iraq. Biotechnol Rep 17:104–109
Ali H, Khan E, Sajad MA (2013) Phytoremediation of heavy metals—concepts and applications. Chemosphere 91:869–881
Anjum NA, Ahmad I, Mohmood I, Pacheco M, Duarte AC, Pereira E, Umar S, Ahmad A, Khan NA, Iqbal M (2012) Modulation of glutathione and its related enzymes in plants’ responses to toxic metals and metalloids—a review. Environ Exp Bot 75:307–324
Arora PK, Kumar M, Chauhan A, Raghava GP, Jain RK (2009) OxDBase: a database of oxygenases involved in Biodegradation. BMC Res Notes 2:67
Arora PK, Srivastava A, Singh VP (2010) Application of monooxygenases in dehalogenation, desulphurization, denitrification and hydroxylation of aromatic compounds. J Bioremed Biodegr 1:1–8
Arthur E, Crews H, Morgan C (2000) Optimizing plant genetic strategies for minimizing environmental contamination in the food chain: report on the MAFF funded joint JIC/CSL workshop held at the John Innes Centre, October 21–23, 1998. Int J Phytoremediation 2:1–21
Ashraf M, Akram NA (2009) Improving salinity tolerance of plants through conventional breeding and genetic engineering: an analytical comparison. Biotechnol Adv 27:744–752
Bansal N, Kanwar SS (2013) Peroxidase(s) in environment protection. Sci World J. https://doi.org/10.1155/2013/714639
Barber EA, Liu Z, Smith SR (2020) Organic contaminant biodegradation by oxidoreductase enzymes in wastewater treatment. Microorganisms 8:122. https://doi.org/10.3390/microorganisms8010122
Barnawal D, Bharti N, Pandey SS, Pandey A, Chanotiya CS, Kalra A (2017) Plant growth-promoting rhizobacteria enhance wheat salt and drought stress tolerance by altering endogenous phytohormone levels and TaCTR1/TaDREB2 expression. Physiol Plant 161(4):502–514
Bastian F, Cohen A, Piccoli P, Luna V, Baraldi R, Bottini R (1998) Production of indole-3-acetic acid and gibberellins A1 and A3 by Acetobacter diazotrophicus and Herbaspirillum seropedicae in chemically-defined culture media. Plant Growth Regul 24(1):7–11
Bazzi C, Alexandrova M, Stefani E, Anaclerio F, Burr TJ (2015) Biological control of Agrobacterium vitis using non-tumorigenic agrobacteria. VITIS-J Grapevine Res 38:31
Beena AK, Geevarghese PI (2010) A solvent tolerant thermostable protease from a psychrotrophic isolate obtained from pasteurized milk. Devel Microbiol Mol Biol 1:113–119
Belden JB, Clark BW, Phillips TA, Henderson KL, Arthur EL, Coats JR (2004) Detoxification of pesticide residues in soil using phytoremediation. Pestic Decontam Detox 863:155–167
Bennet JW, Wunch KG, Faison BD (2002) Use of fungi biodegradation. ASM Press, Washington, DC
Bernard RG (2010) Using soil bacteria to facilitate phytoremediation. Biotechnol Adv 28:367–374
Bhunia B, Basak B (2014) A review on application of microbial protease in bioremediation. In: Pramanik K (ed) Industrial and environmental biotechnology. Studium Press (India) Pvt. Ltd., Darya Ganj, pp 217–228
Bottini R, Cassan F, Piccoli P (2004) Gibberellin production by bacteria and its involvement in plant growth promotion and yield increase. Appl Microbiol Biotechnol 65(5):497–503
Bouffaud ML, Kyselková M, Gouesnard B, Grundmann G, Muller D, Moënne-Loccoz Y (2012) Is diversification history of maize influencing selection of soil bacteria by roots? Mol Ecol 21(1):195–206
Brookes PC, McGrath SP (1984) Effect of metal toxicity on the size of the soil microbial biomass. Soil Sci 35:341–346
Caballero A, Lazaro JJ, Ramos JL, Esteve-Nunez A (2005) PnrA, a new nitroreductase family enzyme in the TNT-degrading strain Pseudomonas putida JLR11. Environ Microbiol 7:1211–1219
Cai M, Xun L (2002) Organization and regulation of pentachlorophenol-degrading genes in Sphingobium chlorophenolicum ATCC 39723. J Bacteriol 184:4672–4680
Çakmakçi, Ramazan & Dönmez, Figen & Aydin, Adil & Sahin, Fikrettin (2016) Growth promotion of plants by plant growth-promoting rhizobacteria under greenhouse and two different field soil conditions. Soil Biology and Biochemistry. 38:1482–1487. https://doi.org/10.1016/j.soilbio.2005.09.019
Calvo P, Watts D, Torbert H, Kloepper J (2015) Application of microbial inoculants promote plant growth, increased nutrient uptake and improve root morphology of corn plants. In: American society of agronomy meetings, November, USA
Cherian S, Oliveira MM (2005) Transgenic plants in phytoremediation: recent advances and new possibilities. Environ Sci Technol 39:9377–9390
Cofield N, Banks MK, Schwab AP (2007) Evaluation of hydrophobicity in PAH-contaminated soils during phytoremediation. Environ Pollut 145:60–67
Compant S, Duffy B, Nowak J, Clément C, Barka EA (2005) Use of plant growth-promoting bacteria for biocontrol of plant diseases: principles, mechanisms of action, and future prospects. Appl Environ Microbiol 71(9):4951–4959
Compant S, Clément C, Sessitsch A (2010) Plant growth-promoting bacteria in the rhizo- and endosphere of plants: their role, colonization, mechanisms involved and prospects for utilization. Soil Biol Biochem 42(5):669–678
Conesa HM, Evangelou MW, Robinson BH, Schulin R (2012) A critical view of current state of phytotechnologies to remediate soils: still a promising tool. Sci World J:173–829
Cornish JE, Goldberg WC, Levine RS, Benemann JR (1995) Phytoremediation of soils contaminated with toxic elements and radionuclides. Battelle Press, Columbus
Cunningham SD, Berti WR, Huang JW (1995) Phytoremediation of contaminated soils. Trends Biotechnol 13:393–397
Datta R, Das P, Tappero R, Punamiya P, Elzinga E, Sahi S, Feng H, Kiiskila J, Sarka D (2017) Evidence for exocellular arsenic in fronds of Pteris vittata. Sci Rep 7:2839. https://doi.org/10.1038/s41598-017-03194-x
Dhankar R, Tyagi P, Kamble SS, Gupta D, Hussain T (2020) Advances in fungi: Rejuvenation of polluted sites. Fungi Bio-Prospects in Sustainable Agriculture, Environment and Nano-Technology, Vol-2, Edit by Sharma VK, Shah MP, Parmar S and Kumar A. Elsevier AP U.K. pg 251–275, https://doi.org/10.1016/B978-0-12-821925-6.00012-5. ISBN: 978-0-12-821925-6
Dimkpa C, Wein T, Asch F (2009) Plant-rhizobacteria interactions alleviate abiotic stress conditions. Plant Cell Environ 32(12):1682–1694
Duran N, Esposito E (2000) Potential applications of oxidative enzymes and phenoloxidase-like compounds in wastewater and soil treatment: a review. Appl Catal B 28(2):83–99
El-Beltagi HS, Sofy MR, Aldaej MI, Mohamed HI (2020) Silicon alleviates copper toxicity in flax plants by up-regulating antioxidant defense and secondary metabolites and decreasing oxidative damage. Sustainability 12:4732. https://doi.org/10.3390/su12114732
Fahad S, Hussain S, Bano A, Saud S, Hassan S, Shan D (2015) Potential role of phytohormones and plant growth-promoting rhizobacteria in abiotic stresses: consequences for changing environment. Environ Sci Pollut Res 22(7):4907–4921
Falade AO, Nwodo UU, Iweriebor BC, Green E, Mabinya LV, Okoh AI (2016) Lignin peroxidase functionalities and prospective applications. Microbiol Open. https://doi.org/10.1002/mbo3.394
Fatnassi IC, Chiboub M, Saadani O, Jebara M, Jebara SH (2015) Impact of dual inoculation with Rhizobium and PGPR on growth and antioxidant status of Vicia faba L. under copper stress. C R Biol 338(4):241–254
Fierer N (2017) Embracing the unknown: disentangling the complexities of the soil microbiome. Nat Rev Biotechnol 15(10):1–12
Foster R (1986) The ultrastructure of the rhizoplane and rhizosphere. Annu Rev Phytopathol 24(1):211–234
Fulekar MH (2017) Microbial degradation of petrochemical waste-polycyclic aromatic hydrocarbons. Bioresour Bioprocess 4:28
Gangola S, Sharma A, Bhatt P, Khati P, Chaudhary P (2018) Presence of esterase and laccase in Bacillus subtilis facilitates biodegradation and detoxification of cypermethrin. Sci Rep 8(1):1–11. 481038/s41598-018-31082-5
Gerhardt KE, Huang XD, Glick BR, Greenberg BM (2009) Phytoremediation and rhizoremediation of organic soil contaminants. Potent Chall Plant Sci 176:20–30
Gopalakrishnan S, Sathya A, Vijayabharathi R, Varshney RK, Gowda CL, Krishnamurthy L (2015) Plant growth promoting rhizobia: challenges and opportunities. 3 Biotech 5(4):355–377
Gopinath SCB, Anbu P, Arshad MKM, Lakshmipriya T, Voon CH, Hashim U, Chinni SV (2017) Biotechnological processes in microbial amylase production. BioMed Res Inter 2017:1272193
Gramss G (2013) Potential contributions of oxidoreductases from alfalfa plants to soil enzymology and biotechnology: A review. Nature Science. 169–224
Gratão LP, Braz J (2005) Phytoremediation: green technology for the clean-up of toxic metals in the environment. Plant Physiol 17:53–64
Haris M, Shakeel A, Hussain T, Ahmad G, Ansari MA, Khan A (2021) New trends in removing heavy metals from industrial wastewater through microbes. In: Shah M.P. (eds) Removal of emerging contaminants through microbial processes. Springer, Singapore. https://doi.org/10.1007/978-981-15-5901-3_9
Hays DB, Do JH, Mason RE, Morgan G, Finlayson SA (2007) Heat stress induced ethylene production in developing wheat grains induces kernel abortion and increased maturation in a susceptible cultivar. Plant Sci 172(6):1113–1123
Husain Q (2006) Potential applications of the oxidoreductive enzymes in the decolorization and detoxification of textile and other synthetic dyes from polluted water: a review. Crit Rev Biotechnol 26(4):201–221
Hussain, T, Akhtar, N, Aminedi, R, Danish M, Nishat Y, Patel S (2020) Role of the potent microbial based bioagent and their emerging strategies for the eco-friendly management of Agricultural Phytopathogens. Natural Bioactive Products in Sustainable Agriculture, Edit. by Singh J and Yadav AN. Springer Singapore, pg 45–66, ISBN-978-981-15-3023-4
Hussain K. et al. (2021) Bioremediation of waste gases and polluted soils. In: Panpatte D.G., Jhala Y.K. (eds) Microbial rejuvenation of polluted environment. Microorganisms for sustainability, vol 26. Springer, Singapore. https://doi.org/10.1007/978-981-15-7455-9_5
Hussain T, Khan AA (2020a) Bacillus subtilis T-AMU and its antifungal activity against Potato black scurf caused by Rhizoctonia solani. Biocatal Agri Biotechnol 23:101433 DOI: 10.1016/j.bcab.2019.101443
Hussain T, Khan AA (2020b) Determining the antifungal activity and characterization of Bacillus siamensis AMU03 against Macrophomina phaseolina (Tassi) Goid. Indian Phytopathol. https://doi.org/10.1007/s42360-020-00239-6
Hussain T, Singh S, Danish, M, Pervez, R, Hussain K, Husain, R (2020a) Natural metabolites an eco-friendly approach to manage plant diseases and for better agricultural farming. Natural bioactive products in sustainable agriculture, Edit. by Singh J and Yadav AN. Springer Singapore, pp 1–13. https://doi.org/10.1007/978-981-15-3024-1_1
Hussain T, Akhtar N, Aminedi R, Danish M, Nishat Y, Patel S (2020b) Role of the potent microbial based bio agent and their emerging strategies for the eco-friendly management of agricultural phytopathogens. In: Singh J, Yadav AN (eds) Natural bioactive products in sustainable agriculture. Springer, Singapore, pp 45–66. https://doi.org/10.1007/978-981-15-3024-1_14
Hussain T, Haris M, Shakeel A, Khan AA, Khan MA (2020c) Bio-nematicidal activities by culture filtrate of Bacillus subtilis HussainT-AMU: new promising biosurfactant bioagent for the management of root galling caused by Meloidogyne incognita. Vegetos 33:229–238 https://doi.org/10.1007/s42535-020-00099-5
Iqbal N, Nazar R, Khan MIR, Masood A, Khan NA (2011) Role of gibberellins in regulation of source-sink relations under optimal and limiting environmental conditions. Curr Sci 100(7):998–1007
Kaplan O, Vejvoda V, Plíhal O, Pompach P, Kavan D, Bojarová P, Bezouska K, Macková M, Cantarella M, Jirků V, Kren V, Martínková L (2006) Purification and characterization of a nitrilase from Aspergillus niger K10. Appl Microbiol Biotechnol 73:567–575
Karigar CS, Rao SS (2011) Role of microbial enzymes in the bioremediation of pollutants: a review. Enzyme Rese 2011. https://doi.org/10.4061/2011/805187
Kawasaki A, Donn S, Ryan PR, Mathesius U, Devilla R, Jones A (2016) Microbiome and exudates of the root and rhizosphere of Brachypodium distachyon, a model for wheat. PLoS One 11(10):e0164533
Kerkeb L, Krämer U (2003) The role of free histidine in xylem loading of nickel in Alyssum lesbiacum and Brassica juncea. Plant Physiol 131:716–724
Kiyono M, Oka Y, Sone Y, Tanaka M, Nakamura R, Sato MH, Pan-Hou H, Sakabe K, Inoue K (2012) Expression of bacterial heavy metal transporter MerC fused with a plant SNARE, SYP121 in Arabidopsis thaliana increases cadmium accumulation and tolerance. Planta 235:841–850
Kraomer U (2005) Phytoremediation: novel approaches to cleaning up polluted soils. Curr Opin Biotechnol 16:133–141
Lee CW, Jang SH, Chung HS (2017) Improving the stability of cold-adapted enzymes by immobilization. Catalysts 7:112
Leisola M, Jokela J, Pastinen O, Turunen O (2006) Industrial use of enzymes—essay, laboratory of bioprocess engineering. Helsinki University of Technology, Helsinki
Leung M (2004) Bioremediation: techniques for cleaning up a mess. J Biotechnol 2:18–22
Lili L, Hui S (2007) Advance of research on phytoremediation of petroleum-polluted soil. Environ Prot Chem Ind 3:11
Liu L, Jiang CY, Liu XY, Wu JF, Han JG, Liu SJ (2007) Plant–microbe association for rhizoremediation of chloronitroaromatic pollutants with Comamonas sp. strain CNB-1. Environ Microbiol 9:465–473
Lock M, Nichol T, Murrell JC, Smith TJ (2017) Mutagenesis and expression of methane monooxygenase to alter regioselectivity with aromatic substrates. FEMS Microbiol Lett 13:364. https://doi.org/10.1093/femsle/fnx137
Lugtenberg B, Kamilova F (2009) Plant growth-promoting rhizobacteria. Ann Rev Microbiol 63:541–556
Lunney AI, Zeeb BA, Reimer KJ (2004) Uptake of weathered DDT in vascular plants: potential for phytoremediation. Environ Sci Technol 38(22):6147–6154
Macek T, Mackov M, Kas J (2000) Exploitation of plants for the removal of organics in environmental remediation. Biotechnol Adv 18:23–34
Madadi M, Abbas A (2017) Lignin degradation by fungal pretreatment: a review. J Plant Pathol Microbiol 8:398. https://doi.org/10.4172/2157-7471.1000398
Mahajan P, Kausha J (2018) Role of phytoremediation in reducing cadmium toxicity in soil and water. J Toxicol 2018:4864365
Malik N, Biswas A (2012) Role of higher plants in remediation of metal contaminated sites. Sci Rev Chem Commun 2:141–146
Marmiroli N, McCutcheon SC (2004) Making phytoremediation a successful technology. Phytoremediation 1:85–119. https://doi.org/10.1002/047127304X.ch3
Mandal SD, Sonali, Singh S, Hussain K , Hussain T (2021) Plant Microbe Association for the mutual benefits for plant growth and soil health. A. N. Yadav et al. (eds.), Current Trends in Microbial Biotechnology for Sustainable Agriculture, Environmental and Microbial Biotechnology, Springer Nature Singapore, Pg 95–121, https://doi.org/10.1007/978-981-15-6949-4_5
Maurya DK, Kumar A, Chaurasiya U, Hussain T, Singh SK (2020)Modern era of microbial biotechnology: opportunities and future prospects. Microbiomes and Plant Health. Elsevier, U.K ppg 317–343, https://doi.org/10.1016/B978-0-12-819715-8.00011-2
Marques AP, Rangel AO, Castro PM (2009) Remediation of heavy metal contaminated soils: phytoremediation as a potentially promising clean-up technology. Crit Rev Environ Sci Technol 39:622–654
Martanez M, Bernal P, Almela C, Vaolez D, Garca- Agustan P (2006) An engineered plant that accumulates higher levels of heavy metals than Thlaspi caerulescens, with yields of 100 times more biomass in mine soils. Chemosphere 64:478–485
Martino S, Gupta, Sneha and Walker, Robert (2019) The Role of plant growth-promoting bacteria in the growth of cereals under abiotic stresses. https://doi.org/10.5772/intechopen.87083
McLean KJ, Sabri M, Marshall KR, Lawson RJ, Lewis DG, Clift Balding DPR, Dunford AJ, Warman AJ, McVey JP, Quinn AM, Sutcliffe MJ, Scrutton NS, Munro AW (2005) Biodiversity of cytochrome P450 redox systems. Biochem Soc Trans 33:796–801
Meagher R, Rugh C, Kandasamy M, Gragson G, Wang N (2000) Engineered phytoremediation of mercury pollution in soil and water using bacterial genes. In: Terry N, Bañuelos G (eds) Phytoremediation of contaminated soil and water. Lewis Publishers, Boca Raton, FL, pp 201–219
Mejáre M, Bülow L (2001) Metal-binding proteins and peptides in bioremediation and phytoremediation of heavy metals. Trends Biotechnol 19(2):67–73
Mena-Benitez GL, Gandia-Herrero F, Graham S, Larson TR, McQueen-Mason SJ, French CE, Rylott EL, Bruce NC (2008) Engineering a catabolic pathway in plants for the degradation of 1,2-dichloroethane. Plant Phys 147:1192–1198
Mohamed HI (2011) Molecular and biochemical studies on the effect of gamma rays on lead toxicity in cowpea (Vigna sinensis) plants. Biol Trace Element Res 144:1205–1218
Mohamed HI, Gomaa EZ (2012) Effect of plant growth promoting Bacillus subtilis and Pseudomonas fluorescens on growth and pigment composition of radish plants (Raphanus sativus) under NaCl stress. Photosynthetica 50:263–272
Mohamed HI, Elsherbiny EA, Abdelhamid MT (2016) Physiological and biochemical responses of Vicia faba plants to foliar application with zinc and iron. Gesunde Pflanzen 68:201–212
Moustafa-Farag M, Mohamed HI, Mahmoud A, Elkelish A, Misra AN, Guy KM, Kamran M, Ai S, Zhang M (2020) Salicylic acid stimulates antioxidant defense and osmolyte metabolism to alleviate oxidative stress in watermelons under excess boron. Plan Theory 9:724. https://doi.org/10.3390/plants9060724
Muthukamalam SK, Sivagangavathi S, Dhrishya D, Rani SS (2017) Characterization of dioxygenases and biosurfactants produced by crude oil degrading soil bacteria. Brazil J Microbiol 48(4):637–647
Nigam PS (2013) Microbial enzymes with special characteristics for biotechnological applications. Biomol Ther 3:597–611
Novotny C, Vyas BRM, Erbanova P, Kubatova A, Sasek V (1997) Removal of various PCBs by various white-rot fungi in liquid cultures. Folia Microbiol 42:136–140
Okino-Delgado CH, Prado DZ, Facanali R, Marques MMO, Nascimento AS, Fernandes JC (2017) Bioremediation of cooking oil waste using lipases from wastes. PLoS One 12(10):e0186246
Padmavathiamma PK, Li LY (2007) Phytoremediation technology: hyper-accumulation metals in plants. Water Air Soil Pollut 184:105–126
Palaniyandi SA, Damodharan K, Yang SH, Suh JW (2014) Streptomyces sp. strain PGPA39 alleviates salt stress and promotes growth of ‘Micro Tom’ tomato plants. J Appl Microbiol 117(3):766–773
Park JW, Park BK, Kim JE (2006) Remediation of soil contaminated with 2,4-dichlorophenol by treatment of minced shepherd’s purse roots. Archiv Environ Contam Toxicol 50(2):191–195
Patel PR, Shaikh SS, Sayyed RZ (2016) Dynamism of PGPR in bioremediation and plant growth promotion in heavy metal contaminated soil. Indian J Exp Biol 54:286–290
Peiffer JA, Spor A, Koren O, Jin Z, Tringe SG, Dangl JL (2013) Diversity and heritability of the maize rhizosphere microbiome under field conditions. Proc Natl Acad Sci 110(16):6548–6553
Philippot L, Raaijmakers JM, Lemanceau P, Van Der Putten WH (2013) Going back to the roots: the microbial ecology of the rhizosphere. Nat Rev Microbiol 11(11):789
Pieper DH, Martins dos Santos VAP, Golyshin PN (2004) Genomic and mechanistic insights into the biodegradation of organic pollutants. Curr Opin Biotechnol 15:215–224
Pilon-Smits E (2005) Phytoremediation. Annu Rev Plant Biol 56:15–39
Pinedo I, Ledger T, Greve M, Poupin MJ (2015) Burkholderia phytofirmans PsJN induces long-term metabolic and transcriptional changes involved in Arabidopsis thaliana salt tolerance. Front Plant Sci 6:466
Piontek K, Smith AT, Blodig W (2011) Lignin peroxidase structure and function. Biochem Soc Transactions 29(2):111–116
Prasad MP, Manjunath K (2011) Comparative study on biodegradation of lipid-rich wastewater using lipase producing bacterial species. Indian J Biotechnol 10(1):121–124
Prasannakumar SP, Gowtham HG, Hariprasad P, Shivaprasad K, Niranjana SR (2015) Delftiatsuruhatensis WGR–UOM–BT1, a novel rhizobacterium with PGPR properties from Rauwolfia serpentina (L.) Benth. ex Kurz also suppresses fungal phytopathogens by producing a new antibiotic—AMTM. Lett Appl Microbiol 61(5):460–468
Puschenreiter M, Wieczorek S, Horak O, Wenzel WW (2003) Chemical changes in the rhizosphere of metal hyperaccumulator and excluder Thlaspi species. J Plant Nutr Soil Sci 166:579–584
Ramjegathesh R, Samiyappan R, Raguchander T, Prabakar K, Saravanakumar D (2013) Plant–PGPR interactions for pest and disease resistance in sustainable agriculture. In: Maheshwari DK (ed) Bacteria in agrobiology: disease management. Springer, Berlin, pp 293–320
Rao MA, Scelza R, Scotti R, Gianfreda L (2010) Role of enzymes in the remediation of polluted environments. J Soil Sci Plant Nutri 10(3):333–353
Riffaldi R, Levi-Minzi R, Cardelli R, Palumbo S, Saviozzi A (2006) Soil biological activities in monitoring the bioremediation of diesel oil-contaminated soil. Water Air Soil Pollut 170(1–4):3–15
Rignell-Hydbom A, Skerfving S, Lundh T, Lindh CH, Elmstahl S, Bjellerup P, Jonsson BAG, Stromberg U, Akesson A (2009) Exposure to cadmium and persistent organochlorine pollutants and its association with bone mineral density and markers of bone metabolism on postmenopausal women. Environ Res 109(8):991–996
Rodrıguez Couto S, Toca Herrera JL (2006) Industrial and biotechnological applications of laccases: a review. Biotechnol Advan 24(5):500–513
Rubilar O, Diez MC, Gianfreda L (2008) Transformation of chlorinated phenolic compounds by white rot fungi. Critical Rev Environ Sci Technol 38(4):227–268
Ruiz-Duenas FJ, Morales M, Perez-Boada M et al (2007) Manganese oxidation site in Pleurotus eryngii versatile peroxidase: a site-directed mutagenesis, kinetic, and crystallographic study. Biochemistry 46(1):66–77
Ruley JA, Amoding A, Tumuhairwe JB, Basamba TA, Opolot E, Oryem-Origa H (2020) Enhancing the phytoremediation of hydrocarbon-contaminated soils in the sudd wetlands, south sudan, using organic manure. Appl Environ Soil Sci 2020:4614286
Rupali D, Dibyengi S (2004) Biotechnology in phytoremediation of metal-contaminated soils. Proc Indian Natn Sci Acad B 701:99–108
Sakakibara M, Watanabe A, Inoue M (2010) Phytoextraction and phytovolatilization of arsenic from As-contaminated soils by Pteris vittata. In: Proceedings of the annual international conference on soils, sediments, water and energy. p 26
Saleem M, Arshad M, Hussain S, Bhatti AS (2007) Perspective of plant growth promoting rhizobacteria (PGPR) containing ACC deaminase in stress agriculture. J Industrial Microbiol Biotechnol 34(10):635–648
Seth CS, Kumar Chaturvedi P, Misra V (2008) The role of phytochelatins and antioxidants in tolerance to Cd accumulation in Brassica juncea L. Ecotoxicol Environ Saf 71:76–85
Shahzad R, Khan AL, Bilal S, Waqas M, Kang SM, Lee IJ (2017) Inoculation of abscisic acid-producing endophytic bacteria enhances salinity stress tolerance in Oryza sativa. Environ Exp Bot 136:68–77
Sharma D, Sharma B, Shukla AK (2011) Biotechnological approach of microbial lipase: a review. Biotechnology 10(1):23–40
Shilev SI, Ruso J, Puig A, Benlloch M, Jorrin J, Sancho E (2001) Rhizospheric bacteria promote sunflower (Helianthus annuus L.) plant growth and tolerance to heavy metals. Minerva Biotechnol 13:37–39
Singh R, Mittal A, Kumar M, Mehta PK (2016) Amylases: a note on current applications. Inter Sci Comm 5(11):27–32
Sirajuddin S, Rosenzweig AC (2017) Enzymatic oxidation of methane. Biochemistry 54(14):2283–2294
Smalla K, Sessitsch A, Hartmann A (2006) The Rhizosphere: ‘soil compartment influenced by the root’. Blackwell, Oxford
Sofy MR, Seleiman MF, Alhammad BA, Alharbi BM, Mohamed HI (2020) Minimizing adverse effects of Pb on maize plants by combined treatment with jasmonic, salicylic acids and proline. Agronomy 10:699. https://doi.org/10.3390/agronomy10050699
Sonali B (2011) Importance of phytoremediation. Biotech Articles. https://www.biotecharticles.com/Applications-Article/Importance-of-Phytoremediation-613.html, (accessed on 8-02-2021)
Stomp AM, Han KH, Wilbert S (1994) Genetic strategies for enhancing phytoremediation. Ann N Y Acad Sci 721:481–491
Sun Y, Cheng J (2002) Hydrolysis of lignocellulosic materials for ethanol production: a review. Bioresour Technol 83(1):1–11
Susarla S, Medina V, Mccutcheon S (2002) Phytoremediation: An Ecological Solution to Organic Chemical Contamination. Ecological Engineering. 18:647–658. https://doi.org/10.1016/S0925-8574(02)00026-5
Syed K, Porollo A, Miller D, Yadav JS (2013) Rational engineering of the fungal P450 monooxygenase CYP5136A3 to improve its oxidizing activity toward polycyclic aromatic hydrocarbons. Protein Eng Des Sel 26(9):553–557
Ten Have R, Teunissen PJM (2001) Oxidative mechanisms involved in lignin degradation by white-rot fungi. Chem Revi 101(11):3397–3413
Tewari S, Arora NK (2015) Plant growth promoting fluorescent Pseudomonas enhancing growth of sunflower crop. Int J Sci Technol Soc 1(1):51–53
Theeta S, Meeinkuirt W, Saengwilai P, Pichtel J, Taeprayoon P (2018) Aquatic plants for phytostabilization of cadmium and zinc in hydroponic experiments. Environ Sci Pollut Res 25(15):14964–14976
Tsukihara T, Honda Y, Sakai R, Watanabe T, Watanabe T (2006) Exclusive overproduction of recombinant versatile peroxidase MnP2 by genetically modified white rot fungus, Pleurotus ostreatus. J Biotechnol 126(4):431–439
Vesely T, Tlustos P, Szakova J (2012) Organic acid enhanced soil risk element (Cd, Pb and Zn) leaching and secondary bioconcentration in water lettuce (Pistia stratiotes L) in the rhizofiltration process. Int J Phytoremediation 14(4):335–349
Viaene T, Langendries S, Beirinckx S, Maes M, Goormachtig S (2016) Streptomyces as a plant’s best friend? FEMS Microbiol Ecol 92(8):1–10.fiw119. https://doi.org/10.1093/femsec/fiw119
Vidal CF, Oliveira JA, da Silva AA, Ribeiro C, Farnese FDS (2019) Phytoremediation of arsenite-contaminated environments: is Pistia stratiotes L. a useful tool? Ecol Indic 104:794–801
Viswanath B, Rajesh B, Janardhan A, Kumar AP, Narasimha G (2014) Fungal laccases and their applications in bioremediation. Enzyme Res 2014:163242. https://doi.org/10.1155/2014/163242
Wang C, Wang C, Gao YL, Wang YP, Guo JH (2016) A consortium of three plant growth-promoting rhizobacterium strains acclimates Lycopersicon esculentum and confers a better tolerance to chilling stress. J Plant Growth Regul 35(1):54–64
Watt NR (2007) Testing amendments for increasing soil availability of radionuclides. Phytoremediat Methods Rev 23:131–137
Wittenmayer L, Merbach W (2005) Plant responses to drought and phosphorus deficiency: contribution of phytohormones in root-related processes. J Plant Nutri Soil Sci 168(4):531–540
Xenia ME, Refugio RV (2016) Microorganisms metabolism during bioremediation of oil contaminated soils. J Bioremed Biodegr 7:2. https://doi.org/10.4172/2155-6199.1000340
Xia HL, Chi XY, Yan ZJ, Cheng WW (2009) Enhancing plant uptake of polychlorinated biphenyls and cadmium using tea saponin. Bioresour Technol 100(20):4649–4653
Xing H, Tan L, An L, Zhao Z, Wang S, Zhang C (2004) Evidence for the involvement of nitric oxide and reactive oxygen species in osmotic stress tolerance of wheat seedlings: inverse correlation between leaf abscisic acid accumulation and leaf water loss. Plant Growth Regul 42(1):61–68
Yadav BK, Siebel MA, Bruggen JAV (2011) Rhizofiltration of a heavy metal (lead) containing wastewater using the wetland plant Carex pendula. CLEAN—Soil, Air Water 39(5):467–474
Yamaguchi S (2008) Gibberellin metabolism and its regulation. Ann Rev Plant Biol 59:225–251
Yan-de J, Zhen-li H, Xiao-e Y (2007) Role of soil rhizobacteria in phytoremediation of heavy metal contaminated soils. J Zhejiang University Sci B 8(3):192_207
Yang X, Li T, Yang J, He Z, Lu L, Meng F (2006) Zinc compartmentation in root, transport into xylem, and absorption into leaf cells in the hyperaccumulating species of Sedum alfredii Hance. Planta 224:185–195
Yang J, Kloepper JW, Ryu CM (2009) Rhizosphere bacteria help plants tolerate abiotic stress. Trends Plant Sci 14(1):1–4
Zahar Haichar F, Marol C, Berge O, Rangel-Castro JI, Prosser JI, Balesdent JM (2008) Plant host habitat and root exudates shape soil bacterial community structure. ISME J 2(12):1221
Zebelo S, Song Y, Kloepper JW, Fadamiro H (2016) Rhizobacteria activates (+)-δ-cadinene synthase genes and induces systemic resistance in cotton against beet armyworm (Spodopteraexigua). Plant Cell Environ 39(4):935–943
Zhang S, Li T, Huang H, Zou T, Zhang X, Yu H, Zheng Z, Wang Y (2012) Cd accumulation and phytostabilization potential of dominant plants surrounding mining tailings. Environ Sci Pollut Res 19:3879–3888
Zhuang X, Chen J, Shim H, Bai Z (2007) New advances in plant growth promoting rhizobacteria for bioremediation. Environ Inter 33:406–413
Zou T, Li T, Zhang X, Yu H, Luo H (2011) Lead accumulation and tolerance characteristics of Athyrium wardii (Hook.) as a potential phytostabilizer. J Hazard Mater 186:683–689
Author information
Authors and Affiliations
Editor information
Editors and Affiliations
Rights and permissions
Copyright information
© 2021 The Author(s), under exclusive license to Springer Nature Switzerland AG
About this chapter
Cite this chapter
Siddiqua, K.S., Farooqui, S.A., Hussain, T., Mohamed, H.I. (2021). Microbial Enzymes and Their Role in Phytoremediation. In: Mohamed, H.I., El-Beltagi, H.ED.S., Abd-Elsalam, K.A. (eds) Plant Growth-Promoting Microbes for Sustainable Biotic and Abiotic Stress Management. Springer, Cham. https://doi.org/10.1007/978-3-030-66587-6_22
Download citation
DOI: https://doi.org/10.1007/978-3-030-66587-6_22
Published:
Publisher Name: Springer, Cham
Print ISBN: 978-3-030-66586-9
Online ISBN: 978-3-030-66587-6
eBook Packages: Biomedical and Life SciencesBiomedical and Life Sciences (R0)