Abstract
Fatty acid composition of biological membranes functionally adapts to environmental conditions by changing its composition through the activity of lipid biosynthetic enzymes, including the fatty acid desaturases. Three major desaturases are present in yeasts, responsible for the generation of double bonds in position C9–C10, C12–C13 and C15–C16 of the carbon backbone. In this review, we will report data addressed to define the functional role of basidiomycete and ascomycete yeast desaturase enzymes in response to various external signals and the regulation of the expression of their corresponding genes. Many yeast species have the complete set of three desaturases; however, only the Δ9 desaturase seems to be necessary and sufficient to ensure yeast viability. The evolutionary issue of this observation will be discussed.
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Introduction
Fatty acids (FAs) are a family of molecules characterized by the length of the carbon backbone and by the presence or absence, number and position of carbon–carbon double bonds. Commonly found FAs range from 16 to 24 carbon atoms and have from 1 to 6 double bonds, when present. Shorter and longer FAs are also found in lower amounts. FAs are essential components of cytoplasmic membranes and determine structural and functional properties of the membranes on the basis of their assortment in the phospholipidic moiety. Unsaturated FAs (UFAs) contain one (Monounsaturated FAs: MUFAs) or many (Polyunsaturated FAs: PUFAs) double bonds and their presence in the phospholipids allows to adapt membrane fluidity in response to changing conditions. FAs are also carbon and energy reservoirs and participate in additional cellular functions; for example, protein modification and biosynthesis of other metabolites, like sphingolipids and ceramides, prostaglandins and leukotrienes.
Steps of de novo FAs biosynthesis are strongly conserved among organisms and require acetyl-CoA, carbon dioxide and NADPH. In yeasts, the reaction is initiated by the Acetyl-CoA Carboxylase Acc1 that produces malonyl-CoA. Polymerization is then obtained by cyclic addition of acyl groups to malonyl-CoA and reduction to methylene of the resulting β-carbonyl bond. These steps are carried out by the Fatty Acid Synthases Fas1 and Fas2, which are the β and α subunits, respectively. Fas2 contains the Acyl Carrier Protein (ACP) domain (Mohamed et al. 1988). Polymerization produces palmitic (C16:0) and stearic (C18:0) acids (Fig. 1). Longer FAs, up to C24-C26, can be synthesized in the yeast Saccharomyces cerevisiae by the Elongases Elo2/Fen1 and Elo3 (Oh et al. 1997). The family of UFAs is then generated, starting from the C16:0 and C18:0 substrates, by the action of Fatty Acid Desaturases (FADs). FADs are redox enzymes that introduce carbon–carbon double bonds using molecular oxygen as electron acceptor, and the saturated FAs and cytochrome b5 or Ferredoxin as electron donors. Oxygen is activated by coordination with the iron atoms bound to the histidine rich sequences present in the FAD enzymes (Martin et al. 2007). Cytochrome b5 (Cytb5) is regenerated by a NADH-dependent Cytb5 Dehydrogenase while Ferredoxin is recycled by Ferredoxin Oxidoreductases.
FADs can be classified by cellular localization, by the FA substrate and by the position of the double bond they introduce (Los and Murata 1998). In yeasts, FADs are ER bound enzymes and use Acyl-CoA as substrate and Cytochrome b5 as electron donor. Depending on double bond position, FA desaturases can be divided into Stearoyl-CoA Desaturases (SCDs), Omega Desaturases and Front-End Desaturases (Hashimoto et al. 2008): SCDs introduce a double bond at position 9 (Δ9 Desaturases) of palmitic (C16:0) or stearic (C18:0) acids and generate palmitoleic and oleic acids (C16:1Δ9 and C18:1Δ9). These enzymes are present in all eukaryotes examined so far. The Omega Desaturases introduce a double bond between the alkyl terminus of the FA and an already existing double bond. They synthesize C18:2Δ9,12 (linoleic acid) and C18:3Δ9,12,15 (α-linolenic acid, ALA) and are also called Δ12 and Δ15 Desaturases, respectively. The Front-End group of desaturases introduce double bonds between the carboxylic terminus of the FA and a preexisting double bond and are named Δ4, Δ5, Δ6 and Δ8 Desaturases. Another group of desaturases is the Δ4 Sphingolipid Desaturase, specifically involved in sphingolipid biosynthesis. The FA biosynthetic network is completed by elongases activities. Two families of elongases can be distinguished: elongases active on saturated FAs or on MUFAs (S/MUFA Elongases) and elongases active on PUFAs. S/MUFA Elongases are widely distributed and have substrate length specificity, like the yeast Elongases Elo1, Elo2 and Elo3 (Toke and Martin 1996; Oh et al. 1997). PUFA Elongases are absent in fungi and plants (Hashimoto et al. 2008).
The structure of ER-bound FAD enzymes is characterized by three typical histidine rich sequences, spaced by trans-membrane (TM) domains, essential to hold iron atoms in the catalytic center on the cytoplasmic side of the membrane. A large scale analysis of eukaryotic desaturases (Hashimoto et al. 2008) revealed that the precise sequence of the histidine rich domains is specific for the already cited SCD, Omega, Front-End and Sphingolipid Desaturases. In fungi, the SCDs have a Cyt b5 domain in the carboxy terminal part of the enzyme. Differently, the Omega Desaturases lack the Cyt b5 domain, indicating that desaturases might also react with free Cytochrome b5 to exchange reducing power. Evolutionary studies showed that, among Omega Desaturases, the Δ12 enzymes are ancestors of the Δ15 subfamily (Wang et al. 2013). Interestingly, fungal Omega Desaturases have been described to have bifunctional Δ12/Δ15 activities (Buček et al. 2014; Cui et al. 2016). Among the Front-End Desaturases, only the widely diffused Δ5 and Δ6 Desaturases have been found also in fungi (Michaelson et al. 1998; Sakurdani et al. 1999; Laoteng et al. 2000; Hong et al. 2002a, b). Differently from SCDs, these desaturases contain the Cyt b5 domain in the N-termini of the proteins.
An increasing interest is arising around yeast and, in general, fungal desaturases due to potential biotechnological application and health issues deriving from the important regulatory functions of PUFAs in human physiology. Engineered yeasts and fungi can be developed to increase the oil content in oleaginous species for biofuel production (see for example Qiao et al. 2015; Wang et al. 2016), for production of industrially important FAs (Meesapyodsuk et al. 2015) or PUFAs with nutritional value (Li et al. 2009; Kimura et al. 2009; Wan et al. 2009).
Yeast fatty acid desaturases
To date, literature indicates that yeasts have one, two or three different desaturases belonging to the SCD and Omega (Δ12 and Δ15) Desaturase families. In order to investigate the distribution of these enzymes among yeast species, we used the yeast Kluyveromyces lactis, which has been demonstrated to harbor all three desaturases (Kainou et al. 2006; Micolonghi et al. 2012), to explore the large yeast sequence database of Genome Resources for Yeast Chromosomes (GRYC: http://gryc.inra.fr/index.php?page=home) containing the annotated full sequences of 34 yeast species. The proteins used as query were KlOle1, Fad2 and Fad3, encoded by genes KLLA0C05566g, KLLA0F07095g and KLLA0B00473g, respectively. Protein sequences were aligned to the database sequences using the BLASTP (2.4.0+) algorithm. Results are summarized in Table 1.
SCD (Δ9) desaturases. All the yeast species contained a gene coding for SCD (Table 1), suggesting that this enzyme is essential for cell viability and ensures a minimal qualitative (only MUFAs) desaturation to membranes for proper functionality. Comparative analysis of the protein sequences revealed a high identity (59.7–82.6%) distributed along the whole protein (Table 2) except for Lachancea waltii SCD, that was 84.4% identical to KlOle1 but only in 339 amino acids of the C-terminus portion, and for SCDs of Arxula adeninivorans and Yarrowia lipolytica that showed identity (48.3–57.8%) in 425 and 408 amino acids, respectively. A. adeninivorans and Y. lipolytica are also evolutionary more distant yeasts. SCD with limited identity were found also in Cyberlindnera fabianii (CYFA0S07e03004g) and Kuraishia capsulata (KUCA_T00001427001). Yeasts of the Pichia/Hansenula group, of the Candida group and K. capsulata had two or more genes coding for SCDs. Pichia/Hansenula and Candida yeasts belong to the CTG clade, that is characterized by a change in the genetic codon CUG from leucine to serine (Butler et al. 2009), and the presence of two SCD genes in Candida and Pichia has been demonstrated by previous studies (Krishnamurthy et al. 2004; Yu et al. 2012b). Duplication of SCD genes in the clade suggests that this event occurred early in the evolution of this branch. The finding of duplicated SCD genes also in K. capsulata, that diverged before the CTG event (Morales et al. 2013), might help to locate the gene duplication upstream to clade divergence. Gene redundancy was even more pronounced in Millerozyma farinosa, in which four copies of SCD genes were present: genes PISO0I17894g and PISO0J19655g shared about 95% identity and genes PISO0B11617g and PISO0A11550g were 100% identical. A preliminary synteny analysis showed that proximal genes were identical for the homologous genes, but different between pairs, indicating independent duplication events. This finding is coherent with the polyploidization event described for this yeast (Mallet et al. 2012).
Omega (Δ12) desaturases. K. lactis Δ12 (Fad2) and Δ15 (Fad3) desaturases share 62.4% identity in 386 amino acids (Fad2 and Fad3 are 410 and 415 amino acids long, respectively): the specificity of their activity has been established by the determination of their biosynthetic products in the heterologous yeast S. cerevisiae (Kainou et al. 2006) and in K. lactis deleted strains (De Angelis et al. 2016). Due to the high similarity of the two proteins, discrimination between Δ12 and Δ15 enzymes by simple sequence alignment might not be conclusive. Indeed, the alignment of the GRYC database with K. lactis Fad2 and Fad3 yielded two overlapping sets of proteins with very high identity. However, a block of sequences with best scores to Fad2 was exactly the block with lower scores to Fad3 and viceversa. In addition, any yeast species was represented only once in each block. These observations allowed us to discriminate between Δ12 and Δ15 enzymes in each yeast species, although a confirmation by assaying the actual activity might be necessary.
Δ12 desaturases had 56.8–73.9% identity values (Table 2) and were found in all yeast species (Table 1), except those belonging to the WGD (Whole Genome Duplication) clade. The WGD allowed the occurrence in the following evolution of different events, including multiplication of some genes like glycolytic genes and sugar transporter genes, and loss of some metabolic pathways (Piškur and Langkjær 2004). The absence of desaturases for the synthesis of PUFAs in this clade might be the consequence of such loss events. In these yeasts, the modulation of membrane properties and functionality, for example fluidity, can be thus accomplished only by varying the relative amount of MUFAs or the FA backbone length and probably reflects the adaptation to environments subjected to reduced variability. All Δ12 desaturases were encoded by single genes except in M. farinosa that, similarly to the previously described SCDs, had two Δ12 genes (PISO0C09088g and PISO0D09155g) sharing 100% identity and with identical genomic environs but placed on different chromosomes. Δ12 desaturases of A. adeninivorans, Y. lipolytica, K. capsulata and M. farinosa showed lower identity values to Fad2 than the other desaturases (56.8–58.6%, Table 2), probably due to longer evolutionary distance. These values were actually lower than the identity value of Fad3 (62.4%). Although the existence of Δ15 desaturase without Δ12 desaturase is highly improbable, in these cases, confirmatory assays might be necessary to establish enzyme specificity because bifunctional Δ12/Δ15 desaturases are known in fungi (see for example Buček et al. 2014); however, only C18:2 FAs were detected in Y. lipolytica (Liu et al. 2015) indicating that the Omega desaturase in this yeast is Δ12.
Omega (Δ15) desaturases. The yeast species with Δ15 desaturase (Table 1) belonged only to the CTG clade (except M. farinosa) and to the entire Lachancea genus, in addition to the reference yeast K. lactis. Identity of these enzymes to Fad3 ranged from 65.6 to 82.7%. The high identity values between Δ12 and Δ15 desaturases suggests a common Δ12 ancestor from which Δ15 enzymes evolved (Wang et al. 2013). A phylogenetic analysis was performed using PhylomeDBv4, a program that provides phylomes reconstructed following a gene-based approach (Huerta-Cepas et al. 2011, 2014, http://phylomedb.org: a direct link to this program can be found in the GRYC site). The phylogenetic analysis of Omega desaturases confirmed this evolutionary hypothesis (Fig. 2).
Deletion of FA desaturases genes
Gene deletion or mutagenesis and phenotypic analysis of the resulting mutant strain is a diffused strategy to start the characterization and to assign a function to a protein or enzyme in yeast. The most commonly studied yeasts have been subjected to this approach. The successful generation of deleted strains indicates that the gene is not an essential one. This is the case of the deletion of a gene coding for uniquely biosynthetic enzymes that can be simply bypassed by the addition and assimilation of the biosynthetic product from the growth medium. However, if the enzymes have additional cellular functions, suppression by the biosynthetic product might not be effective or completely effective. If the additional function is important or essential for cellular fitness or viability, the deletion of the gene might be hard or impossible to be generated and selected.
S. cerevisiae has a single SCD gene OLE1 (YGL055W) whose deletion caused oleate/palmitoleate auxotrophy (Stukey et al. 1989). A prolonged UFAs deprivation induced an increased frequency of cell death but quiescent-remaining cells recovered wild type growth upon UFAs supplementation. Other interesting phenotypes are associated to OLE1 mutations, like mitochondrial dynamics defects (Stewart and Yaffe 1991). Candida albicans has two SCD genes: C1_08360C_A and C2_07090C_A, corresponding to the OLE1 and OLE2 genes, respectively. In this organism, which is a dimorphic pathogen yeast, a homozygous deletion of OLE1 couldn’t be generated suggesting an essential role of this gene (Krishnamurthy et al. 2004). Altered OLE1 expression caused impaired filamentous growth and chlamydospore formation, in addition to UFAs auxotrophy. Wild type phenotypes were recovered by UFAs supply and/or proper OLE1 expression suggesting a close correlation between morphogenesis and membrane composition. No phenotype was associated to the deletion of OLE2, indicating a marginal role of the second SCD in essential biological functions of this yeast. Candida parapsilosis also has two SCD genes, CPAR2_206900 and CPAR2_406570. Differently from C. albicans, the OLE1 gene (CPAR2_206900) could be deleted to generate homozygous mutant strains which resulted sensitive to osmolytes, oxidative stress (H2O2), Sodium Dodecyl Sulphate (SDS) and with changed host-pathogen responses, in addition to UFAs auxotrophy (Nguyen et al. 2011). SCD genes have been deleted also in the yeast Pichia pastoris (Komagataella pastoris), not included in the GRYC database (Yu et al. 2012b; Zhang et al. 2015). In this yeast, the deletion of both SCD genes (named FAD9A and FAD9B) caused UFAs auxotrophy while only the deletion of FAD9A induced resistance to osmostress and SDS. The increased susceptibility or resistance to stressing substances and conditions in the SCD mutant strains might be explained by changed biochemical properties of membranes, as fluidity and/or permeability, caused by changes of FAs composition. Deletion of the single SCD gene (KlOLE1) has been attempted also in K. lactis without success (De Angelis et al. 2016) suggesting that, similarly to C. albicans, the SCD gene is essential also in this yeast.
The deletion of Omega desaturases genes has been reported for C. albicans, P. pastoris, Lachancea kluyveri, K. lactis and Hansenula polymorpha, the latter yeast not included in GRYC. No phenotypes were reported for C. albicans deletion mutants of CaFAD2 and CaFAD3 genes (Murayama et al. 2006). Slow growth phenotype at 15° and 30 °C and in the presence of ethanol was recorded for the deletion of FAD12 (FAD2) gene in P. pastoris (Yu et al. 2012b). The deletion of FAD12 resulted also in increased resistance to H2O2 and increased ROS content in this yeast (Zhang et al. 2015). Similarly to the deletion of SCD genes, phenotypes of P. pastoris FAD12 deleted strains might be ascribed to changes of membrane properties. No phenotype was associated to the deletion of FAD15. In K. lactis, phenotyping revealed only a reduced growth at 8 °C caused by the deletion of FAD2, while no phenotypes were associated to FAD3 deletion (De Angelis et al. 2016). Phenotypic analysis was not reported for the deletion of FAD2 and FAD3 in L. kluyveri and H. polymorpha (Watanabe et al. 2004; Oura and Kajiwara 2004; Sangwallek et al. 2014).
Deletion analysis indicate that the major growth defects (ranging from the simple UFAs auxotrophy, caused by the absence of basic Δ9 desaturase activity, to a more relevant cellular function essential for cell viability) result from the deletion of SCD genes, as also suggested by the unsuccessful attempt to generate SCD null mutants in C. albicans and K. lactis. Palmitoleic and oleic acids seem thus to be necessary and sufficient to ensure proper cellular fitness to yeasts in the routine conditions and media tested for basic research. When present, the second SCD genes seem to have a minor role. As far as Omega Desaturases are concerned, only Fad2 (Δ12) desaturase seem to contribute effectively to cell functions, as emerged from phenotypic analyses.
Transcription regulation of desaturases genes
Early studies on transcription regulation of desaturase genes were performed on S. cerevisiae OLE1 gene. The effects of UFAs, of low temperature (10–15 °C) and of low oxygen tensions were preferentially studied. Promoter analysis allowed to identify sequences responsive to UFAs (Bossie and Martin 1989; McDonough et al. 1992; Choi et al. 1996) and low oxygen (Kwast et al. 1999; Nakagawa et al. 2001; Vasconcelles et al. 2001). Transcription of OLE1 was repressed by UFAs (the products), and induced by FAs (the substrates) to some extent. Low temperature induced OLE1 transcription thus favoring, consequently, fluidization of membranes by increasing UFAs content (Nakagawa et al. 2002). Hypoxia (low oxygen tension) also induced transcription of OLE1, but the connection between this environmental condition and membrane composition is not immediate. The increased expression of the desaturase in hypoxia might be necessary to compensate the reduced availability of the O2 substrate or to ensure resistance to the accumulation of ethanol (Alexandre et al. 1994), which is the favored end-product of hypoxic metabolism (fermentation). SCD gene transcription has been studied also in other yeasts with comparable findings. In K. lactis, KlOLE1 transcription was induced by hypoxia and ethanol (Micolonghi et al. 2012; De Angelis et al. 2016). In P. pastoris, FAD9A was induced by low temperature and repressed by UFAs (Yu et al. 2012a). FAD9A transcription was also induced by hydrogen peroxide (Zhang et al. 2015). Transcription of OLE1 was repressed by UFAs in Cryptococcus curvatus (Meesters and Eggink 1996) while in H. polymorpha (Lu et al. 2000) and Saccharomyces (now Lachancea) kluyveri (Kajiwara 2002) a small repression or no effect on OLE1 expression by UFAs were reported, respectively. Other studies were addressed to carbon source regulation; in C. parapsilosis, OLE1 was induced by glucose (Pereira et al. 2015).
Expression of Omega Desaturases further modulates membrane fluidity by providing PUFAs. However, Omega Desaturases might respond differently to environmental conditions. For example, FAD2 was induced and FAD3 repressed by hypoxia in K. lactis. FAD3 was also repressed by low temperature, but induced by ethanol (De Angelis et al. 2016). Low temperature induced Δ12 desaturase transcription in Rhodotorula glutinis (He et al. 2015). In L. kluyveri, low temperature induced both FAD2 and FAD3 transcription while UFAs had no effect (Watanabe et al. 2004; Oura and Kajiwara 2004). In H. polymorpha, UFAs repressed only FAD3 transcription, but both FAD2 and FAD3 were induced by hypoxia (Sangwallek et al. 2014). Carbon source regulation of Omega Desaturase (Δ12) was studied in Ashbya (Eremothecium) gossypii, resulting in glucose induction of transcription and repression by soybean oil (Ledesma-Amaro et al. 2014).
In general, transcription regulation of desaturase genes and phenotypes caused by desaturase genes deletion can be functionally connected because gene regulation by a chemical or physical factor might correspond to sensitivity/resistance of the deleted strain to the same factor. However, although the environmental factors usually assayed are all effective in transcription modulation of desaturase genes, responses and/or adaptation to changes might act differently in different yeasts. Evolutionary history and specific niches might have contributed to this subtle diversification.
Regulation by Mga2
Mechanisms of transcription regulation of yeast desaturase genes have not been studied in detail except for the involvement of Mga2/Spt23-homologous proteins. These transcription factors are encoded by the ohnologue pair of genes MGA2 and SPT23 in S. cerevisiae in which their contribution to the regulation of OLE1 has been studied extensively. They are ER-bound proteins activated by proteasomal proteolysis (Hoppe et al. 2000) and mediating the transcriptional response of OLE1 to UFAs, low temperature and hypoxia (Chellappa et al. 2001; Jiang et al. 2002) by inducing/repressing transcription and/or affecting mRNA stability (Kandasamy et al. 2004; Jiang et al. 2001). Interestingly, the double deleted strain mga2Δ-spt23Δ has the same auxotrophic requirement for UFAs as the ole1 mutant strains, while the single deleted strains are viable (Zhang et al. 1999; Chellappa et al. 2001).
Mga2/Spt23 proteins and genes have been studied also in other yeasts—K. lactis, C. albicans, P. pastoris, Y. lipolytica—included the fission yeast Schizosaccharomyces pombe (Micolonghi et al. 2012; Oh and Martin 2006; Yu et al. 2012a; Liu et al. 2015; Burr et al. 2016). Investigations have been especially addressed to lipid biosynthesis and regulation of desaturases. However, in K. lactis, also other aspects have been studied, in particular fermentative and respiratory metabolisms (Ottaviano et al. 2015). In all these yeasts a single gene copy was present, coding for Mga2/Spt23 proteins, and in all cases, except for Y. lipolytica, deleted strains showed reduced growth rates. This defect was compensated by the addition of UFAs in the medium, indicating a relevant role of these proteins in desaturases’ gene regulation. In fact, transcription of the SCD and /or the Δ12 desaturase genes was affected in the deleted Mga2/Spt23 mutants of K. lactis, C. albicans, P. pastoris and S. pombe. Also the role of these regulatory factors in responses to environmental signals, such as low oxygen, low temperature and UFAs, has been studied. Interestingly, studies on Mga2 factor in Y. lipolytica showed opposite effects on desaturases gene expression and lipid composition compared to the other studied yeasts, suggesting a repressive activity of Mga2 on OLE1 and Δ12 genes (Liu et al. 2015).
Putative desaturases with weak similarity to SCD
Phylogenetic analysis of KlOLE1 gene (KLLA0C05566g, Fig. 3) showed the occurrence of a gene duplication that generated SCD genes and a second group of genes. OLE2 and second copies of OLE1 genes were elements of the second group and, as reported above, were already described, although a functional role and contribution of the SCD desaturases encoded by these genes to FAs biosynthesis has not been studied in detail to date. A distinct branch of these genes included K. lactis KLLA0C10692g. We used this gene to align proteins from GRYC database and we could select a sharply defined group of proteins sharing 50–58% identity over the whole protein length (KLLA0C10692g is 521 amino acids long). Ole2 and second Ole1 proteins were not in this group. These Putative SCD Desaturases (PSD) were all belonging to species of the KLE and ZT clades (Lachancea group, Zygosaccharomyces, Eremothecium and Kluyveromyces yeasts). SMART (http://smart.embl-heidelberg.de/) analysis of PSD proteins revealed that all of them contained a Cyt-b5 domain, suggestive of a redox catalytic activity, but an unambiguous desaturase domain was not always present and some PSD also lack trans-membrane domains (not shown). For example, K. lactis PSD contained only the Cyt-b5 domain and a GAF (domain present in phytochromes and cGMP-specific phosphodiesterases) domain. The occurrence of PSDs in a well defined taxonomic group of yeasts (all of them have Omega Desaturases but they are distinct from CTG clade) indicates a specific evolutionary role of these proteins, but the biochemical function and metabolic/physiological role of these enzymes remain to be elucidated by further analysis.
Conclusive remarks
Our overview on yeast Fatty Acids Desaturases showed that various evolutionary events generated duplication, deletion and functional differentiation of desaturase genes, suggesting that diversification of the composition of unsaturated FAs allowed adaptation to different environment of individual yeast species. However, only MUFAs seem to be essential for yeast viability, at least in standard laboratory conditions. The same environmental signals and shared mechanisms govern transcription of desaturase genes among yeasts. In pathogenic Candida yeasts, correlations between FA composition, FA desaturases and infective functions could be proved.
References
Alexandre H, Rousseaux I, Charpentier C (1994) Relationship between ethanol tolerance, lipid composition and plasma membrane fluidity in Saccharomyces cerevisiae and Kloeckera apiculata. FEMS Microbiol Lett 124:17–22. doi:10.1111/j.1574-6968.1994.tb07255.x
Bossie MA, Martin CE (1989) Nutritional regulation of yeast ∆-9 fatty acid desaturase activity. J Bacteriol 171:6409–6413
Buček A, Matouškova P, Sychrová H, PichováI, Hrušková-Heidingsfeldová O (2014) ∆12-fatty acid desaturase from Candida parapsilosis is a multifunctional desaturase producing a range of polyunsaturated and hydroxylated fatty acids. PLoS ONE 9:e93322. doi:10.1371/journal.pone.0093322
Burr R, Stewart EV, Shao W, Zhao S, Hannibal-Bach HK, Ejsing CS, Espenshade PJ (2016) Mga2 transcription factor regulates an Oxygen-responsive lipid homeostasis pathway in fission yeast. J Biol Chem 291:12171–12183. doi:10.1074/jbcM116.723650
Butler G et al (2009) Evolution of pathogenicity and sexual reproduction in eight Candida genomes. Nature 459:657–662. doi:10.1038/nature08064
Chellappa R, Kandasamy P, Oh CS, Jiang Y, vemula M, Martin CE (2001) The membrane proteins, Spt23p and Mga2p, play distinct roles in the activation of Saccharomyces cerevisiae OLE1 gene expression. Fatty acid-mediated regulation of Mga2p activity is independent of its proteolytic processing into a soluble transcription activator. J Biol Chem 276:43548–43556. doi:10.1074/jbc.M107845200
Choi J-Y, Stukey J, Hwang S-Y, Martin CE (1996) Regulatory elements that control transcription activation and unsaturated fatty acid-mediated repression of the Saccharomyces cerevisiae OLE1 gene. J Biol Chem 271:3581-35-89
Cui J, He S, Ji X, Lin L, Wei Y, Zhang Q (2016) Identification and characterization of a novel bifunctional ∆12/∆15 -fatty acid desaturase gene from Rhodosporidium kratochvilovae. Biotechnol Lett 38:1155–1164. doi:10.1007/s10529-016-2090-7
De Angelis L, Rinaldi T, Cirigliano A, Bello C, Reverberi M, Amaretti A, Montanari A, Santomartino R, Raimondi S, Gonzalez A, Bianchi MM (2016) Functional roles of the fatty acid desaturases encoded by KlOLE1, FAD2 and FAD3 in the yeast Kluyveromyces lactis. Microbiology 162:1435–1445. doi:10.1099/mic0.000315
Hashimoto K, Yoshizawa AC, Okuda S, Kuma K, Goto S, Kanehisa M (2008) The repertoire of desaturases and elongases reveals fatty acid variations in 56 eukaryotic genomes. J Lipid Res 49:183–191. doi:10.1194//jlr.M700377-JLR200
He J, Yang Z, Hu B, Ji X, Wei Y, Lin L, Zhang Q (2015) Correlation of unsaturated fatty acids with the cold adaptation of Rhodotorula glutinis. Yeast 32:683–690. doi:10.1002/yea.3095
Hong H, Datla N, Reed DW, Covello PS, MacKenzie SL, Qiu X (2002a) High-level production of gamma-linolenic acid in Brassica juncea using a delta6 desaturase from Phytium irregulare. Plant Physiol 129:354–362
Hong H, Datla N, MacKenzie SL, Qiu X (2002b) Isolation and characterization of delta5 FA desaturase from Phytium irregulare by heterologous expression in Saccharomyces cerevisiae and oilseed crops. Lipids 37:863–868
Hoppe T, Matuschewski K, Rape M, Schlenker S, Ulrich HD, Jentsch S (2000) Activation of a membrane-bound transcription factor by regulated ubiquitin/proteasome-dependent processing. Cell 102:577–586. doi:10.1016/S0092-8674(00)00080-5
Huerta-Cepas J, Capella-Gutierrez S, Pryszcz LP, Denisov I, Kormes D, Marcet-Houben M, Gabaldón T (2011) PhylomeDB v3.0: an expanding repository of genome-wide collections of trees, alignements and phylogeny-based orthology and paralogy predictions. Nucleic Acid Res 39:D556–D560. doi:10.1093/nar/gkq1109
Huerta-Cepas J, Capella-Gutiérrez S, Pryszcz LP, Marcet-Houben M, Gabaldón T (2014) PhylomeDB v4: zooming into the plurality of evolutionary histories of a genome. Nucleic Acids Res 42:D897–D902. doi:10.1093/nar/gkt1177
Jiang Y, Vasconcelles MJ, Wretzel S, Light A, Martin CE, Goldberg MA (2001) MGA2 is involved in the low-oxygen response element-dependent hypoxic induction of genes in Saccharomyces cerevisiae. Mol Cell Biol 21:6161–6169. doi:10.1128/MCB.21.18.6161-6169.2001
Jiang Y, Vasconcelles MJ, Wretzel S, Light A, Gilooy L, McDaid K, Oh C-S, Martin CE, Goldberg MA (2002) Mga2p processing by hypoxia and unsaturated fatty acids in Saccharomyces cerevisiae: impact on lore-dependent gene expression. Eukaryot Cell 1:481–490. doi:10.1128/EC.1.3.481-490.2002
Kainou K, Kamisaka Y, Kimura K, Uemura H (2006) Isolation of delta12 and omega3-fatty acid desaturase genes from the yeastKluyveromyces lactisand their heterologous expression to produce linoleic and alpha-linolenic acids in Saccharomyces cerevisiae. Yeast 23:605–612
Kajiwara S (2002) Molecular cloning and characterization of the delta9 fatty acid desaturase gene and its promoter region from Saccharomyces kluyveri. FEMS Yeast Res 2:333–339. doi:10.1016/S1567-1356(02)00088-0
Kandasamy P, Vemula M, Oh CS, Chellappa R, Martin CE (2004) Regulation of unsaturated fatty acid biosynthesis in Saccharomyces: the endoplasmic reticulum membrane protein, Mga2p, a transcription activator of the OLE1 gene, regulates the stability of the OLE1 mRNA through exosome-mediated mechanisms. J Biol Chem 279:36586–36592. doi:10.1074/jbc.M401557200
Kimura K, Tomita N, Uemura H, Aki T, Ono K, Kamisaka Y (2009) Improvement of stearidonic acid production in oleaginous Saccharomyces cerevisiae. Biosci Biotechnol Biochem 73:1447–1449
Krishnamurthy S, Plaine A, Albert J, Prasad T, Prasad R, Ernst JF (2004) Dosage-dependent functions of fatty acid desaturase Ole1p in growth and morphogenesis of Candida albicans. Microbiology 150:1091–2003. doi:10.1099/mic.027029-0
Kwast KE, Burke PV, Staahl BT Poyton RO (1999) Oxygen sensing in yeast: evidence for the involvement of the respiratory chain in regulating the transcription of a subset of hypoxic genes. Proc Natl Acad Sci USA 96:5446–5451.
Laoteng K, Mannontarat R, Tanticharoen M, Cheevadhanarak S (2000) Delta6-desaturase of Mucor rouxii with high similarity to plant delta 6-desaturase and its heterologous expression in Saccharomyces cerevisiae. Biochem Biophys Res Commun 279:17–22
Ledesma-Amaro R, Santos M-A, Jiménez A, Revuelta JL (2014) Tuning single-cell oil production in Ashbya gossypii by engineering the elongation and desaturation systems. Biotechnol Bioeng 111:1782–1791. doi:10.1002/bit.25245
Li YT, Li MT, Fu CH, Zhou PP, Liu JM, Yu LJ (2009) Improvement of arachidonic acid and eicosapentaenoic acid production by increasing the copy number of the genes encoding fatty acid desaturases and elongases into Pichia pastoris. Biotechnol Lett 31:1011–1017. doi:10.1007/s10529-009-9970-z
Liu L, Markham K, Blazeck J, Zhou N, Leon D, Otoupal P, Alper HS (2015) Surveying the lipogenesis landscape in Yarrowia lipolytica through understanding the function of a Mga2p regulatory protein mutant. Metabol Eng 31:102–111. doi:10.1016/j.ymben.2015.07.004.
Los DA, Murata N (1998) Structure and expression of fatty acid desaturases. Biochim Biophys Acta 1394:3–15
Lu SF, Tolstorukov II, Anamnart S, Kaneko Y, Harashima S (2000) Cloning, sequencing and functional analysis of H-OLE1 gene encoding delta9-fatty acid desaturase in Hansenula polymorpha. Appl Microbiol Biotechnol 54:499–509
Mallet S, Weiss S, Jacques N, Leh-Louis V, Sacerdot C, Casaregola S (2012) Insights into the life cycle of yeasts from the CTG clade revealed by the analysis of the Millerozyma (Pichia) farinosa species complex. PLoS ONE 7:e35842. doi:10.1371/journal.pone.0035842
Marcet-Houben M, Gabaldón T (2015) Beyond the Whole-genome duplication: phylogenetic evidence of an ancient interspecies hybridization in baker’s yeast lineage. PLoS Biol 13:e1002220. doi:10.1371/journal.pbio.1002220
Martin CE, Oh C-S, Jiang Y (2007) Regulation of long chain unsaturated fatty acids synthesis in yeast. Biochim Biophys Acta 1771:271–285. doi:10.1016/j.bbalip.2006.06.010
McDonough VM, Stukey JE, Martin CE (1992) Specificity of unsaturated fatty acid-regulated expression of the Saccharomyces cerevisiae OLE1 gene. J Biol Chem 267:5931–5936
Meesapyodsuk D, Chen Y, Ng SH, Chen J, Qiu X (2015) Metabolic engineering of Pichia pastoris to produce ricinoleic acid, a hydroxyl fatty acid of industrial importance. J Lipid Res 56:2102–2109. doi:10.1194/jlr.M060954
Meesters PA, Eggink G (1996) Isolation and characterization of a delta-9 fatty acid desaturase gene from the oleaginous yeast Chryptococcus curvatus CBS 570. Yeast 12:723–730
Michaelson LV, Lazarus CM, Griffiths G, Napier JA, Stobart AK (1998) Isolation of Delta5-fatty acid desaturase gene from Mortierella alpine. J Biol Chem 273:19055–19059
Micolonghi C, Ottaviano D, Di Silvio E, Damato G, Heipieper HJ, Bianchi MM (2012) A dual signaling pathway for the hypoxic expression of lipid genes, dependent on the glucose sensor Rag4, is revealed by the analysis of the KlMGA2 gene in Kluyveromyces lactis. Microbiology 158:1734–1744. doi:10.1099/mic.0.059402-0
Mohamed AH, Chirala SS, Mody NH, Huang W-Y, Wakil SJ (1988) Primary structure of the multifunctional α subunit protein of yeast fatty acid synthase derived from FAS2 gene sequence. J Biol Chem 263:12315–12325
Morales L et al (2013) Complete DNA sequence of Kuraishia capsulata illustrates novel genomic features among budding yeasts (Saccharomycotina). Genome Biol Evol 5:2524–2539. doi:10.1093/gbe/evt201
Murayama SY, Negishi Y, Umeyama T, Kaneko A, Oura T, Niimi M, Ubukata K, Kajiwara S (2006) Construction and functional analysis of fatty acid desaturase gene disruptants incandida albicans. Microbiology 152:1551–1558. doi:10.1099/mic.0.28751-0
Nakagawa Y, Sugioka S, Kaneko Y, Harashima S (2001) O2R, a novel regulatory element mediating Rox1p- independent O 2 and unsaturated fatty acid repression of OLE1 in Saccharomyces cerevisiae. J Bacteriol 183:745–751
Nakagawa Y, Sakumoto N, Kaneko Y, Harashima S (2002) Mga2p is a putative sensor for low temperature and oxygen to induce OLE1 transcription in Saccharomyces cerevisiae. Biochem Biophys Res Comm 271:707–713
Nguyen LN, Gacser A, Nosanchuk JD (2011) The stearoyl-coenzyme A desaturase is essential for virulence and membrane stress in Candida parapsilosis through unsaturated fatty acid production. Infect Immun 79:136–145. doi:10.1128/IAI.00753-10
Oh C-S, Martin CE (2006) Candida albicans Spt23p controls the expression of Ole1p ∆9 fatty acid desaturase and regulates unsaturated fatty acid biosynthesis. J Biol Chem 281:7030–7039. doi:10.1074/jbcM510746200
Oh CS, Toke DA, Mandala S, Martin CE (1997) ELO2 and ELO3, homologues of the Saccharomyces cerevisiae ELO1 gene, function in fatty acid elongation and are required for sphingolipid formation. J Biol Chem 272:17376–17384
Ottaviano D, Montanari A, De Angelis L, Santomartino R, Visca A, Brambilla L, Rinaldi T, bello C, Reverberi M, Bianchi MM (2015) Unsaturated fatty acids-dependent linkage between respiration and fermentation revealed by deletion of hypoxic regulatory KlMGA2 gene in the facultative anaerobe-respiratory yeast Kluyveromyces lactis. FEMS Yeast Res 15:fov028. doi:10.1093/femsyr/fov028.
Oura T, Kajiwara S (2004) Saccharomyces kluyverii FAD3 encodes an ω3 fatty acid desaturase. Microbiology 150:1983–1990. doi:10.1099/mic.0.27049-0
Pereira L, Silva S, Ribeiro B, Henriques M, Azeredo J (2015) Influence of glucose concentration on the structure and quality of biofilms formed by Candida parapsilosis. FEMS Yeast Res 15:fov043. doi:10.1093/femsyr/fov043.
Piškur J, Langkjær RB (2004) Yeast genome sequencing: the power of comparative genomics. Mol Microbiol 53:381–389. doi:10.1111/j.1365-2958.2004.04182.x
Qiao K, Imam Abidi SH, Liu H, Zhang H, Chakraborty S, Watson N, Kumaran Ajikumar P, Stephanopulos G (2015) Engineering lipid overproduction in the oleaginous yeast Yarrowia lipolytica. Metab Eng 29:56–65. doi:10.1016/j.ymben.2015.02.005
Sakurdani E, Kobayashi M, Shimizu S (1999) Delta6-fatty acid desaturase from an arachidonic acid-producing Mortierella fungus. Gene cloning and its heterologous expression in a fungus, Aspergillus. Gene 238:445–453
Sangwallek J, Kaneko Y, Tsukamoto T, Marui M, Sugiyama M, Ono H, Bamba T, Fukusaki E, Harashima S (2014) Cloning and functional analysis of HpFAD2 and HpFAD3 genes encoding ∆12- and ∆15-fatty acid desaturases in Hansenula polymorpha. Gene 533:110–118. doi:10.1016/j.gene.2013.09.115
Stewart LC, Yaffe MP (1991) A role for unsaturated fatty acids in mitochondrial movement and inheritance. J Cell Biol 115:1249–1257
Stukey JE, McDonough VM, Martin CE (1989) Isolation and characterization of OLE1, a gene affecting fatty acid desaturation from Saccharomyces cerevisiae. J Biol Chem 264:16537–16544
Toke DA, Martin CE (1996) Isolation and characterization of a gene affecting fatty acid elongation in Saccharomyces cerevisiae. J Biol Chem 271:18413–18422
Vasconcelles MJ, Jiang Y, McDaid K, Gilooy L, Wretzel S, Porter DL, Martin ME, Goldberg MA (2001) Identification and characterization of a low oxygen response element involved in the hypoxic induction of a family of Saccharomyces cerevisiae genes. J Biol Chem 276:14374–14384
Wan X, Zhang Y, Wang P, Huang F, Chen H, Jiang M (2009) Production of gamma-linolenic acid in Pichia pastoris by expression of a delta-6 desaturase gene from Cunninghamella echinulata. J Microbiol Biotechnol 19:1098–1102
Wang M, Chen H, Gu Z, Zhang H, Chen W, Chen YQ (2013) ω3 fatty acid desaturases from microorganisms: structure, function, evolution and biotechnological use. Appl Microbiol Biotechnol 97:10255–10262. doi:10.1007/s00253-013-5336-5
Wang Y, Zhang S, PÓ§tter M, Sun W, Li L, Yang X, Jiao X, Zhao ZK (2016) Overexpression of ∆12-fatty acid desaturasein the oleaginous yeast Rhodosporidium toruloides for production of linoleic acid-rich lipids. Appl Biochem Biotechnol 180:1497–1507. doi:10.1007/s12010-016-2182-9
Watanabe K, Oura T, Sakai H, Kajiwara S (2004) Yeast ∆12 fatty acid desaturase: gene cloning, expression and function. Biosci Biotechnol Biochem 68:721–727
Yu A-Q, Shi T-L, Zhang B, Xing L-J, Li M-C (2012a) Transcriptional regulation of desaturase genes in Pichia pastoris GS115. Lipids 47:1099–1108. doi:10.1007/s11745-012-3712-z
Yu A-Q, Zhu J-C, Zhang B, Xing L-J, Li M-C (2012b) Knockout of fatty acid desaturase genes in Pichia pastoris GS115 and its effect on the fatty acid biosynthesis and physiological consequences. Arch Microbiol 194:1023–1032. doi:10.1007/s00203-012-0835-9
Zhang S, Skalsky Y, Garfinkel DJ (1999) MGA2orSPT23is required for transcription of the delta9 fatty acid desaturase gene, OLE1, and nuclear membrane integrity in Saccharomyces cerevisiae. Genetics 151:473–483
Zhang M, Liu Z, Yu Q, Mao J, Zhang B, Xing L, Li M (2015) Deletion of genes encoding fatty acid desaturases leads to alteration is stress sensitivity in Pichia pastoris. FEMS Yeast Res 15:fov020. doi:10.1093/femsyr/fov020
Acknowledgements
This work was supported by Sapienza Università di Roma (C26A147BSJ) and by Ministero Affari Esteri e Cooperazione Internazionale, Direzione generale per la Promozione del Sistema Paese (MX14MO08, PGR00208 and PGR00209).
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Santomartino, R., Riego-Ruiz, L. & Bianchi, M.M. Three, two, one yeast fatty acid desaturases: regulation and function. World J Microbiol Biotechnol 33, 89 (2017). https://doi.org/10.1007/s11274-017-2257-y
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DOI: https://doi.org/10.1007/s11274-017-2257-y