Abstract
An important characteristic of arbuscular mycorrhizal (AM) symbiosis is the transfer of phosphate (Pi) from AM fungi to plants, and this transfer is facilitated by plasma membrane-spanning phosphate transporter (PT) proteins. Five Nicotiana tabacum PT genes (NtPT), members of Pht1 family, express in the root. However, the ways these genes contribute to the development of AM is unclear. In this study, transcription analysis was performed to study the expression levels of NtPT1–5 genes in tobacco roots. To investigate the expression pattern of these five genes during the development of AM from no inoculation to high colonization, we screened for differentiating transcriptional responses of non-mycorrhizal roots and AM roots by real-time PCR. Our results indicate that only NtPT5 was mycorrhiza-specific phosphate transporter during arbuscular mycorrhizal symbiosis in tobacco roots, and the induction was tightly correlated with the degree of root colonization by Glomus etunicatum. In addition, based on an alignment and analysis of the evolution of Pht1 family members in six solanaceous plants, we developed the evolutionary pattern of the Pht1 gene family members in six solanaceous plants.
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Introduction
Phosphorus is an indispensable nutrient for plants. The phosphorus concentration in soil solution rarely exceeds 10 μM (Schachtman et al. 1998), which limits the growth of plants (Coelho et al. 2010). The rate of absorption of phosphate (Pi) by growing roots is much higher than the rate of soil phosphorus diffusion. As a result, a depletion zone of phosphorus is formed at the root system level in the soil, limiting the supply of phosphorus to plants. However, plants have evolved elaborate mechanisms to facilitate phosphate uptake, including modification of the soil chemistry around the roots, activation of high-affinity phosphate transport with the use of the H+ gradient to drive the transport process, and the formation of symbiotic associations with arbuscular mycorrhizal (AM) fungi (AMF) (Gianinazzi-Pearson et al. 2000; Karandashov and Bucher 2005; Rausch et al. 2001; Seufferheld and Curzi 2010). AM symbiosis is an ancient mutualistic symbiosis that originated more than 400 Ma ago in the roots of plants (Stubblefield et al. 1987). More than 80% of all terrestrial plants live in association with mycorrhizal fungi that facilitate mineral nutrient uptake, particularly phosphorus (Wang and Qiu 2006). The formation of intracellular fungal structures in the root cortex can trigger the expression of symbiosis-inducible phosphate transporters (Karandashov and Bucher 2005). Symbiosis-specific plant phosphate transporter genes have been identified in several plant species, such as tomato and rice (Chen et al. 2007; Drissner et al. 2007; Glassop et al. 2005; Harrison et al. 2002; Liu et al. 1998; Nagy et al. 2005; Paszkowski et al. 2002; Rausch et al. 2001; Wegmueller et al. 2008; Zhao et al. 2003). In addition, symbiosis-specific fungi phosphate transporter genes have been identified in fungi (Harrison and Vanbuuren 1995; Maldonado-Mendoza et al. 2001). With the growing number of PT sequences from different plant species, investigators have grouped PTs into three families Pht1, Pht2, and Pht3. Pht1 proteins are localized in the plasma membrane, whereas Pht2 and Pht3 proteins are localized in the inner envelope of plastids and mitochondria, respectively (Bucher 2007; Karandashov and Bucher 2005; Mudge et al. 2002). To date, all the symbiosis-specific plant phosphate transporter genes belong to the Pht1 family (Karandashov and Bucher 2005).
Tobacco (Nicotiana tabacum L.) is a plant with AM symbiosis, and it has been widely investigated (Branscheid et al. 2010; Diao et al. 2011; Gianinazzi-Pearson et al. 2000; Liu and Wang 2003; Muller and Dulieu 1998; Viswanathan et al. 2011). In tobacco, neither Pht2 nor Pht3 genes are expressed in the roots (Chen et al. 2007). Five phosphate transporter genes belonging to the Pht1 family (also named as NtPht1;1–5, Chen et al. 2007) have already been cloned: NtPT1 (GenBank accession number AB020061) and NtPT2 (AB042950 or AF156696) (Baek et al. 2001), NtPT3 (AB042951 or TEF091669) and NtPT4 (AB042956 or TEF091672) (Kai et al. 2002), and NtPT5 (EF091675) (Chen et al. 2007). All of the transcripts of NtPT1–5 have been detected in tobacco roots (Chen et al. 2007; Kai et al. 2002). They are highly similar to known high-affinity phosphate transporters in higher plants. There is a 99.8% identity of mRNA sequences between NtPT1 and NtPT2 and 99.6% identity of amino acid sequences between NtPT1 and NtPT2, which differ in only two amino acids. The expression of NtPT1 increases in both the leaves and roots under P-starvation conditions. The expression of NtPT2 decreases in roots under P-depletion conditions, expression of NtPT3 is enhanced with mycorrhiza, and expressions of NtPT4 and NtPT5 are induced by mycorrhiza (Chen et al. 2007). However, the roles of these genes in the development of AM remain unknown, and the expression pattern of each NtPT corresponding to the development of AM in roots is unclear.
It takes several days for AM to develop from no colonization to high colonization (Wenkart et al. 2001). However, to our best knowledge, there is no report about the pattern of PT expression levels in time course of AM development. The aim of this work is to reveal the pattern of NtPT1–5 transcript expression throughout the process of colonization in tobacco roots. In addition, we try to reveal the evolutionary pattern of Pht1 family members in six solanaceous plants.
Materials and Methods
Plant Material and Cultivation Conditions
Tobacco (N. tabacum L. cv. Wisconsin 38, W38) seeds were washed with sterile water and immersed in 0.1% mercuric chloride for 5 min, followed by four washes with sterile water. These seeds were germinated in a sterilized mixture of vermiculite/nutritive soil in a ratio of 3:1. The P concentration of the mixture was 2.75 mg L−1. The seeds or plantlets were watered every 3 days with sterile water. After 20 days, the plantlets were split and the strong and uniform seedlings were selected to be cultured in 18 cm pots filled with sterilized soil (vermiculite/nutritive soil ratio of 3:1). The plants were grown in a greenhouse (light/dark rhythm of 14:10 h and 28:22°C).
AM Fungal Inoculum
Fifteen days after splitting, the uniform plantlets were transplanted to sterilized soil and inoculated with Glomus etunicatum (BEG 168). The control plants were transplanted to sterilized soil without inoculation. The inoculum consisted of soil, spores (the spore density was 10,000 per 10 g inoculum), hyphae, and infected root fragments from a stock culture of G. etunicatum. Every 1 kg of sterilized soil was inoculated with 20 g inoculum for mycorrhizal treatments or 20 g sterilized (autoclaved) inoculum for the non-mycorrhizal control treatment. The mycorrhizal and sterilized inocula were mixed with sterilized soil.
Detection of AMF Colonization
The root samples were carefully washed under running water to remove soil. Roots were immersed in 10% KOH at 100°C for 15 min and then washed with water three times. The samples were stained with 0.05% (w/v) trypan blue for 5 h, rinsed several times, and destained overnight in 50% lactic acid (Phillips and Hayman 1970; Vierheilig et al. 2005). They were then stored in lactic acid, glycerol, and water (1:1:1, by volume). We looked for AM colonization under a microscope (Olympus BX40, Japan), using the magnified line-intersect method (McGonigle et al. 1990), counting at least 150 intersect points of presence or absence of colonization in each sample. Pictures were captured by microscope (Axioskop 2 plus, Zeiss, Germany). A rate of colonization of 100% would indicate that the root was colonized by the fungus throughout its length as shown by arbuscules or intraradical hyphae (Biermann and Linderman 1981).
P Content Measurement
Leaf P concentration was determined by the molybdenum blue method (Fogg and Wilkinson 1958) after the plant material was digested by H2SO4. Briefly, dry leaf amounts corresponding to 5 g of fresh weight were used for each extraction. Leaves were oven dried to constant weight at 80°C for approximately 40 h. Dry tobacco leaf (0.5 g) was digested with 4 ml of 98% H2SO4 and 20 μl H2O2 for 10 h. The digested sample was then diluted to 20 ml with distilled water. The samples were filtrated with quantitative filter paper (ashless grade 40 filter papers for medium speed and retention). The P concentration in the solution was measured with the absorbance read at 450 nm on a 722 UV–visible spectrophotometer (UNICO UV-2100, Shanghai, China).
RNA Extraction and RT-PCR
Approximately 0.5 g fresh root of tobacco was gathered, and total RNA was isolated using TRIzol reagent (Invitrogen, USA). After the extraction, total RNA was digested by DNase I (TaKaRa, Japan) in 37°C for 2 h. Reverse transcription was performed using M-MLV reverse transcriptase (Promega, USA) in a reaction volume of 25 μl containing 1× PCR buffer, 1 mM dNTPs, 0.5 mM oligo(dT)B18B, and 1 U RNase inhibitor (TaKaRa). The reactions were bathed for 2 h in water at 37°C. The reverse transcription production was checked by PCR with primers of NtActin (Chen et al. 2007) to ensure the production was successful. Amplified NtActin fragments were detected by electrophoresis on 1% (W/V) agarose gel and visualized by ethidium bromide staining. PCR reactions were also performed with non-reverse transcribed total RNA to exclude fragment amplification because of the presence of genomic DNA in the samples.
Quantitative Real-Time RT-PCR
To detect the expressions of NtPT1–5, we used real-time RT-PCR due to its accuracy, sensitivity, and reproducibility (Li et al. 2010; Qi et al. 2010). The primer design for real-time PCR was performed with the software Beacon Designer 7.0 (PREMIER Biosoft International, Palo Alto, CA, USA). All primers were designed according to same criteria, including a nearly equal annealing temperature (Table 1). All primers were tested by real-time PCR, and amplification was sequenced to ensure accuracy. Each primer pair produced a single product and amplified the target transcript with equal efficiency over a 1,000-fold range of cDNA templates diluted to a ratio of 1:10. Real-time PCR was performed on the Chromos 4 (Bio-Rad) using the SYBR Green PCR Master Mix (TOYOBO, Japan). The PCR reaction consisted of 10.0 μl of the Mix, 300 nM of forward and reverse primers, and 6.0 μl of 1:10-diluted template cDNA, added to deionized water for a total volume of 20.0 μl. Cycling was performed using the conditions specified by Opticon Monitor Software 3.0 and programmed with the following sequence of parameters: 1 min at 95°C, followed by 40 cycles of 20 s at 95°C, 20 s at 60°C and 20 s at 72°C, an incubation at 72°C for 5 min with a melting curve from 55°C to 95°C, readings every 1.0°C, and a hold for 2 s (Andersen et al. 2004; Gupta et al. 2011).
Data Analysis
To analyze relative gene expression data, it is suggested to adopt 2−ΔΔC(t) method (Schmittgen and Livak 2008). The experimental data were subjected to correlation analysis and one-way analysis of variance (ANOVA). Differences between means of variables were examined by the standard t test for independent samples. Statistical significance for all analyses was accepted at the P < 0.05 level of probability. Statistical analyses were performed using Excel 2003 software (Microsoft Office).
Results
Shoot Biomass Increase and P Concentration Stabilization
The plants were harvested from 0 to 40 days after inoculation (DAI). We measured the weight of shoots (stalk plus the leaves) and the P concentration of leaves (Table 2). At 40 DAI, shoot dry weight was statistically significantly greater in AM plants than that in non-mycorrhizal (NM) plants (P < 0.05) (Table 2). In contrast, there was no significant difference in shoot biomass from 0 to 30 DAI, but suggesting that AM could have effect after a period of time to accumulate and eventually appear significant difference.
Plants colonized by G. etunicatum had similar leaf phosphorus concentrations compared with NM plants. There was no significant difference in leaf P concentration from 0 to 40 DAI between NM and AM plants (one-way ANOVA, P < 0.05). Leaf phosphorus concentrations consistently ranged from 0 to 40 DAI in both AM tobacco and non-AM tobacco.
AM Root Colonization Increased Continuously
The plants were harvested at 0, 5, 10, 15, 20, and 40 DAI (Fig. 1). Few intracellular hyphae were seen in cortical cells at 5 DAI (Fig. 1b). Intracellular hyphae increased noticeably from 5 to 20 DAI and completely covered the surface of tobacco root cells at 40 DAI (Fig. 1f). To evaluate the state of root colonization, we calculated the percentage of mycorrhizal coverage at each post-harvest interval (Fig. 2). The percent colonization (mean ± SD) increased rapidly from 5 to 40 DAI. The percent colonizations were 0%, 0.5%, 15%, 45%, 57%, and 73% for each of the six post-harvest intervals (Fig. 2). At 40 DAI, plants inoculated by G. etunicatum appeared to have the highest percent colonization.
Relative Expressions of NtPT1–5 Show Different Changes
Real-time RT-PCR results showed the relative expression levels of NtPT1 changing little from 0 to 40 DAI. At 10, 15, and 40 DAI, the relative expression of NtPT1 increased slightly. At other time intervals, it hardly changed (Fig. 3a). Relative expression levels of NtPT2 were significantly higher in AM plants than in NM plants at 10 and 15 DAI. However, its expression changed only slightly at other time intervals (Fig. 3b). Relative expression levels of NtPT3 did not change from 0 to 10 DAI but increased at each interval from 15 to 40 DAI. They enhanced 4-, 3-, and 6-fold at 15, 20, and 40 DAI, respectively (Fig. 3c). Relative expression levels of NtPT4 increased 5- and 3-fold at 10 and 40 DAI, respectively, but showed almost no change at the other intervals (Fig. 3d). It was special for the pattern of relative expression of NtPT5. Its relative expression changed from 0 to 40 DAI, with consistent, acute increases at every interval. It experienced more than a tenfold increase from 0 to 15 DAI, and a relatively slower increase from 15 to 40 DAI. It did, however, increase at each interval from 0 to 40 DAI: 0-, 23-, 215-, 4,081-, 5,183-, and 6,745-fold (Fig. 3e). Relative expressions of NtPT1–5 showed different changes. A positive correlation has been shown between the increase in percent colonization of tobacco by AMF and the increased level of NtPT5 expression (Fig. 3f).
The Phylogenetic Tree of Pht1 in Solanaceous Plants
To review the Pht1 family members associated with Solanum, we clustered all PT of Solanum to produce the solanaceous phylogenetic tree (Fig. 4). At least five differently expressed Pht1 genes are present in six solanaceous plants: potato (Solanum tuberosum), tobacco, tomato (Lycopersicon eseulentum), eggplant (Solanum melongena), pepper (Capsicum frutescens), and petunia (Petunia hybrida) (Chen et al. 2007; Kai et al. 2002; Wegmueller et al. 2008). Based on the solanaceous phylogenetic tree, PT4-5 was a main cluster, and PT1–3 was another main cluster. The PT4–5 cluster divided into PT4 and PT5. PT1–3 divided into the PT2 sub-cluster and the PT1–PT3 sub-cluster. PT1–PT3 sub-cluster eventually branched off to PT1 and PT3. However, NtPT2 was highly homologous with solanaceous PT1. Our data are consistent with the hypothesis that different PT are induced by AM in different plant species and that the Pht1 family of solanaceous plants has undergone consistent evolution.
Discussion
P Uptake Is Complicated in Plant Roots
In this article, we investigated tobacco root colonization, shoot biomass, and transcriptional activities of genes NtPT1–5 after inoculation with G. etunicatum. It was clear that colonization of the roots increased continuously from 0 to 40 DAI. AM developed in the roots of tobacco normally and had nearly saturated colonization at 40 DAI. Mycorrhizal tobacco had more biomass compared to non-mycorrhizal tobacco at 40 DAI (Table 2). Most previous studies have supported the findings that AM can increase host biomass (Hartwig et al. 2002; Zhu et al. 2010). However, tobacco leaf P concentration was not significantly different between the AM plants and NM plants.
Based on our results, P concentration in the soil may influence plant P uptake. If tobacco is cultured in soil with lower P concentrations, the plant P concentration may be significantly different between NM plants and AM plants. We conjectured that the contribution of the direct uptake pathway and the mycorrhizal uptake pathway to total P uptake would vary dramatically in response to different stages of tobacco development. Mycorrhizal roots had a wider available P zone than NM tobacco, allowing for a higher P uptake efficiency (Seufferheld and Curzi 2010). Finally, mycorrhizal tobacco was able to more quickly access nutrients, including P, in response to plant growth. This ability gave mycorrhizal tobacco a significantly higher biomass with no difference in P concentration compared to non-mycorrhizal tobacco. We presume that difference in P concentration will be magnified if we measure it in the later. Similar conclusion was drew in Lolium perenne that AMF increased plant biomass significantly but did not increase P concentration (Hartwig et al. 2002).
NtPT5 Was Mycorrhiza-Specific Gene
During the course of AM development in tobacco roots, we detected a change in the expressions of NtPT1–5 according to the progress of AMF colonization. In our study, NtPT5 did not express in tobacco roots at 0 DAI, and it increased from 5 to 40 DAI in parallel with the development of AM. Previous similar studies have showed that the PT induced by AM was expressed only in the root cortical cells containing arbuscules (Siciliano et al. 2007; Wegmueller et al. 2008). The expressions of LePT3 and LePT4 have been used as molecular markers for the transfer of P from AMF to tomato plants, irrespective of the magnitude of plant response (Poulsen et al. 2005). Based on our results, we concluded that NtPT5 was mycorrhiza-specific phosphate transporter. However, our results differed in some ways from other previous works (Chen et al. 2007, 2011). Chen et al. (2007) analyzed the expression patterns of phosphate transporters in solanaceous species, including tobacco. This research demonstrated that mycorrhiza-enhanced expression was increased 6- to 21-fold for NtPT3, 153- to 1,250-fold for NtPT4, and 50- to 325-fold for NtPT5 2 months after colonization under reduced-phosphate conditions. The difference could be explained by the use of different AMF inoculants. In our experiment, we used G. etunicatum, whereas Chen et al. (2007, 2011) used G. intraradices.
Different species may show different influences in the expression of genes in tobacco roots. Similarly, it has been shown that different AMF have functional diversity not only at the level of mycorrhiza formation, plant nutrient uptake, and plant growth but also at the molecular level in the expression of plant genes in roots involved in plant P starvation response (Lopez-Raez et al. 2010). Under the same experimental conditions, G. mosseae promoted the expression of MtPT2 and MtPT4 in Medicago truncatula, while Gigaspora rosea depressed the expression of both (Burleigh et al. 2002). Plants can respond differently to AMF, not only at the level of colonization, nutrient uptake, and growth but also at the level of gene expression (Branscheid et al. 2010; Feddermann et al. 2008; Grunwald et al. 2009).
Through continuous detection of the spreading colonization of tobacco roots and the expression of the phosphate transfer genes involved in the development of AM, our results revealed that NtPT5 may be the only mycorrhiza-specific phosphate transfer gene. The expression of NtPT5 was enhanced in conjunction with the development of AM. We propose that plants may balance the expression level among all PT genes in response to internal and external conditions.
The Evolutional Mechanism of Pht1 Family Members in Solanaceous Plants
Based on the solanaceous phylogenetic tree, Pht1 family members in solanaceous plants showed some regular evolutional mechanisms (Fig. 4). PT4–5 is a main cluster and PT1–3 is another main cluster. The PT4–5 cluster divides into PT4 and PT5, while PT1–3 divides into the PT2, PT1, and PT3 sub-clusters. The PT1 and PT3 sub-clusters divide into PT1 and PT3, respectively. Our data are consistent with previous research on LePT and StPT (Nagy et al. 2005). Interestingly, NtPT2 was highly homologous with six solanaceous plants PT1. Analysis of the amino acid sequences of NtPT1 and NtPT2 demonstrated only two different amino acids between them. The pattern of Pht1 in solanaceous plants could reflect a long period of evolution.
Mycorrhiza was an ancient symbiosis dating to 400 Ma ago, as shown in the fossil record (Stubblefield et al. 1987). Plants and mycorrhizal fungi have undergone co-evolution with corresponding adaptations. Changes in plant root structure and function, including PT gene activity, facilitated P transfer in the newly established plant–fungus interaction (Bonfante and Genre 2008; Glassop et al. 2005; Paszkowski et al. 2002). New genes were generated via gene duplication events during evolution (Hurles 2004). The subsequent changes in regulatory and coding sequences of new genes brought new characters and novel subfunctions (Force et al. 1999). Based on this theory, Nagy et al. (2005) set up the proposed series of gene duplications that led to the formation of potato and tomato Pht1 gene families and postulated that the LePT4/StPT4 group ultimately evolved to be strictly expressed in AM. Our work verifies this hypothesis for the solanaceous plant Pht1 gene family phylogenetic tree. Five of the six PT genes in solanaceous plants had similar evolutionary mechanisms, with the exception of NtPT1. However, previous research as well as our study results disagree with the hypothesis that the expressions of solanaceous PT4 genes were induced by AM (Drissner et al. 2007; Karandashov and Bucher 2005; Nagy et al. 2005; Rausch et al. 2001). The difference may result from different study conditions, such as different plant varieties or AMF (Burleigh et al. 2002).
In summary, a time-course experiment was conducted to characterize the kinetic changes of NtPT1–5 expressions parallel to colonization from 0 to 40 DAI in wild-type tobacco roots. Our results show that NtPT5 may be the only mycorrhiza-specific PT gene and its induction is tightly correlated with the degree of root colonization by G. etunicatum. Additionally, we revealed the evolutionary pattern of the Pht1 family in six solanaceous plants. Our results support the theory on the proposed series of gene duplications that led to the formation of the solanaceous plants’ Pht1 family (Nagy et al. 2005). However, further investigation needs to carry out not only at plant nutrient uptake and plant growth but also the expression of NtPT1–5 genes in tobacco roots involved in plant P starvation response.
Abbreviations
- AM:
-
Arbuscular mycorrhizal
- AMF:
-
Arbuscular mycorrhizal fungus
- P:
-
Phosphorus
- PT:
-
Phosphate transporter
- W38:
-
Wisconsin 38
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Acknowledgments
We thank Dr. Xinglong Gu at Cold Spring Harbor Laboratory, NY, USA, for helpful comments on the text and English revision. This work was supported by the National High-Tech Research Project of China (863 plan) under grant nos. 2007AA021403 and the National Transgenic Crop Research Project of China under grant nos. 2008ZX0811-005 and 2009ZX08004-003B.
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Tan, Z., Hu, Y. & Lin, Z. Expression of NtPT5 Is Correlated with the Degree of Colonization in Tobacco Roots Inoculated with Glomus etunicatum . Plant Mol Biol Rep 30, 885–893 (2012). https://doi.org/10.1007/s11105-011-0402-6
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DOI: https://doi.org/10.1007/s11105-011-0402-6