Abstract
The synthesis and the structural properties of a chiral macrocyclic cyclooctatetracontaphane host are reported. The macrocycle is obtained by cyclization of six molecules of terephthalic acid and six molecules of enantiopure α,α′-(bistrifluoromethyl)-9,10-anthracendimethanol. The later is known for its enantioselective interaction with different organic molecules and is used as effective chiral solvating agent for pharmaceutic mixtures. Experimental NMR diffusion data of the chiral macrocycle reveal a predominant conformation in solution with a cavity, suitable for host–guest interactions. This result is confirmed by theoretical calculations using molecular dynamics.
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The design and synthesis of artificial receptors is a central element in supramolecular chemistry to understand the fundamental principles of molecular recognition. Macrocycles are the largest group of synthetic receptors studied due to their special ability to form host–guest complexes, and they are extensively applied in highly diverse areas of chemistry and biochemistry [1–12].
Besides the relatively strong and often dominant hydrogen bonding, ion pairing, and hydrophobic effects in aqueous media, the arene-arene interactions seem to be particularly important for the formation of supramolecular complexes when aromatic rings are present [13]. Thus, macrocycles consisting of a cavity surrounded by several aromatic residues have proven to be highly versatile receptors for aromatic guests [14, 15].
On the other hand, chiral macrocycles are also of special interest as they are capable of selectively binding enantiomers, imitating molecular recognition in biological systems. A variety of chiral macrocycles have been synthesized and studied for their enantiomeric recognition abilities [16–22]. However, most of these cycles are relatively small and as the diameter of the ring becomes larger, the macrocycle becomes more flexible and host–guest interactions are more difficult [23]. To prevent a collapse of large-volume structures, the backbone must be made of rigid components, usually aromatic segments.
In this context, we report here the synthesis of the symmetric macrocycle 1 (Fig. 1) consisting of 6 units of terephthalic acid and of α,α’-(bistrifluoromethyl)-9,10-anthracendimethanol 2. The special ability of 2 in complexing selectively with chiral organic aromatic compounds has been shown by recent studies [24]. Furthermore, the aromatic components of 1 will help the macrocycle to remain rigid and we expect 1 to have interesting host–guest complexing properties.
Experimental section
Synthesis of di-{(R,R)-1-[10-(1-hidroxy-2,2,2-trifluoroethyl)-9-anthryl]-2,2,2-trifluoroethy} terephthalate 3
Terephthaloyl chloride (271 mg, 1.3 mmol) was added to a solution of (R,R)-α,α’-(bistrifluoromethyl)-9,10-antracendimethanol 2 (1.00 g, 2.7 mmol), Et3 N (0.5 ml, 3.2 mmol) and DMAP (33 mg, 0.3 mmol) in anhydrous CH2Cl2 (150 ml) under nitrogen. The reaction mixture was stirred for 2 hours at ambient temperature and then treated with 1 M HCl (120 ml), 1 M NaHCO3 (120 ml) and a saturated solution of NaCl (120 ml). The organic phase was dried over MgSO4 and the volatiles where removed under reduced pressure. Purification of the product using silica gel flash chromatography (eluent EtOAc/hexane, 10:1) gave diester (R,R,R,R)-3 (700 mg, 60%) as a white solid: mp 202-210°C; \( \left[ \alpha \right]_{\text{D}}^{20} + 1 60 \left( {c 1.0,{\text{ CHCl}}_{ 3} } \right); \) IR (ATR) cm−1 : 3250, 1738, 1258, 1178, 1128, 1087, 1026, 867, 763, 723, 644; 1H NMR (500 MHz, acetone-d6, 250 K) δ (cisoid): 9.34 (d, J 8′c,7′c = 9.28 Hz, 1H, H8′c), 9.05 (d, J 8c,7c = 9.01 Hz, 1H, H8c), 8.80 (d, J 1c,2c = 9.2 Hz, 1H, H1c), 8.55 (d, J 1′c,2′c = 9.2 Hz, 1H, H1’c), 8.41 (s, 4H, H14), 8.29 (q, J 11c,F = 8.1 Hz, 1H, H11c), 7.84 (dd, J 2c,7′c = 9.2 Hz, J 2c,1c = 9.2 Hz, 1H, H2c), 7.73 (dd, J 7c,2′c = 9.1 Hz, J 7c,8c = 9.0 Hz, 1H, H7c), 7.7 (dd, J 7′c,2c = 9.2 Hz, J 7′c,8′c = 9.3 Hz, 1H, H7′c), 7.68 (dd, J 2′c,7c = 9.1 Hz, J 2′c,1′c = 9.2 Hz, 1H, H2’c), 7.11 (m, 2H, HOH), 6.68 (q, J 11′c,F = 8.3 Hz, 1H, H11′c) δ (transoid): 9.29 (d, J8′t,7′t = 9.28 Hz, 1H, H8’t), 9.04 (d, J 8t,7t = 8.84 Hz, 1H, H8t), 8.89 (d, J1t,2t = 9.1 Hz, 1H, H1t), 8.65 (d, J 1′t,2′t = 9.1 Hz, 1H, H1′t), 8.41 (s, 4H, H14), 8.34 (q, J 11t,F = 8.1 Hz, 1H, H11t), 7.87 (dd, J 2t,2′t = 9.1 Hz, J 2t,1t = 9.1 Hz, 1H, H2t), 7.78 (dd, J 2′t,2t = 9.1 Hz, J 2′t,1′t = 9.1 Hz, 1H, H2′t), 7.71 (dd, J 7t,7′t = 9.2 Hz, J 7t,8t = 8.8 Hz, 1H, H7t), 7.58 (dd, J 7′t,7t = 9.2 Hz, J 7′t,8′t = 9.3 Hz, 1H, H7’t), 7.11 (m, 2H, HOH), 7.04 (qt, J 11′t,F = J 11’t,OH = 8.6 Hz, 1H, H11’t); 13C NMR (500 MHz, acetone-d6, 250 K) δ (cisoid): 163.09 (C12c), 162.97 (C12t), 132.74 (C13c), 132.72 (C13t), 131.78, 131.10, 131.01, 130.81 (C1′ac,C8′ac,C1′at i C8′at), 130.66, 130.53, 130.33, 129.67 (C10c, C10′c, C10t and C10’t), 129.22, 129.12, 129.08, 128.99 (CF3c, CF3′c, CF3t and CF3′t), 130.20 (C14), 128.86 (C8′c), 128.68 (C8′t), 127.25 (C2c), 126.98 (C2t), 126.43 (C7c), 126.37 (C7t), 126.23 (C8c), 126.08 (C8t), 125.67 (C2′), 124.74 (C7′c), 124.53 (C7′t), 124.15 (C1′t), 124.12, 123.94, 123.29, 123.16 (C1ac, C8ac, C1at and C8at), 123.91 (C1′c), 123.70 (C1t), 122.87 (C1c), 70.37 (C11c i C11t), 68.83 (C11’c), 68.61 (C11’t). MALDI-TOF (THF-cca), m/z, %: 878 (M, 44), 522 (16), 423 (16), 399 (16), 356 (100).
Synthesis of macrocycle 1
Terephthaloyl chloride (162 mg, 0.8 mmol) dissolved in anydrous CH2Cl2 (50 ml) was added drop-wise to a solution of di-{(R,R)-1-[10-(1-hidroxy-2,2,2-trifluoroethyl)-9-anthryl]-2,2,2-trifluoroethy} terephthalate 3 (700 mg, 0.8 mmol), Et3 N (0.12 ml, 0.8 mmol) and DMAP (20 mg, 0.16 mmol) in anhydrous CH2Cl2 (250 ml) under nitrogen. The reaction mixture was stirred for 5 hours at ambient temperature and then treated with 1 M HCl (120 ml), 1 M NaHCO3 (120 ml) and a saturated solution of NaCl (120 ml). The organic phase was dried over MgSO4 and the volatiles where removed under reduced pressure. Purification of the product using silica gel flash chromatography (CH2Cl2/hexane, 1:3) gave macrocycle 1 (160 mg, 20%) as a white solid: mp 270-275 °C; \( \left[ \alpha \right]_{\text{D}}^{20} + 1 80 \left( {c 1.0,{\text{ CHCl}}_{ 3} } \right); \) IR (ATR) cm−1 : 3054, 2360, 1740, 1264, 1234, 1185, 1134, 1091, 1016, 895, 736, 705. 1H NMR (500 MHz, acetone-d6, 298 K) δ: 9.09 (m, 6H, H8t), 9.03 (m, 6H, H8c), 8.91 (m, 6H, H1t), 8.82 (m, 6H, H1c), 8.36 (m, 12H, H11), 8.35 (s, 24 H, H14), 7.84 (m, 12H, H2t i H2c), 7.73 (m, 12H, H7t i H7c); 13C NMR (500 MHz, acetone-d6, 298 K) δ: 164.0 (C12), 133.7 (C13), 132.4, 131.9, 131.2, 130.8 (C1ac,C8at,C1at i C8ac), 131.2 (C14), 129.6 (CF3), 128.5 (C7c i C7t), 127.5 (C8c i C8t), 126.8, 126.5 (C2c i C2t), 124.8, 124.5 (C1c i C1t), 124.0 (C9), 71.0 (C11c i C11t); MALDI-TOF (THF-cca), m/z, %: 3024.9 (M, 44), 2520 (60), 2012 (60).
Diffusion
The measurement of D was made using bipolar-gradient LED pulse sequence [25], using Δ = 0.2 s and δ = 0.001 s. For each experiment, sine-shaped pulsed-field gradients were incremented from 2 to 95% of the maximum strength in 16 spaced steps. The temperature regulation system eurotherm VT-3000 supplied by the manufacturer was used and maximum oscillations of ±0.2 K were permitted. Sample spinning of 20 Hz was used for minimizing convection effects [26].
Computational calculations
All molecular dynamics calculations were realized with AMBER 7 [27, 28], using the parm99 [29] force field and the solvent simulations were carried out in chloroform. SHAKE [30, 31] procedures were used to limit the stretching of all atoms and the degree of thermal coupling was varied to avoid a blow up. The geometric minimization conditions were the standard from Amber 7. A maximum of 10,000 steps and 2 minimizations methods were selected: the first 10 steps are done by the Steepest Descent Method [32] and than the Conjugated Gradient Method [33–35] is used to reach convergence. Molecular dynamics of the macrocycle where done in 2 steps: a) heating and equilibration and b) sampling of the system in equilibrium.
Results and discussion
Chiral macrocycle 1 was prepared via a two-step sequence starting from commercial enantiopure α,α′-(bistrifluoromethyl)-9,10-anthracendimethanol 2 and terephthaloyl chloride. The first step was for diester 3 to be formed (Fig. 1) in 60% yield employing standard esterification conditions.
The isolated diester reacted with another equivalent of terephthaloyl chloride forming a mixture of different polymeric compounds from where macrocycle 1 was easily separated by column chromatography in 20% yield. The mass of the macrocycle was confirmed by Maldi-Tof Mass Spectroscopy.
A conformational analysis of the macromolecule using molecular dynamics simulations (AMBER 7 [27, 28] with the parm99 force field [29]) was performed to get a better idea of the geometry of the cycle. The calculations were carried out first in vacuum and than in the presence of solvent molecules (CHCl3), obtaining a different result for each case. In vacuum, the cycle adopts a completely folded conformation, enhanced by intramolecular hydrogen bonding and π-stacking interactions (Fig. 2).
On the other hand, in the presence of a non-protic solvent, different low-energy unfolded conformations were found, leaving an open cavity for host–guest interactions. Cavity sizes were comprised between 700 and 990 Å3, and the dimension of the cavity changed between 20 × 10 Å (biggest) and 14 × 10 Å (smallest).
Figure 3 shows the superimposed structures from the molecular dynamics simulation, and it is clear that in the presence of solvent, macrocycle 1 becomes more flexible, but without folding.
In order to further validate these results and study the properties of the macrocycle in solution, we used NMR Diffusion Spectroscopy [36, 37] that has been successfully used in supramolecular organic chemistry [38]. Diffusion coefficients (D) are experimentally determined by monitoring the signal intensity decay in a pulsed-field gradient spin-echo experiment spectrum as a function of the overall gradient strength [39]. The experimental D values can be related to molecular constraints such as molecular size, molecular weight, and hydrodynamic radius.
In a diffusion NMR experiment using sinusoidal shaped gradients, the signal intensity of a given resonance decays as given in Equation [1]
where Ag and A0 are the signal intensities in the presence and absence of pulsed-field gradients (PFG), respectively, γ is the gyromagnetic ratio (rad s G−1), g is the strength of the diffusion gradients (G cm−1), D is the diffusion coefficient of the observed spins (cm2 s−1), δ is the length of the diffusion gradients (s), and Δ is the time separation between the leading edges of the two diffusion pulsed gradients (s) [40]. Diffusion coefficients were obtained by measuring the slope in the following relationship:
Diffusion coefficients (D) of macrocycle 1, and of the parent compounds 2 and 3 were experimentally measured under identical conditions (Fig. 4). As expected, D decreases as the size of the molecule increases, owing to the fact that large molecules move slower in solution.
The Stokes–Einstein equation allows us to relate the D values to the corresponding hydrodynamic radius. The theoretical radii of gyration of 1, 3 and 2, obtained from the low energy conformations in presence of solvent, are 15 Å, 7 Å and 4 Å, respectively (Table 1).
Assuming that temperature and viscosity remain invariable in all experiments, the following relationship between the diffusion coefficients and the hydrodynamic radius of the three molecules can be established: D1:D3:D2 = 1/R1:1/R2:1/R3. From the diffusion coefficients displayed in Table 1, the experimental relationship between the radius R1:R3:R2 is 4:1.7:1 which is in strong agreement with the theoretical 3.8:1.8:1 ratio. The experimental hydrodynamic radius of macrocycle 1 is four times the hydrodynamic radius of 2. In vacuum, on the other hand, the radius of 1 is much smaller, and the theoretical relationship is completely different (2.4:1.8:1) discarding the presence of a folded conformation in solution.
Conclusion
The coherence between computational calculations in solution and the experimental data confirms the hypothesis that macrocycle 1 adopts a non-folded conformation with an open cavity. This is an interesting result as it means that we have managed to synthesize a large macrocycle, with an available cavity, but with enough flexibility to adapt to guest molecules.
Furthermore, the chirality of 1 (with 12 defined chiral centres) will allow enantiodiscrimination between both enantiomers of a chiral guest molecule.
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Palomino-Schätzlein, M., Burusco, K.K., Parella, T. et al. Synthesis and structural characterization of a new chiral macrocycle derived from α,α′-(bistrifluoromethyl)-9,10-anthracendimethanol and terephthalic acid. J Incl Phenom Macrocycl Chem 65, 419–426 (2009). https://doi.org/10.1007/s10847-009-9584-z
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DOI: https://doi.org/10.1007/s10847-009-9584-z