Introduction

Class II transposable elements (or DNA TEs) have terminal inverted repeats (TIRs) at both ends and are able to transpose into other regions of the genome through DNA intermediates, using a “cut-and-paste” system. Autonomous elements encode a transposase (TPase) that catalyzes their transposition, whereas non-autonomous elements retain the TIRs but do not encode a TPase, and therefore require the presence of an autonomous element for transposition. Maize Dissociation (Ds) was the first non-autonomous class II TE to be identified. Transposition of Ds requires the autonomous element Activator (Ac) (reviewed in Kunze and Weil 2002).

When TPases insert TEs into target DNA, target site duplications (TSDs) are formed on both sides of the TIRs. Classification of class II TEs into superfamilies is based on the sequence similarities of TPases and TIRs and on the length of the TSDs produced. The hAT superfamily TEs Ac/Ds of maize, hobo of Drosophila melanogaster and Tam3 of Antirrhinum majus have similar TPases and TIRs, and are associated with 8-bp TSDs (Calvi et al. 1991).

Miniature inverted-repeat transposable elements (MITEs) are very short, non-autonomous, class II elements. While copy numbers of other class II elements are relatively low, MITEs are often found in high copy numbers in their host genome. The first reported MITE was identified as a small insertion in the waxy (Wx) gene of maize, and was subsequently shown to belong to a large family of MITEs called Tourist (Bureau and Wessler 1992). Since then, researchers have identified various types of MITEs in many plant and animal genomes. MITEs are characterized by their very short lengths (<600 bp) and the possession of TIRs flanked by TSDs. They have been classified into several superfamilies based on the structural features of their TIRs and TSDs (Feschotte et al. 2002).

Several studies have demonstrated the active transposition of the MITE mPing in the rice genome (Jiang et al. 2003; Kikuchi et al. 2003; Nakazaki et al. 2003), but the mechanisms responsible for the mobilization and amplification of MITEs remain poorly understood. Since MITEs lack coding sequences, their mobilization requires TPase encoded in trans, and autonomous elements related to specific MITEs have been identified. For example, the maize Tourist-like MITE miniature PIF (mPIF) shares several features with the autonomous element PIFa, including identical TIRs, similar subterminal sequences and similar target site preferences (Zhang et al. 2001).

Common wheat (Triticum aestivum L. 2 n=42, AABBDD) is hexaploid and carries most genes in triplicate. While a large body of literature exists on class II TEs of maize and rice, studies of wheat TEs are limited. Transposition of TEs into the coding or promoter regions of genes in rice or maize is often reflected in phenotypic changes, whereas the polyploid nature of wheat makes mutational effects hard to detect phenotypically. Recently, genomic sequence analyses in several contiguous gene regions have revealed the existence of class II TEs in the wheat genome (Anderson et al. 2002; Ramakrishna et al. 2002; Wicker et al. 2003a; Kong et al. 2004). At least 3000 copies of TEs of the CACTA superfamily are present in the diploid T. monococcum genome, suggesting that TEs may have played an important role in wheat genome evolution (Wicker et al. 2003b). MITEs may also be important in wheat evolution, and may affect the expression of wheat genes. Stowaway-like MITEs and several unclassified MITEs have been detected in genic regions of wheat (Bureau and Wessler 1994; Anderson et al. 2001; Wicker et al. 2001; Hessler et al. 2002; Ramakrishna et al. 2002; Li et al. 2004) and Stowaway-like and Waffle MITEs have been found in matrix-attachment regions that are thought to affect transcription (Anderson et al. 2002).

Recently, draft-genome sequences for rice (Goff et al. 2002; Yu et al. 2002) and finished sequences for several rice chromosomes (Feng et al. 2002; Sasaki et al. 2002; The Rice Chromosome 10 Sequencing Consortium 2003) have been reported, and searches of these databases have led to the identification of an autonomous element associated with the MITE mPing (Jiang et al. 2003). Less sequence information is available for wheat, whose genome is 40 times larger than that of rice. Since rice and wheat diverged from a common ancestor, the availability of the rice-genome sequence provides the opportunity to conduct comparative analyses of TEs in wheat and rice.

We previously identified an insertion in Exon 4 of a null Wx-A1 allele carried by a bread wheat line from Turkey (Saito et al. 2004). The insertion was short (165 bp) with perfect 12-bp TIRs flanked by 8-bp TSDs, and therefore had the structural characteristics of a MITE. This MITE was designated Hikkoshi (Accession No. AY376310). In this study, we characterize and classify Hikkoshi elements, and employ bioinformatic analyses to identify a candidate for the autonomous version of this MITE system in rice genome sequences.

Materials and methods

Plant materials

Seed accessions of T. aestivum L. were obtained from the gene bank of the National Institute of Agrobiological Sciences (Tsukuba, Japan).

PCR analysis

Genomic DNA was extracted from young leaf tissue using the Nucleon Phytopure Plant DNA Extraction Kit (Amersham Biosciences, Little Chalfont, UK) according to the manufacturer’s instructions. The primers 5′-CAGTGGCGTAGCTAGGGG-3′ and 5′-GGCGTAGCCAGCCCAATAA-3′, were designed on the basis of the TIR and subterminal sequences of the Hikkoshi MITE in the Wx-A1 gene of Turkey 124, and used to obtain Hikkoshi elements from the wheat cultivars Chinese Spring and Turkey 124. The PCR products were cloned using the TOPO TA cloning kit (Invitrogen, Carlsbad, CA, USA). Inserts were sequenced using a BigDye Terminator v1.1 Cycle Sequencing kit and an ABI Prism 310 genetic analyzer (Applied Biosystems, Foster City, CA, USA).

Sequence analysis

To find Hikkoshi-related sequences, database searches were performed using BLAST programs on servers available from the National Center for Biotechnology Information (NCBI; http://www.ncbi.nlm.nih.gov/BLAST/, nucleotide sequence databases nr, est, gss, wgs and htgs and peptide sequence database nr) and FASTA programs on servers available from the DNA Data Bank of Japan (DDBJ; http://www.ddbj.nig.ac.jp/search/fasta-j.html, nucleotide sequence databases nr, est, gss and htgs) (Pearson and Lipman 1988; Altschul et al. 1997). The FASTA server at the University of Virginia (http://fasta.bioch.virginia.edu/fasta/) was used for two sequence comparisons (Pearson and Lipman 1988). Nucleic acid or amino acid sequences were aligned using CLUSTAL W (Thompson et al. 1994) with default parameters. The sequence alignments were displayed using the GeneDoc program (http://www.psc.edu/biomed/genedoc; Nicholas et al. 1997).

Phylogenetic analysis

Amino acid sequences containing hAT dimerization domains were selected from the protein domain database Pfam (Bateman et al. 2004). The full-length amino acid sequence of the Slide TPase used in the analysis was deduced from its predicted ORFs. Full-length amino acid sequences of TPases were aligned using CLUSTAL W (Thompson et al. 1994). The phylogenic tree was constructed using the neighbor-joining option in MEGA Version 2.1 (Kumar et al. 2001) with 1000 bootstrap replications.

Results and discussion

Wheat has multiple copies of the Hikkoshi MITE

Southern analysis showed that the Hikkoshi MITE represents a repetitive sequence in the wheat genome (data not shown). Hikkoshi MITEs were found not only in the Wx-A1 mutants from Turkey, but were also present in wild-type lines. The MITEs Toya and Tripper have TSDs and TIRs with characteristics similar to those of Hikkoshi. Although the overall sequences of these elements are not similar to that of Hikkoshi, the TIR sequences of Toya both in rice (5′-CAGTGGCGGA-3′) and tobacco (5′-CAGAGGCGGA-3′), and of Tripper in wheat (5′-CAGTGGCGGAGCTT-3′) are very similar, and these MITEs are flanked by 8-bp TSDs, suggesting that these three elements might belong to the same superfamily. The copy number of Toya in rice and tobacco genomes is quite low (Nagano et al. 2002; Schenke et al. 2003) while multiple copies of Tripper are found in the wheat genome (Li et al. 2004). Hikkoshi appears to resemble Tripper in this respect.

The MITEs are often structurally related to autonomous elements that encode a TPase. In the Tourist-like MITE family mPIF of maize, a conserved terminal region is common to an active DNA transposon family called PIF and its autonomous element PIFa (Zhang et al. 2001). Genome-wide analyses of transposable elements in rice showed that Mariner-like TEs and PIF/Pong-like TEs are responsible for the amplification of Stowaway MITEs and Tourist-like MITEs, respectively (Feschotte et al. 2003; Zhang et al. 2004). These MITEs have TIRs and subterminal sequences that are similar to those of their controlling autonomous elements.

We therefore attempted to amplify additional Hikkoshi sequences, including autonomous elements, from the genomic DNA of the wheat lines Chinese Spring and Turkey 124 using PCR primers derived from the TIR and subterminal sequences of Hikkoshi. In both cultivars, products of approximately 200 bp were preferentially amplified. In addition, a minor band of about 400 bp was amplified from Turkey 124. The 200-bp product was composed of several different sequences, each of which carried several nucleotide substitutions relative to the original Hikkoshi sequence from the Wx-A1 gene (Fig. 1a). Some of these fragments were also 10–80 bp shorter than Hikkoshi. The 400-bp fragment possessed the same subterminal sequences as Hikkoshi but carried additional sequence within the subterminal regions (Fig. 1b). The extra 241 bp in this fragment shows similarity to several wheat EST clones, but these ESTs themselves do not show significant similarity to known proteins. The PCR data confirm the Southern results showing that the Hikkoshi element has spread in the wheat genome, and further indicate that modification of the element has occurred during or after its movement. We expected to find some sequences with homology to known TPases, but no such sequence was identified by this method. Zhang et al. (2001) were also unable to isolate a targeted autonomous element from maize using primers derived from the subterminal region of the corresponding non-autonomous element, although the autonomous element was present in the genome. We therefore decided to obtain additional genomic information to aid us in identifying a candidate autonomous element related to the Hikkoshi MITE.

Fig. 1
figure 1

a, b PCR amplification of Hikkoshi elements. a Multiple alignment of Hikkoshi MITEs amplified from the genomic DNA of Turkey 124. b Pairwise alignment of the Hikkoshi MITE from the Wx-A1 gene of Turkey 124 and a 400-bp element amplified from the genomic DNA of Turkey 124. The arrows indicate the TIRs. Sequence identities are shaded, and gaps are indicated by dashes

Hikkoshi MITEs are present in other species

We performed database searches to detect additional Hikkoshi MITEs in wheat and other plant genomes, at first employing the complete sequence of the wheat Hikkoshi MITE as a query in both BLASTN and FASTA searches. Twenty-five accessions were identified that included the 12-bp TIRs and 8-bp TSDs typical of the wheat Hikkoshi MITE and showed more than 60% similarity to this MITE (Fig. 2). We categorized these sequences as members of the Hikkoshi MITE family. These elements were quite homogeneous in size (157–180 bp), which is characteristic of MITEs belonging to the same family.

Fig. 2
figure 2

Multiple alignment of Hikkoshi MITEs found in databases. The filled arrows indicate TSDs and open arrows indicate TIRs. Conserved nucleotides are shaded. Gaps are indicated by dashes. Accession numbers for the EST or genomic clones carrying these MITEs are shown on the right. The overlines indicate nucleotides in the subterminal regions that are well conserved among rice, barley and wheat. Hv Hordeum vulgare, Ta Triticum aestivum, Wx Wx-A1, Os Oryza sativa, Or Oryza rufipogon, Zm Zea mays

The Hikkoshi MITE family appears to belong to the hAT superfamily, which includes a number of other MITEs (Morgan and Middleton 1990; Besansky et al. 1996; Smit and Riggs 1996; Surzycki and Belknap 1999; Lepetit et al. 2000; Tu 2001; Holyoake and Kidwell 2003). TEs belonging to this superfamily have 8-bp TSDs and TIR sequences that are similar to those of Hikkoshi.

Four of the 25 accessions carrying Hikkoshi MITEs represent EST clones from wheat and barley (Accession nos. CD911985, BQ901405, CD880478 and CA009194), while the remaining accessions represent genomic clones originating from barley (one clone), japonica rice (16 clones), wild rice (two clones) and maize (two clones) (Fig. 2). A number of positions in the subterminal regions of the rice, barley and wheat MITEs were well conserved (Fig. 2). Thus, Hikkoshi-like elements exist not only in wheat but are distributed throughout the Poaceae.

In addition to these 25 elements, five truncated Hikkoshi MITEs of 90–158 bp in length and lacking TIRs and subterminal regions at one end were identified in wheat; one in a cDNA clone (CYP71C3-TA cytochrome P450; AF123603) and four in EST clones. None of the EST clones have been functionally annotated, and their function could not be determined by database searches.

The copy number of Hikkoshi MITEs in the genome of japonica rice cv. Nipponbare was estimated using BLASTN and FASTA searches. The 16 elements that showed more than 60% similarity to the wheat Hikkoshi MITE (Fig. 2) were employed as queries. Sequences that showed at least 85% similarity over more than 50% of the length of the query were classified as Hikkoshi MITEs. By these criteria, a total of 49 elements were identified, including the 16 elements originally identified in japonica rice. Among the 33 newly identified elements, 17 elements have TIRs flanked by 8-bp TSDs, three elements lack TSDs and 13 elements did not have a second TIR or subterminal sequences within 250 bp of the first TIR. Five of the 13 elements that appeared to lack TIR and subterminal sequences at one end actually had a second TIR sequence 278–4524 bp downstream from the originally identified TIR. The subterminal sequences flanking the second TIR showed similarity to 3′ subterminal sequences of the Hikkoshi MITE. Other transposable elements, including Tourist, Stowaway, Gaijin, and En/Spm, and long terminal repeat (LTR) retrotransposon sequences, were inserted between the two TIRs in several cases (Table 1). Stowaway-like and Tourist-like MITEs are present in high copy numbers in rice; the Nipponbare genome carries an estimated 30,000 copies of Stowaway-like and 60,000 copies of Tourist-like MITEs (Feschotte et al. 2003; Zhang et al. 2004). Compared with these MITEs, the copy number of the Hikkoshi MITE was quite low, and was more similar to the copy numbers of MITEs such as Toya, Akan and Mashu (Nagano et al. 2002). For example, only approximately 10–30 copies of Toya are present in the Nipponbare genome (our unpublished data).

Table 1 Hikkoshi MITEs found in O. sativa genomic sequences

Twenty-two of the 49 rice Hikkoshi elements were located in the structural sequences of putative or hypothetical genes. Eighteen of the remaining 27 elements were located within 2-kb upstream or downstream of genes (Table 1). This agrees with previous reports suggesting that MITEs are often found in transcribed regions or in regulatory domains of genes (Bureau and Wessler 1994; Bureau et al. 1996; Iwamoto and Higo 2003). It will be interesting to determine whether the presence of the Hikkoshi MITEs in rice genes affects the functions of these genes.

OsHikkoshi is the best candidate for the orthologous autonomous element involved in the spread of Hikkoshi MITEs

Since we had not obtained a candidate autonomous element from wheat via PCR amplification, we attempted to obtain sequence information for the autonomous element responsible for the mobilization of the Hikkoshi MITEs of wheat using rice genome bioinformatics. Hikkoshi MITEs are present in the rice genome (Fig. 2) and sequence information for the complete rice genome is available, potentially allowing us to identify candidate autonomous elements by database searches. Further detailed surveys were conducted using Hikkoshi sequences from both wheat and rice. Good candidates should have complete TPase sequences carrying Hikkoshi TIRs and TSDs at both ends.

For these analyses, the wheat Hikkoshi sequence was first separated into two sections, the first 80 bp and the last 85 bp, which were used separately as queries for FASTA searches in DDBJ. Although no new accessions having similarity with the 3′ half of Hikkoshi were found, 31 new accessions that had high similarity (more than 65%) to the 5′ half were identified. In each of these accessions, the region of similarity began with a 12–15-bp motif that was almost identical to the TIR sequence of the Hikkoshi MITE. The accessions were then individually scanned for the presence of a second TIR sequence within 5000 bp of this sequence. In 18 of 31 accessions, a second TIR sequence was detected 250–3400 bp downstream of the originally identified TIR. Direct repeat sequences of 8 bp also flanked both TIR sequences in these accessions. The sequences between the TIRs in these accessions were analyzed, and a putative TPase ORF (Accession no. AAP55096) was found in accession AE017121 (Fig. 3a), from chromosome 10 of Nipponbare (The Rice Chromosome 10 Sequencing Consortium 2003). The start site of the putative TPase ORF of OsHikkoshi is 753 bp downstream of the 5′ TIR (Fig. 3b). This TSD-TIR-TPase-TIR-TSD sequence displays homology not only with the TIRs of the wheat Hikkoshi MITE, but also shows approximately 73.3% identity to the 5′ subterminal 45-bp region (Fig. 3a). This element was designated OsHikkoshi (for O. sativa Hikkoshi). Internal deletion derivatives of OsHikkoshi were also found in accessions AP003381 (966 bp; positions 114406–113441) and AC135568 (1965 bp; positions 19899–21863). The derivative in AC135568 retained part of the coding sequence of the OsHikkoshi TPase. When OsHikkoshi was used as a query in a BLAST search against the genomic sequences of Nipponbare, two additional accessions showing similarity with OsHikkoshi were identified. The genomic clones AP005925 from chromosome 8 and AC136521 from chromosome 5 appear to have long ORFs, similar to that of OsHikkoshi. However, a premature termination codon occurs in the coding region of AP005925 due to a 4-bp insertion, and an insertion of approximately 15,000 bp is found in AC136521 (data not shown). These two elements are thought to be non-autonomous elements derived from OsHikkoshi. Thus, OsHikkoshi is the strongest candidate for the orthologous autonomous element from which the Hikkoshi MITEs were derived, and there is only one intact copy of OsHikkoshi in the Nipponbare genome.

Fig. 3
figure 3

a, b Structure of OsHikkoshi. a Comparison of wheat Hikkoshi MITE and OsHikkoshi sequences. The short dotted line indicates the position of an internal 3246-bp OsHikkoshi sequence not shown in the alignment. Sequence identities are shaded, TIRs are boxed and TSDs are indicated by arrows. b Schematic representation of the structures of OsHikkoshi and Tip100. The Tip100 element shown here is from Ipomoea purpurea (Accession no. AB004906). Conserved regions, including the ZnF_TTF (black box) and hATC (stippled box) domains, are shaded. The open and filled triangles represent TSDs and TIRs, respectively. TSD sequences are shown in lower case letters and TIR sequences are in capital letters. The numbers above the diagrams refer to the nucleotide position relative to the first base of the 5′ TIR. TSD sequences on both sides of Tip100 are derived from an intron of the CHS-D gene in I. purpurea (Habu et al. 1998)

However, OsHikkoshi does not appear to be a likely candidate for the autonomous element of the Hikkoshi MITEs of rice (Table 1) because, contrary to what was observed with the wheat MITEs, the subterminal sequences of the rice MITEs do not show high similarity with subterminal sequences from OsHikkoshi. Furthermore, when we searched for autonomous elements using rice Hikkoshi MITE sequences, OsHikkoshi was not identified as a candidate element in the screen. In fact, no autonomous elements were identified when the rice MITE sequences were used as queries. Thus, MITEs with high similarity to OsHikkoshi are found in the wheat genome but not in the rice genome. This is very interesting from an evolutionary standpoint. It is possible that MITEs were never derived from OsHikkoshi in rice, but were derived from the orthologous element in wheat. This allowed us to use the wheat Hikkoshi MITE to identify OsHikkoshi in the rice genome. The rice Hikkoshi MITEs may have originated from another related autonomous element, but such an element with complete features apparently no longer exists, at least in the Nipponbare genome. One possible explanation is that lesions in this autonomous element resulted in the loss of TIRs and subterminal regions, such that no traces of the rice Hikkoshi-like autonomous element were identified by the method employed here. A second possibility is that the parental autonomous element of the rice Hikkoshi MITEs has disappeared from the Nipponbare genome.

OsHikkoshi is also present in indica rice

When a BLAST search was conducted against whole genome shotgun (wgs) databases at NCBI, a sequence identical to OsHikkoshi was found in an indica rice genomic clone (AAAA02005857). However, this accession mapped to chromosome 2, while the accession containing OsHikkoshi in the japonica genome (AE017121) was located on chromosome 10. When we examined both loci reciprocally, we did not find OsHikkoshi or its excision footprints at the chromosome 10 locus of the indica genome, nor on the chromosome 2 locus of the japonica genome. This suggests that OsHikkoshi transposed into these loci after the evolutionary separation of japonica and indica rice.

Copy numbers of autonomous elements may influence the transposition of TEs. For example, copy numbers of mPing and Pong vary among cultivars of japonica and indica rice, and the increased copy number of Pong reflects the transposition activity of mPing (Jiang et al. 2003). It would be interesting to determine if the copy number of OsHikkoshi varies among rice cultivars, since this may influence the transposition activity of Hikkoshi family MITEs.

OsHikkoshi is a member of the hAT superfamily

OsHikkoshi is 3424 bp in length and contains one ORF encoding 811 amino acids (Fig. 3b). The putative amino acid sequence includes two putative conserved domains, the ZnF_TTF and the hATC domains. ZnF_TTF is a zinc-finger domain found in TPases and transcription factors that is assumed to have DNA binding activity (Doerks et al. 2002). The hATC domain is a hAT dimerization domain (Essers et al. 2000) that is conserved among autonomous TEs of the hAT superfamily, such as hobo, Ac, Tam3, Slide and Tag1 (Calvi et al. 1991; Hehl et al. 1991; Essers and Kunze 1995; Grappin et al. 1996). Like hAT superfamily MITEs, autonomous TEs of the hAT superfamily share similar TIRs flanked by 8-bp TSDs and, in addition, encode TPases with DNA binding domains and C-terminal hATC domains (Essers et al. 2000; Rubin et al. 2001). OsHikkoshi has all these characteristics and clearly belongs to the hAT superfamily. Thus, both an autonomous TE and a number of MITEs belonging to the hAT superfamily have been found in the rice genome using this database search.

To further classify OsHikkoshi, a database search with the BLASTP program was conducted using the OsHikkoshi TPase as a query. Fourteen proteins, originating from Arabidopsis thaliana, Solanum demissum and Ipomoea purpurea as well as rice (data not shown), showed high homology to the OsHikkoshi TPase (E-values less than e-150). All except one of these proteins had ZnF_TTF and hATC domains. Hikkoshi-like TIRs and 8-bp TSDs flanked seven of the fourteen TPases (Table 2). One of these proteins was the TPase of Tip100 (Fig. 3b), originally found in the CHS-D gene of I. purpurea (Habu et al. 1998). Tip100 is categorized as a hAT superfamily TE, and is a member of a subgroup of similar TEs making up the Tip100 family (Robertson 2002). TIR sequences of OsHikkoshi and Tip100 are highly conserved; and OsHikkoshi appears to belong to the Tip100 family or to a new family that is closely related to Tip100. The other six TPase encoding elements shown in Table 2 are also closely related to Tip100 elements; however, none show as much similarity to the wheat Hikkoshi MITE as OsHikkoshi does. To examine the relationship of OsHikkoshi to other hAT TPases, a phylogenetic analysis was performed with 37 hAT TPases from plants, animals and fungi (Fig. 4). This analysis confirmed that the OsHikkoshi TPase belongs to the Tip100 clade.

Table 2 Comparison of Hikkoshi and OsHikkoshi TIRs with TIRs of TPase-encoding elements identified in a BLASTP search
Fig. 4
figure 4

Phylogenetic tree of hAT TPases. Each sequence is identified by a GeneBank accession number, followed by two letters indicating the species of origin. At A. thaliana, Sl S. latifolia, Os O. sativa, Zm Z. mays, Am A. majus, Nt N. tabacum, Bd B. dorsalis, Hs H. sapiens, Ai A. immersus, Cp C. parasitica, Ti T. inflatum, Fo F. oxysporum, Lc L. cuprina, Bt B. tryoni, Md M. domestica, Dm D. melanogaster, Sd S. demissum, Ip I. purpurea. Bootstrap values greater than 50% are shown

A TBLASTN search of a wheat EST database identified several clones (BQ904805, BJ216929, CA501395, BJ313779, CD925523, AL819648, BJ238316, BJ209493, CK163928, CA745598, AJ745420, CA664836, BQ166729, BQ235954, CD888663, BJ303488 and BQ802425) with high similarity (E-value ≤e-05) to the TPase of OsHikkoshi (data not shown). The sequence information from these clones should facilitate the isolation of autonomous Hikkoshi TEs from wheat. More than ten other MITEs belonging to several superfamilies have been identified in wheat (Bureau and Wessler 1994; Anderson et al. 2001, 2002; Hessler et al. 2002; Ramakrishna et al. 2002; Li et al. 2004). However, autonomous elements related to these MITEs have not been found. The comparative genomic approach employing computational analyses described here should also be useful in identifying autonomous TEs related to these wheat MITEs.