Abstract
Floral transition in model plants including Arabidopsis and rice has been studied extensively through molecular genetic approaches. Many genetic factors in different flowering pathways, which depend mainly on photoperiod, vernalization, autonomous and ambient temperature are regulated coordinately to control floral induction. However, for the ornamental plants orchids, the molecular mechanisms underlying the floral transition are still unclear. Recently, genes with potential flowering-related functions have been identified in different orchid species and their functional roles have also been characterized/examined using homologous or heterologous systems. In this review, we summarize the molecular networks of flowering genes and their regulation as revealed in model plants such as Arabidopsis and rice, and also describe the recent discoveries/studies on flowering genes in several commercially representative orchid species providing a perspective on orchid flowering research. In addition, our recent results through transgenic approaches with ectopic expression of Hd3a, a rice florigen gene for the induction of precocious flowering in Phalaenopsis orchids are also discussed.
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1 Introduction
Transition from vegetative growth to the reproductive stage of flowering plants is usually influenced by environmental factors such as photoperiod and ambient temperature. The endogenous molecular signaling network in response to the different cues has been studied extensively in the model plant, Arabidopsis (Andres and Coupland 2012). In parallel, understanding of molecular mechanisms underlying flowering regulations in agricultural crops including rice has also been widened (Cho et al. 2017). Interestingly, some genetic factors are conserved, such as FLOWERING LOCUS T (FT) which encodes a strong candidate for florigen that triggers floral induction. Other species-specific or genus-specific factors are also required for flowering across various plant species.
The Orchidaceae is one of the largest families in angiosperms. Flowers of plants belonging to the family display a high degree of speciation, with wide variations in floral features including color, shape, size and fragrance to attract pollinators (Cozzolino and Widmer 2005). Floral induction is an important step leading to proper flower development in orchids; however, the molecular mechanism still remains to be elucidated. In general, juvenility, ambient temperature and photoperiod are known to be crucial for determining flowering time in orchids. In recent studies, many flowering-related genes in orchids have been identified and characterized. In this review, a summary of the major research findings involved in the regulation of orchid floral induction is presented together with representative flowering genes of model plants. In addition, results gained from our recent transgenic approaches with Phalaenopsis orchids are also included.
2 Key players in the flowering of Arabidopsis
2.1 Florigen
The model plant Arabidopsis is an excellent material for studying flowering control because of its short life cycle and the various tools available for genetic studies. Floral transition in Arabidopsis is controlled by photoperiod, ambient temperature and vernalization. Among the regulatory networks, the FT gene is the strongest candidate to be ‘florigen’, the hypothesized master regulator of flowering in plants. The FT gene encodes a small globular protein belonging to the phosphatidylethanolamine-binding protein (PEBP) family (Mathieu et al. 2007). In Arabidopsis, FT is expressed in leaves and the FT protein is transported to the shoot apical meristem (SAM) where FT activates the transcription of SOC1 (SUPPRESSOR OF OVEREXPRESSION OF CONSTANS 1) and floral meristem identity gene AP1 in cooperation with a basic leucine zipper (bZIP) transcription factor FD (Abe et al. 2005; Lee and Imaizumi 2018; Yoo et al. 2005). Of note, it was recently shown that FT activity is likely to be regulated differentially for flowering in different plant species indicating that it may have evolved and integrated into different regulatory circuits in distinct plant species for flowering under their own favorite conditions (Jang et al. 2015).
2.2 Photoperiodic flowering regulator CONSTANS
Transcription factor CONSTANS (CO) regulates floral transition under the control of photoperiod. CO activates the expression of FT and SOC1 and causes early flowering under long-day (LD) conditions (Samach et al. 2000; Suarez-Lopez et al. 2001; Tiwari et al. 2010). Subsequently, LEAFY (LFY), a meristem identity gene is activated by SOC1 (Lee and Lee 2010). CO itself is activated and repressed by FLOWERING bHLH (FBH) and CYCLING DOF (DNA-binding one zinc finger) FACTOR (CDF), respectively (Fornara et al. 2009; Ito et al. 2012). GIGANTEA (GI) and FLAVIN-BINDING KELCH REPEAT F-BOX 1 (FKF1) also activate CO directly (Sawa et al. 2007). Under inductive LDs, the peak expression of GI and FKF1 protein coincides resulting in the accumulation of the GI-FKF1 complex regulating the degradation of CDF. Recently, CINCINNATA (CIN) clade of class II TEOSINTE BRANCHED 1/CYCLOIDEA/PROLIFERATING CELL NUCLEAR ANTIGEN FACTOR (TCP) protein has been shown to activate the expression of CO in the association of FBH and GI (Kubota et al. 2017; Liu et al. 2017).
In addition to transcriptional control, post-transcriptional regulation of CO is also crucial for flowering time determination. The ubiquitin E3 ligase CONSTITUTIVE PHOTOMORPHOGENIC 1(COP1) cooperates with SUPPRESSOR OF PHYA-105 1 (SPA1) to promote CO degradation (Zuo et al. 2011). COP1 also promotes GI degradation with the aid of EARLY FLOWERING 3 (ELF 3) (Yu et al. 2008). On the other hand, CO protein is stabilized by photoreceptors such as phytochromes and cryptochromes (Valverde et al. 2004). The FKF1 has also been shown to stabilize the CO protein by inhibiting COP1-dependent CO degradation to regulate the photoperiodic flowering (Lee et al. 2018; Song et al. 2012).
Most regulators of CO are controlled by the system of the circadian clock in plants. In the morning, the expression of CDF is high while the expression of GI and FKF1 is low. However, a reversed situation is observed in the afternoon (Niwa et al. 2007). Expression of CO, therefore, is increased in the late afternoon and maintained until dusk. Light-dependent stabilization of the rhythmically expressed CO is needed for FT activation, resulting in floral induction. Indeed, phytochrome and cryptochrome photoreceptors contribute to stabilize CO by retarding the activity of SUPPRESSOR OF PHYA-105 1 (COP1-SPA1) ubiquitin ligase complex, which promotes degradation of CO (Ponnu 2020; Zuo et al. 2011). More recently, it was found that FT expression peaks in the morning during spring in open-field LD condition through the combined action of phytochrome A and ELF3 (Song et al. 2018). Under the condition, CO protein is likely more stable in the morning that may contribute to the induction of FT. Thus, CO is a key component occupying in the photoperiodic flowering pathway.
Gibberellins (GAs) are a class of diterpenoid plant hormones that regulate a wide range of developmental processes including floral induction in Arabidopsis. However, it is known that GAs do not have a conserved floral promoting function in plants (Blazquez et al. 1998; Mutasa-Gottgens and Hedden 2009). Moreover, although GA promotes floral transition from vegetative to reproductive development, it inhibits the transition to flower formation in Arabidopsis reflecting the complexity of GA signaling involved in plant development (Yamaguchi et al. 2014). The GA singling is believed to play a role in converging photoperiodic pathway to regulate the floral induction by degrading the DELLA proteins (Nohales and Kay 2019).
2.3 Floral repressor FLOWERING LOCUS C
2.3.1 Vernalization pathway
In Arabidopsis, FT and two other flowering integrators FD and SOC1 are negatively regulated by FLOWERING LOCUS C (FLC), a MADS-box gene (Helliwell et al. 2006). Constant expression of FLC prevents the winter-annual Arabidopsis from flowering before winter season, and repression is released by prolonged cold temperature termed vernalization. During and after vernalization, the chromatin changes occur at FLC with a reduced level of histone acetylation and increased levels of the repressive methylation in H2K9 and H3K27 (Coupland 2019; Sung and Amasino 2004). Three plant homeodomain (PHD) finger-containing proteins including VERNALIZATION INSENSETIVE (VIN3), VERNALIZATION 5 (VRN5) and VERNALIZATION 5/VIN3 LIKE 1 (VEL1) in association with four polycomb repressive complex 2 (PRC2)-like subunits SWINGER (SWN), VERNALIZATION 2 (VRN2), FERTILIZATION INDEPENDENT ENDOSPERM (FIE) and MULTICOPY SUPPRESSOR OF IRA 1 (MSI1) are involved in the vernalization-dependent pathway (Questa et al. 2016). The SWN subunit is a homolog of Drosophila E(z) protein which contains histone 3 lysine 27 (H3K27) methyltransferase activity. The PHD-PRC2 protein complex represses the activity of FLC by the H3K27 trimethylation (H3K27me3) of FLC chromatin (Finnegan and Dennis 2007). This repression is further maintained by the LIKE HETEROCHROMATIN 1 (LHP1) which recognizes the H3K27me3 mark (Yuan et al. 2016). The epigenetic modification of FLC by vernalization is stably maintained until embryogenesis so that FLC is re-activated in the next generation. Recently, an intronic noncoding RNA of FLC termed COLD ASSISTED INTRONIC NONCODING RNA (COLDAIR) has been shown to be required for the vernalization-mediated repression of FLC through its interaction with the PRC2-like complex (Heo and Sung 2011). Interestingly, a PRC2-like complex containing CURLY LEAF (CLF), EMBRYONIC FLOWER 2 (EMF2) and FIE has been shown to repress the FT activity by mediating the deposition of H3K27me2 during vegetative growth (Liu et al. 2018). Although the CLF-PRC2 complex is associated with FLC repression, CLF mutations induce early flowering of Arabidopsis suggesting that the CLF-PRC2 complex has a stronger repressive effect on FT than on FLC chromosomes.
2.3.2 Autonomous pathway
To activate floral transition, FLC can also be repressed by the autonomous pathway which means photoperiod-independent. Components of the autonomous pathway include RNA binding proteins FCA, FPA and FLOWERING LOCUS K (FLK), polyadenylation factor FY, homeodomain protein Luminidependens (LD), chromatin remodeling proteins FLOWERING LOCUS D (FLD) and FVE. The autonomous pathway suppresses FLC through histone modifications and RNA-processing regulation (Cheng et al. 2017). An antisense RNA of FLC termed COLD INDUCED LONG ANTISENSE INTEGENEIC RNA (COOLAIR) is generated with two major alternative splicing forms depending on the usage of proximal or distal polyadenylation site (Liu et al. 2010; Wu et al. 2020). COOLAIR with proximal polyadenylation is important for the repressive state of FLC (Liu et al. 2010), and it is promoted by the autonomous pathway (Liu et al. 2007). With the action of FCA, FY and a splicing factor pre-mRNA processing 8 (PRP8), generation of proximal polyadenylated site of COOLAIR is increased, which leads to the FLD-dependent demethylation of H3K4me2 of FLC chromatin (Marquardt et al. 2014). H3K4me2 and H3K4me3 are the marks of transcriptional activation. The demethylation of H3K4me2 and generation of COOLAIR with proximal polyadenylation site splicing are regulated by a positive feedback. Moreover, COOLAIR was shown to mediate the function of PRC2-regulated vernalization (Tian et al. 2019).
2.3.3 FRIGIDA activates FLOWERING LOCUS C
The expression of FLC is promoted by the FRIGIDA (FRI) which encodes a coiled-coil protein through the modification of FLC chromatin (Li et al. 2018). FRI is defective in the rapid cycling Arabidopsis accessions such as Columbia and Landsberg erecta; so that vernalization is not necessary to facilitate flowering and they can complete the life cycle within one season. To activate FLC, FRI interacts with several FLC-specific regulators including FRI-LIKE 1 (FRL1), DNA binding protein SUPPRESSOR OF FRIGIDA 4 (SUF4), and transcriptional activators FLC EXPRESSOR (FLX) and FRIGIDA ESSENTIAL 1 (FES1) to form a FRI-complex (FRI-C) (Choi et al. 2011). The FRI-C recruits the SWR complex (SWR-C) and general transcriptional factors to FLC; sequentially, the FLC chromatin is marked with H3K4me3, H3K36me2, histone 3 acetylation (H3ac) and H4ac. All of these histone modifications are associated with transcriptional activation. SWR-C is a homolog of yeast ATP-dependent chromatin modifier SWR1 complex. The components of SWR-C include PHOTOPERIOD-INDEPENT EARLY FLOWERING 1(PIE1), SUPPRESSOR OF FRIGIDA 3 (SUF3), SWC6 and ACTIN-RELATED PROTEIN 4 (ARP4) (Choi et al. 2007). SWR-C also catalyzes the replacement of H2A with H2AZ, which leads to the activation of FLC (Deal et al. 2007). The protein level of FRI is negatively regulated by proteosome-mediated degradation during vernalization, and the degradation is accompanied by the up-regulation of FLC COLDAIR (Hu et al. 2014). A cullin-RING-type E3 ubiquitin ligase CUL3A and light response BTB proteins (LRBs) are responsible for promoting FRI degradation by interacting with FRI (Hu et al. 2014).
2.3.4 Polymerase II associated factor 1 complex activates the FLOWERING LOCUS C
The components and functions of the RNA Polymerase II associated factor 1 complex (Paf1 complex, Paf1c) are conserved from yeasts through to humans and plants (He et al. 2004; Tomson and Arndt 2013). Paf1c is known to be required for the recruitment of histone modification factors and also for small RNA-mediated gene silencing process (Kowalik et al. 2015; Tomson and Arndt 2013). Indeed, Paf1c suppresses floral transition by activating FLC transcription through H3K4me3 enrichment in FLC chromatin in Arabidopsis (He et al. 2004). Components of Paf1c include EARLY FLOWERING 7 (ELF7), EARLY FLOWERING 8/VERNALIZATION-INDPENDENT 6 (VIP6), VIP3, VIP4 and VIP5 (Oh et al. 2004). ELF7 and VIP6 of Paf1c are also involved in the activation of FLOWERING LOCUS M/MAF1 (FLM) and MAF2 to MAF5 but not SUPPRESSOR OF VEGETATIVE PHASE (SVP) and AGAMOUS LIKE (AGL) (He et al. 2004). Most of these are MADS-box genes and they act as flowering suppressors like FLC. Unlike FLC, however, FLM is involved in the regulation of photoperiodic flowering, as well (Scortecci et al. 2003).
2.3.5 FLOWERING LOCUS T homologs
Several homologs of FT have been identified in Arabidopsis including TERMINAL FLOWER 1 (TFL1), TWIN SISTER OF FT (TSF), MOTHER OF FT AND TFL1 (MFT), BROTHER OF FT AND TFL1 (BFT) and ARABIDOPSIS THALIANA CENTRORADIALIS HOMOLOGUS (ATC) (Wickland and Hanzawa 2015). Among these genes, FT and TFL1 are the major determinants of flowering time under LD conditions (Kim et al. 2013). Interestingly, TFL1, BFT and ATC function more like floral repressors but not activators. Furthermore, FT and TFL1 also play antagonistic roles in the determination of inflorescence meristem identity affecting plant architecture (Lee et al. 2019); Their antagonistic functions are likely achieved through the binding competition with FD protein (Moraes et al. 2019). The SVP has been shown to repress FT and TSF by activating the FT repressors TEMPRANILLO 2 (TEM 2) under the low-ambient temperature (16 °C) for Arabidopsis (Jang et al. 2009; Marin-Gonzalez et al. 2015). An alternatively spliced form of FLM, FLM-β may contribute to the control of flowering by low-ambient temperature together with SVP (Lee et al. 2013). Pre-mRNA of FLM is spliced into FLM-β or FLM-δ depending on the usage of different exons. The ratio of FLM-β to FLM-δ is increased at low-ambient temperature but decreased at high-ambient temperature. Although both FLM-β and FLM-δ interact with SVP, SVP suppresses the expression of floral activators only with FLM-β. Meanwhile, the bHLH transcription factor PHYTOCHROME INTERACTING FACTOR 4 (PIF4) has been recently shown to regulate the floral transition under high-ambient temperature (Kumar et al. 2012). This indicates that sophisticated mechanisms are available in Arabidopsis for floral induction responding to the changes in ambient temperature. Of note, transcriptional activity of PIF4 has been shown to be suppressed by DELLAs, while GAs promoted the PIF4 activity by removing the DELLAs (de Lucas et al. 2008) suggesting convergence between the GA pathway and ambient temperature pathway in the control of flowering.
2.3.6 High expression of osmotically responsive gene 1 can activate FLOWERING LOCUS C
A RING-finger E3 ubiquitin ligase high expression of osmotically responsive gene 1 (HOS1) has been demonstrated to play a role in activating FLC under short-term and intermittent cold stress (4 °C for several hours to few days) (Jung et al. 2013). Compared to vernalization, short-term cold stress causes the induction but not suppression of FLC resulting in delayed flowering (Lee and Park 2015). HOS1 interacts with FLC chromatin and FVE, a component of the autonomous flowering pathway. This interaction may result in the dissociation of histone deacetylase 6 (HDAC6) from FLC chromatin, which leads to the de-repression of FLC. The HOS1 also has been shown to regulate CO degradation under short-term cold stress leading to delayed flowering (Lazaro et al. 2012). All of these findings suggest that the HOS1 is crucial for the fine-tuning of flowering under short-term temperature fluctuations. The regulatory network of flowering control in Arabidopsis, showing the photoperiod, vernalization, autonomous and ambient temperature dependent pathways, is presented in Fig. 1.
3 Key players in the flowering of rice
Extensive research made it possible to isolate several regulatory genes involved in flowering, which are organized into a molecular network responsive to environmental cues. Several flowering genes are evolutionarily conserved between rice and Arabidopsis while other pathways with species/genus-specific genes have evolved independently and confer specific characteristics to flowering responses (Cho et al. 2017).
At least, two orthologs of FT are available in rice: Heading date 3a (Hd3a) and RICE FLOWERING LOCUS T (RFT). Hd3a and RFT are responsible for the induction of flowering under short-day (SD) and LD conditions, respectively (Sun et al. 2014). Hd3a is regulated by Hd1, a homolog of CO in rice. Hd1 activates Hd3a under SD conditions, but not under LD conditions. Under LD conditions, Hd3a is down-regulated by Hd1. The repressive function of Hd1 on Hd3a may be due to the action of red-light receptor PhyB, which leads to an increase in Hd1 protein since Hd3a is inhibited by overexpressed Hd1 (Ishikawa et al. 2011).
OsGI activates Hd1 and overexpression of OsGI causes the repression of Hd3a through the induced expression of Hd1 resulting in late flowering irrespective of photoperiod, which is distinguishable from the result in Arabidopsis. Recently, a NF-YB transcription factor DAYS TO HEADING 8 (DTH8) has been shown to interact with Hd1, and the formation of the DTH8-Hd1 complex is essential for the transcriptional repression of Hd3a through the increased H3K27me3 of Hd3a chromatin in LD (Du et al. 2017).
Both Hd3a and RFT are activated by a rice-specific gene Early heading date 1 (Ehd1) which encodes a B-type response regulator (Doi et al. 2004). The flowering time of rice is delayed under both LD and SD conditions if the Ehd1 is mutated. Expression level of Ehd1 is crucial for its function and, several flowering regulators are involved in the Ehd1-dependent pathway. Ghd7 that encodes a CONSTANS, CO-Like, and TOC (CCT) domain protein, represses Ehd1 under LDs. Previous studies showed that Ghd7 interacts with Hd1 to suppress the expression of Ehd1 (Nemoto et al. 2016). The Ghd7 itself is suppressed by a PHD finger protein Early heading date 3 (Ehd3) (Sun et al. 2014). Recently, it was demonstrated that OsGI and phytochromes antagonistically regulate Ghd7 protein stability (Zheng et al. 2019b); OsGI interacts with Ghd7 promoting the degradation of Ghd7, while phytochromes compete with OsGI in binding to Ghd7. Thus, under the non-inductive LDs, phytohormones prevent the degradation of Ghd7, resulting in delayed heading date of rice. Another putative repressor of Ehd1 is Oryza sativa LEC2 and FUSCA3 Like 1 (OsLFL1) which encodes a B3 transcription factor (Peng et al. 2008). Ehd1 is activated by OsMADS51 and RICE INDETERMINATE 1 (RID1) (Park et al. 2008). OsMADS51 acts downstream of OsGI to activate Ehd1 (Kim et al. 2007) and also the DTH8-Hd1 module seems to act as a flowering activator under SDs (Du et al. 2017).
Besides Hd1 and Ehd1, there are some other regulators of Hd3a and RFT1. For example, DTH2 activates Hd3a and RFT1 under LDs whereas OsCO3 activates Hd3 and RFT1 under SDs (Kim et al. 2008; Wu et al. 2013). The Hd3a is also positively and negatively regulated by Oryza sativae DNA-binding with one finger 12 (OsDof12) and Oryza sativae pseudo-response regulator 37 (OsPRR37), respectively (Koo et al. 2013; Li et al. 2009).
Histone modifications at chromatins of key flowering genes such as FLC and FT are crucial for flowering regulation in Arabidopsis. Although no FLC orthologs are available and no vernalization is required for flowering in rice, histone modifications of rice FT orthologs such as Hd3a, RFT and other floral regulators play important roles in flowering time control (Komiya et al. 2008). Several genes encoding histone methyltransferase have been reported to regulate the heading time of rice by acting on specific flowering regulators. The SET domain protein SDG724 (SET domain group protein 724) is involved in the H3K36me2/3 of RFT1 and OsMADS50 (Sun et al. 2012a). Another SET domain protein SDG725 is involved in the H3K36me2/3 of RFT1, OsMADS50, Ehd3 and Hd3a (Sui et al. 2013) and the SDG708 regulates the H3K36m3 level of Hd3a, RFT1 and Ehd1 (Liu et al. 2016). All these three SET domain group proteins promote the flowering of rice. LC2/OsVIL3 (VIL, VERNALIZATION INSENSITIVE 3-LIKE), a putative component of rice PRC2 complex as a PHD finger protein suppresses the Oryza sativae Late Flowering (OsLF) expression via H3K27me3 (Sun et al. 2014). Since OsLF suppresses Hd1, LC2/OsVIL3 also promotes flowering of rice under SDs. Another PHD finger protein OsVIL2 and a C2H2 zing-finger protein OsEMF2b, which are possible members of rice PRC2 complex, suppress OsLFL1 via H3K27me3 (Yang et al. 2013). Suppression of OsLFL1 is required for the expression of Ehd1, RFT1 and Hd3a. In short, similar to that of Arabidopsis, a putative rice PRC2 complex is also involved in the floral induction of rice in spite of different target genes for chromatin modifications.
4 Flowering control in orchids
4.1 Effect of phytohormones in the floral transition of orchids
Orchids have a worldwide distribution, and they occur in a wide variety of habitats. Thus, difference in the regulation of flowering among distinct species in the family may exist that evolved based on their natural habitats. The effect of ambient temperature or photoperiod on the flowering of different orchids has been reported (Hsiao et al. 2011). Moreover, effects of phytohormones on flowering in different orchids have been also investigated (Blanchard and Runkle 2008; Goh and Yang 1978). However, the molecular genetic mechanisms underlying the flowering of orchids are still largely unknown.
Most orchids take several years to reach the reproductive stage from the juvenile stage. Phalaenopsis orchids, for example, usually begin to bloom after the production of three to five leaves. In the flowering season, the floral spike (inflorescence) protrudes from the axillary buds of the fourth node below the apical leaf while other axillary buds are maintained in dormancy. The mechanism of differential commitment of distinct axillary buds for flowering remains elusive. At the early stage of flowering, the axillary buds are enlarged and then protrude from the base of a leaf, which takes about 3 to 4 weeks. Subsequently, the bud is elongated to be a floral spike.
Benzylaminopurine (BA), a synthetic cytokinin, triggers the floral induction of monopodial (e.g., Phalaenopsis) and sympodial (e.g., Dendrobium) orchids whereas auxin suppresses the effect of BA (Goh and Yang 1978). The effect of BA on floral induction can be enhanced when combined with gibberellic acid (GA3) despite GA3 alone not having an effect on floral induction (Hew and Clifford 1993). However, GA3 treatment delayed flowering of Cymbidium niveo-marginatum prepared for in vitro early flowering (Kostenyuk et al. 1999).
Phalaenopsis and Doritaenopsis orchids applied with BA produce visible inflorescences 3 to 9 days earlier than those of the control. Notably, the effect of BA on flowering promotion was inhibited when plants were incubated at 29 °C indicating that low ambient temperature is still required for floral induction of Phalaenopsis and Doritaenopsis even in the presence of BA (Blanchard and Runkle 2008).
The existence of abscisic acid (ABA) in different tissues of Phalaenopsis has been investigated. It was revealed that dormant axillary buds have relatively higher level of free ABA whereas free or bound forms of ABA were not detected in floral shoots (Wang et al. 2002). Moreover, exogenously applied ABA to the stem of Phalaenopsis repressed the formation of floral spikes even under inductive low ambient temperature conditions indicating that ABA may play a role in inhibiting floral induction in the orchid. In summary, the two phytohormones, cytokinin and ABA are involved in flowering regulation in orchids; however, ambient temperature seems to be a more critical factor for floral transition in Phalaenopsis.
4.2 Floral transition of orchids is regulated by ambient temperature and photoperiod
The floral induction of Phalaenopsis is promoted by low ambient temperature (usually lower than 26 °C). However, it can be reversed if the ambient temperature is increased (Blanchard and Runkle 2006). Floral induction based on the changes of ambient temperature has also been studied in Dendrobium, Miltoniopsis and Zygopetalum (Campos and Kerbauy 2004; Lopez and Runkle 2006; Lopez et al. 2003).
In model plants such as Arabidopsis and rice, photoperiod is one of the most critical factors controlling flowering time. However, in general, photoperiod has limited effects on flowering in orchids. Floral initiation regulated by photoperiod has been observed in just a few orchid species. In Doritis pulcherrima (now Phalaenopsis pulcherrima), floral spikes were initiated more efficiently in the 9 h light /15 h dark cycle than that of 12 h light /12 h dark under the 30 °C light and 20 °C dark conditions (Wang et al. 2003). In Miltoniopsis orchids, SD incubation at 23 °C before moving to cool temperature (11–14 °C) facilitated flowering (Lopez and Runkle 2006). However, during the cool temperature treatment, different photoperiods had no significant effect on flowering implying that ambient temperature may play a prominent role in flowering of Miltoniopsis. On the other hand, the floral induction in Psymorchis pusilla was enhanced in prolonged day-length indicating that P. pusilla is a quantitative LD plant (Vaz et al. 2004). The effect of photoperiod on flowering appears to vary among different orchid species possessing great diversity in adaptation. Moreover, most orchids are native to tropical areas where photoperiod does not change dramatically during the year. Therefore, it is reasonable to expect that photoperiod may not influence the flowering of orchids significantly.
Many orchids are epiphytic plants. Shortages of nutrients and water are frequent in their living environment. Although the orchid uses the crassulacean acid metabolism (CAM) as the way for carbon fixation to adapt to the arid conditions (Silvera et al. 2009), flowering still requires a lot of energy. Thus, the right timing for flowering with the best physiological status is important for successful sexual propagation. In addition, in the wild most orchids have particular pollinators; the flowering time should be consistent with the appearance of their pollinators. Therefore, sensing ambient temperature can be a good strategy for successful pollination if their pollinators appear only in a particular season.
4.3 The flowering-related genes of Phalaenopsis
Based on the results obtained from analyses of sequence similarities, spatiotemporal expression patterns and functional studies using heterologous expression systems, many orchid flowering candidate genes have been reported. Although the flowering regulatory networks and their various components revealed in Arabidopsis and other model plants may provide clues to estimate functional roles of the players in orchid flowering, functional studies on target genes using target orchid species are absolutely required to verify their functions in orchid flowering.
Recently, an FT gene in Phalaenopsis aphrodite (PaFT1) has been characterized (Jang et al. 2015). Flowering of P. aphrodite is induced by prolonged low ambient temperature (< 26 °C) whereas photoperiod has no significant effect. Expression of PaFT1 is induced by low ambient temperature and the flowering time of P. aphrodite was delayed by transient knockdown of PaFT1. Ectopic expression of PaFT1 by a phloem-specific Arabidopsis SUC2 promoter suppressed the delayed flowering caused by overexpression of SVP as well as an active FRI allele in Arabidopsis (Truernit and Sauer 1995); moreover, overexpression of PaFT1 also triggered precocious heading in rice. Physical interaction between PaFT1 and PaFD also has been demonstrated. All these indicate that PaFT1 is an important floral integrator in Phalaenopsis with a similar mode of FT action in Arabidopsis (Fig. 2).
PhapLFY, a LFY gene from P. aphrodite also has been isolated and characterized (Jang 2015). Induced expression of PhapLFY driven by Arabidopsis LFY promoter rescued the abnormal floral phenotype of Arabidopsis lfy-32 mutant and induced early heading in rice by overexpression. In addition, a CO-like gene, PhalCOL was isolated from P. hybrida (Zhang et al. 2011). Expression of PhalCOL was observed in all organs throughout development. Of note, high level accumulation of its transcripts was detected in the stem during the transition from vegetative to reproductive growth. Moreover, overexpression of PhalCOL in tobacco induced an early-flowering phenotype suggesting that PhalCOL plays a crucial role in promoting flowering of Phalaenopsis. Recently, the homolog of FVE in P. aphrodite also has been characterized (Koh et al. 2018). Expression of PaFVE was induced by low ambient temperature and ectopic expression of PaFVE in Arabidopsis generated an early-flowering phenotype. Furthermore, a recent report demonstrated that transcripts of Spike activator 1(SPK1) encoding a bHLH transcription factor are highly accumulated at the meristematic tissues including axillary bud responding to the floral inductive low ambient temperature in P. aphrodite (Lin et al. 2019) indicating it may play a role in early axillary bud development and/or spike initiation of the orchid. To explore candidate genes which may function in flowering control of Phalaenopsis, expression profiles of axillary buds from plants treated with or without cold temperature were analyzed (Huang et al. 2016). The results showed that, in addition to the FT, LFY, AP1 and SOC1, genes involved in the GA biosynthetic pathway were also up-regulated by low ambient temperature. In another study, gene expression in spikes of Phalaenopsis orchids under warm day/cool night and daily warm temperature was analyzed (Li et al. 2014). Many candidate flowering-related genes including FT, AP1 and AP2 were found to be up-regulated in the induced spikes. In addition, highly accumulated transcripts of genes encoding KNOX1 protein, R2R3-like MYB transcription factor, adenosine kinase 2, S-adenosylmethionine synthetase, dihydroflavonol 4-reductase and naringenin 3-dioxygenase were observed although their functions in orchid flowering remain elusive.
The mechanism of flowering control also has been investigated in Dortiaenopsis, an intergeneric hybrid between the orchid genera Doritis and Phalaenopsis (Dor × Phal). DhFVE, a Dortiaenopsis ortholog of FVE has been identified and characterized (Sun et al. 2012b). Flowering of Dortiaenopsis is accelerated by low ambient temperature and the accumulation of DhFVE transcript reaches higher levels in the vegetative organs such as roots, stems, and leaves during the transition from vegetative to reproductive growth. Moreover, low ambient temperature-induced accumulation of DhGI1 transcripts was also reported, which may be involved in the floral initiation of Doritaenopsis (Luo et al. 2011).
In addition, ELF4 family genes including DhELF2, DhELF3 and DhELF4 have been identified in Dortiaenopsis (Chen et al. 2015). Arabidopsis ELF4 is regarded as a key player acting in the integration of photoperiod, circadian regulation and flowering. Ectopic expression of DhELF2, 3, or 4 delayed the flowering time in Arabidopsis.
4.4 The flowering-related genes of Dendrobium
Flowering of Dendrobium nobile is promoted but not required by low ambient temperature (Campos and Kerbauy 2004). The orthologs of FT and MFT identified in Dendrobium were designated as DnFT and DnMFT (Li et al. 2012). Expression of DnFT was increased in leaves but decreased in axillary buds under low temperature (Li et al. 2012; Wen et al. 2017). In contrast, expression of DnMFT was not affected by low temperature. Overexpression of DnFT resulted in early-flowering in Arabidopsis. So far, experiments using homologous expression system have only been applied in Dendrobium Chao Praya Smile, where DOFT overexpression causes early flowering (Wang et al. 2017). Interestingly, DOFT is also involved in the formation of pseudobulb. FT-INTERACTING PROTEIN1 (FTIP1) is known to be specifically required for FT transport from companion cells to sieve elements through plasmodesmata in Arabidopsis (Liu et al. 2012). Recently, DOFTIP1 has been identified as an interacting protein of DOFT indicating DOFT and DOFTIP1 are conserved for the flowering of Dendrobium (Wang et al. 2017; Fig. 2). In addition, an ortholog of SOC1 in Dendrobium has also been identified designated as DOSOC1 (Ding et al. 2013). Expression of DOSOC1 was particularly induced in the shoot apex at the floral transition stage and the overexpression of DOSOC1 in both Arabidopsis and Dendrobium caused early flowering. The role of DOAP1, the AP1 gene in Dendrobium, has been reported to be similar to its ortholog of Arabidopsis (Sawettalake et al. 2017). Through the investigation of gene expression between vegetative and transitional shoot apical meristems in Dendrobium grex Madame Thong-In, several genes that code for transcription factors including a MADS-domain protein of the AP1/AGL2 family, a class I KNOX protein and a homolog of the Drosophila SEVEN-UP were found to be differentially expressed during floral transition (Yu and Goh 2000). Especially, the KNOX gene encoding a knotted1-like homeobox protein was designated as Dendrobium orchid homeobox 1 (DOH1) and known to play an important role in the maintenance of proper function of SAM. In tissue culture condition, the expression of DOH1 is gradually up-regulated in the apical meristem during orchid vegetative development, whereas it is down-regulated with the progress of reproductive growth (Yu et al. 2000). Overexpression of DOH1 antisense transcript promoted flowering in Dendrobium. DOMADS1, another MADS-box gene belonging to AP1/AGL19 family in Dendrobium was preferentially expressed in transitional SAM during floral transition. Interestingly, expression of DOMADS1 was induced in the transgenic plant containing p35S::antisense DOH1 implying that DOH1 is a potential repressor acting upstream of DOMADS1 in the flowering control of Dendrobium orchids.
4.5 The flowering-related genes of Oncidium
High ambient temperature (30 °C) and LD conditions promote the flowering of Oncidium. Of note, the response of flowering to the changes of ambient temperature in Oncidium is contrary to that in Phalaenopsis. The FT and TFL1 identified in Oncidium were designated as OnFT and OnTFL1, respectively (Hou and Yang 2009). Expression of OnFT is detected in axillary buds, leaves, pseudobulbs and flowers, and is also induced by light. On the contrary, the expression of OnTFL1 is detected only in axillary buds and pseodobulbs and is not affected by light. Ectopic expression of OnFT caused early-flowering in Arabidopsis and could also rescue late-flowering of Arabidopsis ft-1 mutants. Arabidopsis TFL1 acts as a floral repressor and ectopic expression of OnTFL1 in Arabidopsis also resulted in late-flowering (Kim et al. 2013). The expressions of TFL1-like genes in some neotropical orchids have also been examined (Ospina-Zapata et al. 2020). The results showed the expression patterns of TFL1-like genes are diverse in selected orchid species and these genes have been suggested to play a role in repressing floral transition.
An Oncidium homolog of Arabidopsis AGL6, OMADS1 has been identified. The transcript of OMADS1 was detected in the apical meristem and floral organs (Hsu et al. 2003). Transgenic Arabidopsis plants overexpressing OMADS1 exhibited early flowering with up-regulated expression of FT, SOC1, LFY and AP1. Moreover, Thiruvengadam et al. demonstrated that ectopic expression of OMADS1 in Oncidium also caused early flowering (Thiruvengadam et al. 2012).
Recently, ascorbic acid (AsA) content has been exhibited to play a key role in the floral transition of Oncidium in response to thermal stress (30 °C more than 14 days) (Chin et al. 2014). Under thermal stress, the level of reactive oxygen species (ROS, e.g., H2O2) was highly elevated and the AsA redox ratio (reduced form of AsA to dehydroascorbate/DHA) was reduced with a significant increase of cytosolic ascorbate peroxidase 1 (cytAPX1). The oxidation of AsA to DHA by ascorbate peroxidase is the pivotal reaction to remove hydrogen peroxide. This report suggested that the AsA/dehydroascorbate redox ratio may function as an endogenous signal to induce the flowering in Oncidium responding to high ambient temperature. Furthermore, reduced glutathione (GSH) redox ratio was also shown to be linked to the decline in the AsA redox ratio by reduced expression of GSH metabolism-related genes such as glutathione reductase (GR1), γ-glutamylcysteine synthase (GSH1) and glutathione synthase (GSH2) to affect flowering in Oncidium orchid (Chin et al. 2016). Collectively, the results indicate that a stress-response mechanism is likely to be leveraged in Oncidium orchids to regulate floral transition.
4.6 The flowering-related genes of other orchids
Recently, many flowering-related genes have been identified in Cymbidium and Erycina through genome-wide studies; i.e., homologs of FT, FCA, FYF, DCL3A, and VIN3 in Cymbidium (Li et al. 2013) and many MADS-box genes in Erycina (Lin et al. 2016). Prolonged low ambient temperature is also required for the flowering of Cymbidium. The expression of SVP-like genes in C. goeringii (CgSVP) is negatively regulated in response to low ambient temperature suggesting CgSVP suppresses floral induction during vegetative growth (Yang et al. 2019; Fig. 2). The functional roles of these genes in the flowering control in Cymbidium or Erycina need to be further investigated.
5 Conclusion and perspectives
Precise control of flowering time in response to environmental cues is essential for successful reproduction in plants. Thus, regulatory networks involved in sensing and responding to changes in photoperiod and/or temperature for floral induction are necessarily required and have evolved for distinct plant species based on their habitats. In orchids, it seems that the flowering network has evolved in a sophisticated manner to sense subtle differences in ambient temperature although many orchids are photoperiod-insensitive in floral induction. Also, all orchids are perennial plants, different from the annual model plant, Arabidopsis. Recent studies demonstrating potential mechanisms underlying flowering control in a perennial plant Arabis alpina have been reported (Bergonzi et al. 2013; Wang et al. 2011). In A. alpine, AaTFL1 acts as a flowering repressor to ensure A. alpina is matured enough to go into the reproductive stage. It is worth investigating whether the TFL1 in orchids also plays a role in determining the dormancy of axillary buds. Recently, the TFL1-like pathway has been implicated in the repressive function of floral induction in Dendrobium through gene expression studies (Zheng et al. 2019a). In addition, histone modifications are crucial for regulations of flowering-related genes in model plants. Thus, chromatin modifications are also likely to be a mechanism controlling the expression of flowering genes in orchids. Furthermore, a mechanism linked to stress-responses may be a strategy adapted by orchids to regulate floral transition. Recently, a protocol for the transformation of Phalaenopsis orchids was reported (Hsing et al. 2016), which is a breakthrough for functional studies on Phalaenopsis flowering genes. Using the protocol, we generated transgenic Phalaenopsis orchids overexpressing a rice florigen gene, Hd3a (Fig. 3). The transgenic orchids produced spikes without vegetative growth during the transformation, which is similar to the phenotype of transgenic rice overexpressing Hd3a (Jang et al. 2017). Also, the result demonstrated that increased expression level of florigen is able to overcome the requirement of low ambient temperature for the flowering of P. aphrodite. We believe that this result is an example showing huge potential for functional studies of Phalaenopsis genes using the homologous system.
In short, it seems that there are various mechanisms for flowering control among different orchid species. Therefore, understanding of the flowering control in distinct orchids may provide a insights into strategic changes in the developmental evolution of the flowering of plants.
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Acknowledgements
The authors are grateful to Miranda Loney for English editing and apologize to all those people whose work was omitted through oversight or space constraints.
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This review paper was financially supported by the National Institute of Horticulture and Herbal Science, RDA, Korea and, in part by the World Vegetable Center Korea Office budget (WKO #10000379) and the long-term strategic donors to the World Vegetable Center: Republic of China (Taiwan), UK aid from the UK government, United States Agency for International Development (USAID), Australian Centre for International Agricultural Research (ACIAR), Germany, Thailand, Philippines, Korea and Japan.
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S.L.W. and S.J. conceived of the presented work. S.L.W. drafted the manuscript and S.J. and S.L.W. revised the manuscript. S.L.W., H.R.A. and S.J. collected the background information. C.G.T. and S.J. performed experiments. All authors read and approved the final manuscript.
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Wang, SL., An, H.R., Tong, CG. et al. Flowering and flowering genes: from model plants to orchids. Hortic. Environ. Biotechnol. 62, 135–148 (2021). https://doi.org/10.1007/s13580-020-00309-8
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DOI: https://doi.org/10.1007/s13580-020-00309-8