Abstract
One of the most prevalent infectious diseases identified in both communities and hospitalized patients is urinary tract infection (UTI). Enterococcus is evolved into a clinically pertinent uropathogen due to its evolving resistance to multiple antimicrobial agents.This study, detects antimicrobial susceptibility patterns of Enterococcus species and molecular detection of Enterococcus faecalis from patients with urinary tract infections. In this cross-sectional observational study, 165 urine samples were obtained from clinically diagnosed patients with UTIs of different ages and gender. Enterococcus species were identified by standard microbiological procedure and PCR (by using species-specific primers for Enterococcus faecalis). A modified Kirby Bauer Disc diffusion method was used to identify the antimicrobial susceptibility pattern following Clinical and Laboratory Standards Institute (CLSI) guidelines. Out of 165 urine samples, 134 samples yielded positive cultures. Enterococcus species were isolated from 23 (17.1%) urine samples. Among all Enterococcus, 16 (69.6%) isolates were E. faecalis, detected by PCR assay. A higher (30.4%) proportion of Enterococcus-positive patients were from the age group 48–57 years and female patients (78.2%) had a higher prevalence. Enterococcal infection was found in 56.5% of non-catheterized patients and 43.5% of catheterized patients. Vancomycin and linezolid (78.3%) and meropenem (73.9%) sensitivity was prevalent among all Enterococcus species. They showed 100% resistance towards ceftriaxone, cefixime 95.7%, cefuroxime 91.3%, azithromycin 82.6%. This research indicated the occurrence of Enterococcus species and the advent of multidrug-resistant E. faecalis in patients with UTIs. Routine speciation and antimicrobial susceptibility testing of Enterococcus in various clinical samples is encouraged.
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Introduction
Over the past few decades, Enterococcus has emerged as an essential multidrug-resistant microorganism among all human pathogens. They are normal inhabitants of the gastrointestinal tract intestinal tract, oral cavity, and genitourinary tract of both humans and animals. Enterococcus was previously classified as group D streptococci because they have the group D cell wall antigen. Based on research using DNA hybridization and 16S rRNA sequencing, they were separated from the genus Streptococcus and reclassified as a distinct genus, "Enterococcus", in the 1980s [1]. They are facultative anaerobes, Gram-positive, oval cocci arranged in pairs or short chains. They can endure extreme conditions, such as high salt concentrations and a wide range of temperatures from 10 °C to 45 °C. Among different Enterococcus species, 90–95% of clinical enterococcal isolates were caused by Enterococcus faecalis. Distinctly more often than E. faecalis, E. faecium exhibits resistance to different antibiotics[2]. Before the 1990s, Enterococcus was first identified as a significant contributor to bacterial endocarditis [3]. Now it is considered an ascendant nosocomial pathogen, the second most frequent organisms found in catheter-associated bloodstream and urinary tract infections and from skin and soft-tissue infections [4]. Other infections caused by Enterococcus include meningitis, neonatal sepsis and intra-abdominal and pelvic infections [2]. The most prevalent type of enterococcal clinical disease affects the urinary tract and the Enterococcus species is regarded as a significant uropathogen [5].
Enterococcal infections occur through adhesion, colonization of the urinary tract, evasion of the host immune response and dissemination of the bacteria in the body. Enterococcus possess numerous virulence factors including enterococcal surface protein (Esp), gelatinase (GelE), collagen-binding protein (Ace), cytolysin (CylA) etc. These are crucial to the virulence potential of certain enterococcal species and contributes to bacterial adherence to host cells and in biofilm formation [6]. Additionally, the rapid acquisition of antibiotic resistance makes Enterococcus challenging to eradicate.
Urinary Tract Infection (UTI) is one of the most common infectious diseases and a substantial cause of morbidity worldwide. Elderly adults with bacteremia often have urinary origins in about 46.7% of cases [7]. In acute urinary tract infections, E. faecalis is frequently identified [8]. It also commonly contributes to catheter-associated and chronic urinary tract infections [9]. Enterococcal infections are more common in elderly patients [10]. In immunocompromised patients, enterococcal infection is associated with a higher mortality rate [11].
In public healthcare facilities worldwide, the prevalence of antibiotic-resistant Enterococcus, particularly Vancomycin-Resistant Enterococcus (VRE), is a persistent clinical concern [12]. Since this strain exhibits resistance to widely used antibiotics and transfers resistant genes to other bacteria, it is considered a superbug [13]. Vancomycin-Resistant Enterococcus was categorized as a high-priority pathogen and "serious threat" by the World Health Organization (WHO) and the Centers for Disease Control and Preventative (CDC), emphasizing the need for enhanced monitoring and prevention activities [14, 15]. At Bangabandhu Sheikh Mujib Medical University (BSMMU), enterococci identified from urine samples significantly increased over the previous five years (2003–2008). In 2003 and 2008, the prevalence of Enterococcus isolates was 11.38% and 13.29%, respectively [16]. Two different studies were conducted at BSMMU and Dhaka Medical College (DMC), where the prevalence of enterococcal urinary tract infection was noted at 8.44% and 14.47%, respectively [17, 18]. The phenotypic characterization is a critical component of the basic approach to Enterococcus identification. However, due to the phenotypic and biochemical similarities, species identification of Enterococcus is difficult and requires several days to complete [19]. The ddl gene, which codes for the D-alanine-D-alanine ligase enzyme (D-Ala: D-Ala), has been developed as one of many molecular techniques for identifying Enterococcus to species level [20]. The molecular epidemiology of clinical enterococcal isolates is easier and more precisely analyzed using the Polymerase Chain Reaction (PCR) technique. Different investigations have confirmed that species-specific PCR primers for primers ddl E. faecalis can identify enterococcal species.
Considering the diverse impact of enterococcal infection, this study is, therefore, intended to provide admissible data on antimicrobial susceptibility patterns of Enterococcus species and molecular detection of Enterococcus faecalis in urinary tract infection which would be beneficial to guide empirical treatment.
Material and Methods
This laboratory-based cross-sectional study was conducted in the Department of Microbiology and Virology in collaboration with the Department of Medicine and Department of Obstetrics and Gynaecology of Sylhet M.A.G. Osmani Medical College, Sylhet, Bangladesh, from 1st July 2020 to 30th June 2021. Urine samples collected from 165 patients diagnosed with urinary tract infections.
Data Collection
Patients clinically diagnosed with UTI were included in the study, regardless of their age and sex. Samples were collected from the outpatient and inpatient Department of Medicine and Department of Obstetrics and Gynaecology at Sylhet M.A.G. Osmani Medical College, Bangladesh,using a non-probability consecutive sampling technique. A detailed history was taken after patients who met the inclusion criteria who provided written informed consent. The study excluded patients under 18 years and those on antibiotic for the previous seven days.
Specimen Type and Collection Method
Patients were instructed to use a sterile wide mouth container or test tube and take all aseptic precautions while collecting 10–20 ml of freshly void clean, midstream urine. Prior to collection, instructions on how to collect the proper sample in a sterile container aseptically were provided.
In catheterized patient, after cleaning with an alcohol pad and clamp placement on the catheter with all aseptic precautions, about 10–20 ml of urine was aspirated with a syringe and needle directly from the part of the tubing proximal to the clamp. After correct labeling,the collected samples were transported as soon as possible to the microbiology laboratory.
Microscopic Examination of Urine
All urine samples were examined microscopically to detect pyuria. In addition, the presence of pus cells of more than five cells/HPF in centrifuged urine was used to identify bacterial infection.
Culture of Urine
The specimens were inoculated on the labeled Blood agar and Chromogenic agar media plates by using calibrated wire loop holding 0.004 ml of well mixed uncentrifuged urine.
Identifications by Colony Characteristic
Bacterial colony growth was presumptively identified on Blood agar and Chromogenic agar with the following characteristics. In Blood Agar, colonies were small non-haemolytic; some are β –haemolytic. In Chromogenic agar, a blue colored colony was observed [21].
Isolation and Identification of the Organism
Enterococcal isolates were confirmed by growth characteristics in the culture media, microscopic examination of stained smear and some biochemical tests.
Microscopic Examination of Bacterial Morphology
Oval Gram-positive cocci in pairs or short chains noted and selected for biochemical test.
Biochemical Test
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Catalase test–Enterococcus were catalase negative.
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Bile Esculin Test- Diffuse blackening of the slant within 24–48 h indicate esculin hydrolysis in the presence of 40% bile salts.
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Salt Tolerance Test (6.5% NaCl Broth)- Medium was observed for growth by the turbidity seen after dispersing any sediment. Enterococcus species was salt-tolerant.
Antimicrobial Susceptibility Test
Samples that showed significant colony count were considered in this study. In addition, the sensitivity pattern of the isolated Enterococcus species was tested for Antimicrobial Susceptibility by the modified Kirby–Bauer Disk Diffusion method as described by the Clinical and Laboratory Standards Institute [22]. All the isolates were tested for antimicrobial susceptibility for the following antibiotics: Amikacin (30 µg), Gentamycin (10 µg), Nitrofurantoin (300 µg), Meropenem(10 µg), Azithromycin (15 µg), Cotrimoxazole (25 µg), Ciprofloxacin (1 µg), Ceftriaxone(30 µg), Cefuroxime (30 µg), Cefixime (5 µg), Vancomycin (30 µg), Linezolid (10 µg).
Molecular Detection of Enterococcus faecalis Specific ddl (D-alanine-D-alanine ligase) Gene
For the PCR technique, at first, DNA was extracted using Monarch Genomic DNA Purification Kit (New England Biolabs, USA) according to the manufacturer’s instructions. Next, extracted DNA was used for thermal cycling to amplify the target gene using a PCR mixture composed of master mix, forward primer, reverse primer, and template DNA.
Thermal Cycling to Amplify Enterococcus faecalis Specific ddl (D-alanine-D-alanine ligase) Gene and Visualization by Gel Electrophoresis
The ddl gene was amplified using the following primers obtained from Macrogen Incorporation, Korea (Table 1).
Amplification through thermal cycler
A DNA thermal cycler was used to carry out the PCR study. Each PCR run included a 10 min preheating step at 94 °C for 10 min followed by 36 cycles of denaturation at 94 °C for 1 min, annealing at 58 °C for 45 s, extension at 72 °C for 2 min with final extension at 72 °C for 10 min [23].
Gel electrophoresis and Visualization
Gel electrophoresis in 1.5% agarose gel electrophoresis was used to evaluate the PCR results. The Digigel gel documentation system was then used for viewing and photographed the target gene (Figs. 1, 2).
Ethical Considerations
The authors have entirely observed all ethical aspects of this research. Approval was obtained from the Ethical Review Committee of Sylhet MAG Osmani Medical College. All experiments were performed following relevant guidelines and regulations. Informed consent was obtained from all participants or their legal guardians before collecting urine samples. The patient's demographic characteristics were recorded in a questionnaire and their information was kept confidential.
Statistical Analysis
Demographic and clinical data were extracted from study questionnaires, and quantitative data were analyzed and displayed in an Excel spreadsheet. The association between demographic factors was assessed using Chi-square test with a p value < 0.005 considered significant. All data were processed and analyzed with the help of SPSS (Statistical Package for Social Sciences) version 26.
Results
Demographic Characteristics
From Table 2 illustrating the demographic data of the patients selected for this study, it is found that the patients’ ages (n = 165) ranged from 18 to 85 years, with a mean age of 51.4 years (SD ± 16.6 years). Interestingly, most of the patients (23.1%) were between the ages of 48 and 57. In addition, more than two-third of the patients were female (72.8 percent), while the remainder were male (27.2 percent). Regarding the place of residence, the majority of patients (74.5%) were from rural areas, while the remaining patients (25.5%) were from urban areas. It emerged that 74% of the patients belonged to the lowest socioeconomic class, while 26% were from the middle class. Notably, no patients from the upper socioeconomic class were identified in this study. In relation to UTI patients specifically, nearly half (47.3%) had undergone catheterization, and the vast majority (81.3%) of tested urine samples contained evidence of growth. Finally, 17.1% of UTI patients who tested positive (n = 134) for different bacterial pathogens belonged to the Enterococcus species, while the overwhelming majority (82.9%) of them were infected with other bacterial organism (Fig. 3).
Distribution of Enterococcus species Positive Patients Over Different Age Groups
Table 4 shows the distribution of the patients who tested positive for Enterococcus species over different age groups. According to the table, more than 70% of patients who tested positive for Enterococcus were aged 48 or older. Besides, this pathogen appears to be more prevalent among elderly and late middle-aged patients, as opposed to young adults and those in their early middle ages.
Distribution of Enterococcus species and Other Organism Positive Patients Over Gender
The distribution of urinary tract infection (UTI) patients infected with Enterococcus species and other organisms over gender and their association have been presented in Table 5. The data reveals that the majority (more than 80%) of both male and female UTI patients were affected by other bacterial organisms as opposed to Enterococcus species. Additionally, it is notable that regardless of the organisms causing the UTI, over two-thirds of the patients who tested positive for UTI were female, with the remaining third being male. However, Pearson’s Chi-square test’s p value (p = 0.615) indicates that the association between the gender of the patients tested positive and the type of bacterial organism that affected them is not statistically significant.
Distribution of Enterococcus species and Other Organism Positive Patients Over Their Socio-Economic Condition
Table 6 depicts distribution of patients who were tested positive for Enterococcus species and other organisms based on their socioeconomic status and how they are interconnected. According to the data presented in the table, it is clear that fewer than 25% of UTI patients in the lower and middle socio-economic categories tested positive for Enterococcus species, while more than 75 percent were infected with other organism. In addition, for both types of organism causing urinary tract infection, over two-third of the patients belonged to the lower socio-economic category, while the remainder were from the middle socio-economic class. Nonetheless, test result (p = 0.6) reveals no significant correlation between the type of infectious organism and the socioeconomic status of the patients.
Distribution of Enterococcus species and Other Organism Positive Patients According to Catheterization
Table 7 illustrates how patients tested positive for Enterococcus species and other organisms and catheterization are distributed and associated with one another. From the table, it is evident that regardless of whether the UTI patients were catheterized or non-catheterized, the vast majority (over 80%) of the patients had contracted infections caused by other organisms, while fewer than 20% were infected with Enterococcus species. Remarkably, UTI patients without catheters were found more susceptible to Enterococcus species and other organisms than those with catheters. Nevertheless, the test result (p = 0.821) shows no significant relationship between the type of infectious organism and the catheterization status of the UTI patients.
Antimicrobial Susceptibility Patterns of Identified Enterococcus species
The antimicrobial susceptibility patterns of 23 distinct Enterococcus species are shown in Table 8. It displays the percentage of isolates that were sensitive, intermediate, or resistant to the antimicrobial agents mentioned. Of the 23 species tested, 43.5% were susceptible to amikacin, while a staggering 56.5% were resistant. With 52.2% of the species being sensitive and only 47.8% being resistant to gentamycin, it was found more efficacious than amikacin. Vancomycin and linezolid had the highest efficacy among all the enumerated antimicrobial agents, with 78.3% of the species showing sensitivity, while 21.7% were still resistant. Moreover, meropenem was effective against 73.9% of the tested species, and 26.1% exhibited resistance. Finally, the efficacy of ciprofloxacin was similar to that of azithromycin, with 17.4% of species being sensitive and 69.6% being resistant. Ceftriaxone and cefixime demonstrated no efficacy against any of the tested species.
Discussion
Urinary tract infection as a community-acquired bacterial infection is increasing in prevalence. Among numerous bacterial pathogens, Enterococcus continue to emerge as significant uropathogens that are difficult to treat due to the increasing prevalence of antibiotic resistance. It is one of the most important pathogens affecting individuals of all ages. E. faecalis is the most common species of the Enterococcus genus that is associated with human enterococcal infection. Due to their significance in causing urinary tract infections and the increasing antibiotic resistance, it was essential to investigate the antimicrobial susceptibility patterns of Enterococcus species isolated from patients with urinary tract infections. Hence, a cross-sectional observational study was conducted in Sylhet MAG Osmani Medical College, Sylhet. Total 165 individuals,clinically diagnosed with urinary tract infections were included in this study. All patients' urine samples were collected and tested using standard microbiological procedures. From the 134 growth-positive samples, 23 cases (17.1%) of urinary tract infections were determined to be caused by Enterococcus species. This result is consistent with a study conducted in Bangladesh by Ahsan et al. (2020) where the proportion was 14.47% [18]. Another study by Raj et al. (2019) also reported a prevalence of Enterococcus spp. of 13.77% among patients with UTI [24]. The higher rate of enterococcal infection in this study may be attributable to the fact that the patients were from a tertiary care hospital, and many had catheters.
Moreover, 16 (69.6%) of the 23 Enterococcus species detected phenotypically in this study tested positive for the Enterococcus faecalis specific ddl (D-Alanine-D-Alanine ligase) gene when confirmed by PCR. Interestingly, these findings agree with a study performed in Bangladesh, where PCR detected 71.43% of E. faecalis-specific ddl genes [18]. Furthermore, two other studies in Iran and Bangladesh discovered E. faecalis-specific ddl genes at 62.5% and 71.42%, respectively [23, 25]. Moreover, another study found that only 56.12% of the ddl gene was specific to E. faecalis [26].
As indicated in Table 3, the highest percentage (30.4%) of patients who tested positive for Enterococcus were in the age group of 58–67 years. This result is consistent with the findings of an investigation conducted in Bangladesh by Islam and Shamsuzzaman [27], who noticed 37.50% of Enterococcus-positive patients within the age range of 41–60 years. Similarly, a study in India found a prevalence of 29.3% of enterococcal infections in patients aged 61 and older [28]. Another study found a higher incidence of enterococcal infections among those aged 51–75 [29]. This may be because immunity declines with age, leading to increased bacterial colonization. In addition, elderly patients may have a history of obtaining care from multiple facilities, which could serve as a source of the infection's spread. Moreover, postmenopausal women are more prone to UTIs. Several factors, including bladder or uterine prolapse resulting in insufficient bladder emptying, lower estrogen levels, and altered vaginal flora, enable diverse uropathogens, such as Enterococcus, to colonize the peri-urethral region [30].
As shown in Table 4, females (78.2%) had a higher prevalence of Enterococcal infection than males (21.8%). This finding is consistent with another study by Srivastava et al. (2013), who reported a prevalence of Enterococcal infection among females 72% than males 28% [31]. This study's findings may be explained by the fact that female anatomy, with its short urethra and close proximity to the anus, renders females more susceptible to UTIs than males.
In addition, 78.2% of the UTI patients chosen for this study were from rural areas, with the remaining patients coming from urban settings. This result is in agreement with a prior study by Majumder et al. (2018), which also observed a higher percentage of culture-positive cases in rural areas (67%) than in urban areas (33%) [32]. In addition, according to this study’s finding in Table 5, over two-thirds (69.6%) of the Enterococcus-positive patients belonged to a lower socioeconomic background, while fewer than a third (30.45%) were from the lower middle class. No patient was from a more affluent socioeconomic stratum. UTI is related with malnutrition, poor sanitation, and low socioeconomic position, and these conditions are prevalent in rural areas. No participants from higher socioeconomic backgrounds were found because this study was conducted in a hospital offering tertiary care.
Besides, the results of this research, as presented in Table 6, revealed that the prevalence of enterococcal urinary tract infection was higher among the non-catheterized patients (56.5%) than the catheterized patients (43.5%). This result is similar to Raj et al.’s [24] study, which reported a 67.7% prevalence of enterococcal infection among non-catheterized UTI patients and a 32.3% prevalence among catheterized UTI patients. Furthermore, in another investigation conducted by Shrestha et al. [33], 54.11% of patients without catheters had an Enterococcus faecalis mediated UTI, compared to 34.28% of catheterized patients. Transmission of Enterococcus from a hands of a doctor or other health care provider to a patient may involve direct inoculation to urinary catheters should be attributed for the greater prevalence of enterococcal infection more likely explanation, however, is that healthcare-associated strains invade patients' GI tracts who have low colonization resistance and multiply. Thus, patient's endogenous flora acquires new strains, raising the chance of infection [34]. UTIs are significantly influenced by bacterial biofilms. They develop into catheters causing their blockage and causes both acute and persistent infections [35]. Samples were gathered for this study from newly catheterized patients. A number of factors, including infection prevention measures like aseptic precautions, catheter care, and catheterization time, could explain the variation in the frequency of catheter-associated Urinary Tract infections.
Table 7 illustrates the susceptibility patterns of Enterococcus spp. that were isolated urinary tract infections in this study. The table suggests that Enterococcus was resistant to most antimicrobial agents. Notably, a high rate of antimicrobial resistance of isolated Enterococcus was observed towards ceftriaxone, cefixime, cefuroxime, and azithromycin. This high level of resistance is probably due to the widespread and injudicious use of these drugs, which are readily available over the counter in Bangladesh. Moreover, due to a lack of access to health care services, unqualified practitioners and untrained pharmacists may be administering antimicrobials extensively, contributing to this alarming situation.
Moreover, resistance to ceftriaxone was discovered to be extremely high (100%) in isolated Enterococcus species in this particular study. This outcome corresponds to those of earlier studies by Suchi et al. [23], which reported 92.86% resistance to ceftriaxone in Enterococcus. In addition, Enterococcus species exhibited a high level of resistance to cefixime, with 22 (95.7%) out of 23 demonstrating high resistance and 1 (4.3%) showing intermediate sensitivity. A previous study by Ali et al. [36] also reported that 88% of Enterococcus faecalis were immune to cefixime. Extensive usage of cefixime in hospitals in recent years may have contributed to the drug's ineffectiveness. It is worth noting that local drug prescription practices can also influence the resistance rate. Besides, this study revealed that cefuroxime was less effective against Enterococcus. Total 21 (91,3%) of 23 Enterococcus species exhibited resistance to cefuroxime, while 2 (8.7%) showed intermediate sensitivity. This result is in agreement with the study conducted in Bangladesh by Akhter et al. (2014), who reported that 80.95% of Enterococcus species were resistant to cefuroxime [17].
In our study, 82.6% of the Enterococcus species tested positive for azithromycin resistance. The findings agree with Suchi et al. (2017), who observed that 85.71% of Enterococcus species were resistant to azithromycin [23]. Besides, thirteen (81.3%) of the sixteen Enterococcus faecalis strains were resistant to azithromycin. However, in their study, Abdelkareem et al. [37] found that 57.9% of E. faecalis were resistant to azithromycin, which was lower than ours. The increased resistance could be attributed to widespread, indiscriminate use and ubiquitous availability of the drug.
Again, in this study, cotrimoxazole resistance was detected in 69.6% of Enterococcus species. This finding resembles Haque et al.’s [38] study, in which 73.91 percent of Enterococcus species resisted cotrimoxazole. Also, this study revealed that Enterococcus species showed 69.6% resistance and 13.0% intermediate sensitivity to ciprofloxacin. This result is lower than that of Haque et al. [38], who found 82.6% of Enterococcus species being resistant to ciprofloxacin.
Moreover, in this study, 13 (56.5%) Enterococcus isolates were observed to be resistant to amikacin, which is similar to the finding of Suchi et al.’s [23] study, showing a resistance rate of 66.67%. Out of total 23 urinary isolates of Enterococcus in the present study 11 (47.8%) showed resistance to gentamycin. This finding differs from that of Ahsan et al. [18] where they observed 84.78 isolates of Enterococcus showed resistance to gentamycin.
Notably, Enterococcus species exhibited low nitrofurantoin resistance in this study. Seven (30.4%) of 23 Enterococcus were resistant to nitrofurantoin, while two (8.7%) displayed intermediate sensitivity. This is marginally higher than the 21.74% resistance to nitrofurantoin found in a previous study conducted by Haque et al. [38] in Bangladesh. Due to its localized action on the urinary tract, nitrofurantoin's resistance rate remained low despite its use for many years. Therefore, nitrofurantoin can be considered a first-line, cost-effective, and efficacious oral therapy for urinary tract infections.
Our study also aimed to examine Enterococcus resistance to meropenem, an antibiotic commonly used to treat urinary tract infections. Six (26.1%) out of 23 isolates of Enterococcus showed resistance to meropenem. To the best of our knowledge, no prior study has examined the susceptibility pattern of meropenem in Enterococcus, making our study a significant contribution to the field. However, several studies have used imipenem, a drug that belongs to the same group as meropenem. Interestingly, our result aligns with a previous study conducted by Suchi et al. [23], in which 28.57% of Enterococcus species were imipenem resistant. This suggests that the resistance patterns of these two drugs may be similar, although further studies are needed to confirm this.
Been increasingly observed worldwide, with this study revealing that five (21.7%) of the 23 Enterococcus species examined were resistant to vancomycin as determined by the disc diffusion method. This result is similar to the study of Nasaj et al. [25], in which 24% of Enterococcus showed resistance to vancomycin. Furthermore, Parameswarappa et al. (2013) also reported 34%of enterococcal isolates as vancomycin-resistant, whereas Shahi et al. (2020) found that 27.7% of Enterococcus species showed resistance to vancomycin [28, 39].
Finally, linezolid has so far demonstrated good anti-enterococcal activity. However, the emergence of linezolid resistance in Enterococcus is an alarming problem for treating VRE infections. Using the disk diffusion method, five (21.7%) Enterococcus urinary isolates These findings are comparable to those of Abdelkareem et al. [37], who observed a high linezolid resistance rate of 14% and an intermediate resistance rate of 17.5%.
Conclusions
Globally, particularly in underdeveloped nations, antimicrobial resistance to bacteria that cause urinary tract infections is a serious concern. This study showed that urinary tract infections caused by Enterococcus species are widespread in our hospital, especially among older female patients. The study also revealed a significant prevalence of E. faecalis with high resistance rates to nearly every tested antibiotic, posing a considerable treatment challenge in hospital settings.
The emergence of resistance to vancomycin or linezolid highlights the necessity of considering alternative therapeutic options in such circumstances. Utilizing molecular techniques to screen for the drug-resistant gene may aid in selecting an appropriate antibiotic therapy strategy. Research identifying factors facilitating the transmission of enterococcal infection within the hospital environment and effective clinical management is urgently needed to address this alarming health problem. In addition, public health initiatives should raise awareness of the risks of improper antimicrobial usage, which will help keep dangerous illnesses at bay.
Data Availability
The datasets generated during and/or analysed during the current study are not publicly available due to these are classified data concerning patients confidential infoemations but are available from the corresponding author on reasonable request.
References
Fisher K, Phillips C (2009) The ecology, epidemiology and virulence of enterococcus. Microbiology 155:1749–1757
Arias CA, Murray BE (2012) The rise of the enterococcus: beyond vancomycin resistance. Nat Rev Microbiol 10:266–278
Sood S, Malhotra M, Das BK, Kapil A (2008) Enterococcal infections & antimicrobial resistance. Indian J Med Res 128:111–121
Weiner LM, Webb AK, Limbago B, Margaret A, Patel J, Kallen AJ et al (2016) Antimicrobial-resistant pathogens associated with healthcare- associated infections: summary of data reported to the national healthcare safety network at the centers for disease control and prevention, 2011–2014. Infect Control Hosp Epidemiol 37:1288–1301
Barros M, Martinelli R, Rocha H (2009) Enterococcal urinary tract infections in a university hospital: clinical studies. Brazilian J Infect Dis 13:294–296
Arbabi L, Boustanshenas M, Rahbar M, Majidpour A, Shayanfar N, Afshar M et al (2016) The correlation between resistance to antimicrobial agents and harboring virulence factors among enterococcus strains isolated from clinical samples. J Mol Biol Res 6:35–43
Rebelo M, Pereira B, Lima J, Decq-Mota J, Vieira JD, Costa JN (2011) Predictors of in-hospital mortality in elderly patients with bacteraemia admitted to an internal medicine ward. Int Arch Med 4:33
Khasriya R, Sathiananthamoorthy S, Ismail S, Kelsey M, Wilson M, Rohn JL et al (2013) Spectrum of bacterial colonization associated with urothelial cells from patients with chronic lower urinary tract symptoms. J Clin Microbiol 51:2054–2062
Guiton PS, Hannan TJ, Ford B, Caparon MG, Hultgren SJ (2013) Enterococcus faecalis overcomes foreign body-mediated inflammation to establish urinary tract infections. Infect Immun 81:329–339
Billington EO, Phang SH, Gregson DB, Pitout JDD, Ross T, Church DL et al (2014) Incidence, risk factors, and outcomes for Enterococcus spp. blood stream infections: a population-based study. Int J Infect Dis 26:76–82. https://doi.org/10.1016/j.ijid.2014.02.012
Kajihara T, Nakamura S, Iwanaga N, Oshima K, Takazono T, Miyazaki T et al (2015) Clinical characteristics and risk factors of enterococcal infections in Nagasaki, Japan: a retrospective study. BMC Infect Dis 15:426
Mira M-U, Deana M, Zora J, Vera G, Biljana M, Biljana R (2014) Prevalence of different enterococcal species isolated from blood and their susceptibility to antimicrobial drugs in Vojvodina, Serbia, 2011–2013. African J Microbiol Res 8:819–824
Capriotti T (2007) Resistant ‘superbugs’ create need for novel antibiotics. Dermatology Nurs 19:65
CDC (2019) Antibiotic resistance threats in the United States. Dep. Heal. AN Hum. Serv. ATLANTA:1–113. https://www.cdc.gov/drugresistance/biggest_threats.html
Tacconelli E, Carrara E, Savoldi A, Harbarth S, Mendelson M, Monnet DL et al (2018) Discovery, research, and development of new antibiotics: the WHO priority list of antibiotic-resistant bacteria and tuberculosis. Lancet Infect Dis 18:318–327
Saleh AA, Ahmed SS, Ahmed M, Sattar ANI, Miah MRA (2009) Changing trends in uropathogens and their antimicrobial sensitivity pattern. Bangladesh J Med Microbiol 3:9–12
Akhter J, Ahmed S, Anwar S (2014) Antimicrobial susceptibility patterns of enterococcus species isolated from urinary tract infections. Bangladesh J Med Microbiol 8:16–20. https://doi.org/10.3329/bjmm.v8i1.31069
Ahsan T, Hemel MMM, Shamsuzzaman SM (2020) Prevalence of high-level gentamicin resistance and distribution of its genes in enterococcus species isolated from patients of urinary tract infection in a tertiary care hospital in Bangladesh. Asian J Microbiol Biotechnol Environ Sci 22:174–180
Honarm H, Ghavidel MF, Nikokar I, Taromsari MR (2012) Evaluation of a PCR assay to detect enterococcus faecalis in blood and determine glycopeptides resistance genes: van A and van B. Iran J Med Sci 37:194–199
Kariyama R, Mitsuhata R, Chow JW, Clewell DB, Kumon H et al (2000) Simple and reliable multiplex PCR assay for surveillance isolates of vancomycin-resistant enterococci. J Clin Microbiol 38:3092–3095. https://doi.org/10.1128/jcm.38.8.3092-3095.2000
Teixeira LM, Carvalho MDGS, Facklam RR, Shewmaker PL (2015) Enterococcus. In: Jorgensen JH, Carroll KC, Funke G, Pfaller MA, Landry ML, Richter SS, Warnock DW (eds) Man Clin Microbiol, 11th edn. ASM PRESS, Washington DC, pp 403–17
CLSI. (2020). Performance standards for antimicrobial susceptibility testing. (30th edn.). CLSI supplement M100. Wayne, Pennsylvania, USA: Clinical and Laboratory Standards Institute. ISBN Number: 978–1–68440–170–3 https://www.clsi.org/
Suchi SE, Shamsuzzaman SM, Mohammad B, Uddin M, Yusuf A (2017) Detection of virulence factors and antimicrobial resistance in enterococci isolated from urinary tract infection. Bangladesh J Infect Dis 4:30–34
Raj HJ, Sarkar MD, Mondal S (2019) Prevalence of enterococcal infection and the antimicrobial susceptibility profile of the organism with special reference to vancomycin : a study in a rural medical college hospital in Eastern India. IOSR J Dent Med Sci 18:9–15. https://doi.org/10.9790/0853-180101091
Nasaj M, Mousavi SM, Hosseini SM, Arabestani MR (2016) Prevalence of virulence factors and vancomycin-resistant genes among Enterococcus faecalis and E. Faecium isolated from clinical specimens. Iran J Public Health 45:806–13
Kafil HS, Mobarez AM (2015) Assessment of biofilm formation by enterococci isolates from urinary tract infections with different virulence profiles. J King Saud Univ 27:312–317. https://doi.org/10.1016/j.jksus.2014.12.007
Islam TAB, Shamsuzzaman SM (2015) Isolation and species identification of enterococci from clinical specimen with their antimicrobial susceptibility pattern in a tertiary care hospital. Bangladesh J Coast Life Med 3:787–790
Parameswarappa J, Basavaraj V, Basavaraj C (2013) Isolation, identification, and antibiogram of enterococci isolated from patients with urinary tract infection. Ann Afr Med 12:176–181
Fourie JL, Claassen FM, Myburgh JJ (2021) Causative pathogens and antibiotic resistance in community-acquired urinary tract infections in central South Africa. South African Med J 111:124–128
Chandrasekhar D, Dollychan A, Roy BM, Cholamughath S, Parambil JC (2018) Prevalence and antibiotic utilization pattern of uropathogens causing community-acquired urinary tract infection in Kerala. India J Basic Clin Physiol Pharmaco 29:671–677
Srivastava P, Mehta R, Nirwan P, Sharma M, Dahiya SS (2013) Prevalence and antimicrobial susceptibility of enterococcus species isolated from different clinical samples in a tertiary care hospital of North India. Natl J Med Res 3:389–391
Majumder MI, Ahmed T, Sakib N, Khan A, Saha C (2018) A follow up study of bacteriology and antibiotic sensitivity pattern of urinary tract infection in a tertiary care hospital in Bangladesh. J Bacteriol Parasitol. https://doi.org/10.4172/2155-9597.1000334
Shrestha LB, Baral R, Khanal B (2019) Comparative study of antimicrobial resistance and biofilm formation among gram-positive uropathogens isolated from community-acquired urinary tract infections and catheter-associated urinary tract infections. Infect Drug Resist 12:957–963
Higuita NIA, Huycke MM (2014) Enterococcal disease, epidemiology, and implications for treatment. In: MS Gilmore, DB Clewell, Y Ike, N Shankar (eds) Enterococci: From commensals to lead causes drug resist infect. Massachusetts Eye and Ear Infirmary, Boston, pp 1–70
Soto SM (2014) Importance of biofilms in urinary tract infections: new therapeutic approaches. Adv Biol 2014:1–13
Ali A, Saleem F, Abbasi AS (2018) A pattern of antimicrobial sensitivity and resistance in large series of indoor patients at a tertiary care hospital. J Islamabad Med Dental College 7:59–66
Abdelkareem MZ, Sayed M, Hassuna NA, Mahmoud MS, Abdelwahab SF (2016) Multi-drug-resistant Enterococcus faecalis among Egyptian patients with urinary tract infection. J Chemother 29:74–82
Haque R, Akter ML, Salam MA (2015) Prevalence and susceptibility of uropathogens: a recent report from a teaching hospital in Bangladesh. BMC Res Notes 8:416
Shahi F, Hamidi H, Khoshnood S, Mehdipour G, Dezfouli A, Sheikh A (2020) Virulence determinants and biofilm formation in clinical isolates of Enterococcus: a cross-sectional study. J Acute Dis 9:27
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All authors contributed to the study conception and design. Material preparation, data collection, methodology and analysis were performed by [Nahla Islam Neeva]. The manuscript was written by [Nahla Islam Neeva] [Nahida Zafrin] and review and editing by [Nahida Zafrin]. Supervised by [Nahida Zafrin] [Azima Aktar Jhuma]. All authors read and approved the final manuscript.
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Neeva, N.I., Zafrin, N., Jhuma, A.A. et al. Antimicrobial Susceptibility Patterns of Enterococcus Species and Molecular Detection of Enterococcus faecalis Isolated from Patients with Urinary Tract Infection in a Tertiary Care Hospital in Bangladesh. Indian J Microbiol 64, 1025–1034 (2024). https://doi.org/10.1007/s12088-024-01216-7
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DOI: https://doi.org/10.1007/s12088-024-01216-7