Abstract
Plants are continuously exposed to temperature changes and biotic/abiotic stresses. Current global warming dynamics cause extreme temperature fluctuations that severely affect crop productivity. Orchardgrass (Dactylis glomerata L.) is one of the most important perennial grasses adapted for cool temperatures. Orchardgrass displays rapid establishment, vigorous growth, and rapid recovery after cutting or grazing, but it is sensitive to heat stress. In this study, we isolated 23 heat shock-inducible partial gene fragments from orchardgrass using a differential-display RT-PCR and a reverse northern blotting. Those full-length cDNAs encode major molecular chaperones (Hsp90s, Hsp70, and small Hsp) and Hsp90 co-chaperones (Hop, p23, and Aha) were identified from a heat-treated orchardgrass cDNA library and analyzed those expressions by northern blot analysis. In addition, we further characterized Hop, which plays as an important adapter that organizes the Hsp90 and Hsp70 complex in the Hsp90-associated heteromultimeric chaperone complex. Orchardgrass Hop (DgHop) transcript levels were enhanced by heat shock stress and dramatically reduced by cold, salt, or dehydration stress. DgHop contains three conserved tetratricopeptide repeat domains, which are involved in interactions with major Hsps. Yeast two-hybrid and pull-down analysis indicated that the major DgHop client proteins were Hsp90 and Hsp70, and DgHop directly interacted with DgHsp90 and DgHsp70. Our data provide new genetic information on heat shock responses in orchardgrass. We suggest that this information contribute to generating heat shock-tolerant forage crops.
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Introduction
Global warming and climate change is now recognized as a serious problem with the potential to threaten all living organisms on the Earth. The Intergovernmental Panel on Climate Change (IPCC; http://www.ipcc.ch) reports that global surface temperature increased 0.74 ± 0.18 °C (1.33 ± 0.32 °F) during the past 100 years. The IPCC report concludes that temperature increase since the mid-twentieth century is due to the increase in anthropogenic greenhouse gas emissions. The increased global temperature causes abiotic stresses in plants, such as heat, drought, and salinity stresses that have reduced the productivity for most of the major crops by more than 50% (Bray et al. 2000).
Orchardgrass (Dactylis glomerata L.) is one of the most widely cultivated, cool season perennial forage grasses in the world. It starts to grow in early spring, develops rapidly, has high productivity, and regenerates rapidly after cutting and grazing (Van Santen and Sleper 1996). Climate change due to global warming will affect winter survival and exacerbate summer depression of perennial forage crops. Bélanger et al. (2002) studied forage crop performance using predicted future climate models based on warming, and concluded that winter injury risks to perennial crops in eastern Canada will likely increase due to reductions in cold hardening and protective snow cover during cold periods, which will expose plants to killing frosts, soil heaving, and ice encasement. Winter hardening of perennial crops is closely related to summer depression (Van Santen and Sleper 1996). Most perennial forage crops such as orchardgrass are well adapted to cool seasons, with optimum growth at approximately 21 °C. These forage crops are susceptible to heat stress, and plant survival and productivity dramatically declines during warm seasons (Seo et al. 1988).
Heat stress can denature proteins and disrupt cellular function and/or structure. Heat stress also elicits cell signaling pathways and cellular responses that protect against heat-induced damage, including biosynthesis of heat shock proteins (Hsps), upregulation of antioxidant pathways, and activation of kinases and transcription factors. These signaling pathways and cellular responses have been identified using proteomic analysis, DNA microarrays, and subtractive hybridization (Wang et al. 2003; Qureshi et al. 2007; Tian et al. 2008). Hsps are a unique set of proteins that accumulate to high levels in response to sudden temperature increases (Vierling 1991). Most Hsps function as molecular chaperones. They bind to unfolded or denatured proteins, prevent aggregation, induce correct refolding, and facilitate proper cell function under high-temperature conditions (Wang et al. 2004). Five major Hsp families are classified according to their molecular masses: Hsp100/ClpB (eukaryotic/E. coli nomenclature), Hsp90/HtpG, Hsp70/DnaK, Hsp60/GroEL, and small Hsps (Wang et al. 2004). Hsp101, Hsp70, and small Hsps were verified to confer thermotolerance in several plants (Hong and Vierling 2001; Queitsch et al. 2000; Cho and Choi 2009; Kim et al. 2012).
Many Hsp genes play in abiotic stress tolerance and those roles in response of abiotic stresses have been identified in model plants and important crop species; however, Hsp genes and those roles of perennial forage crops have not been extensively identified and characterized. The orchardgrass genome has not been completely mapped and sequenced, and very little genomic information is available. In this study, we identified 23 highly expressed genes at the transcriptional level using mRNA differential display to screen heat shock-inducible genes in orchardgrass. We further characterized a gene-encoding Hsp-organizing protein (Hop), which is an important co-chaperone that assembles the heteromultimeric Hsp complex (Pratt and Toft 2003). In addition, we confirmed its partner proteins, DgHsp90 and DgHsp70 in orchardgrass using yeast two-hybrid analysis and pull-down assay.
Materials and methods
Plant material and stress treatments
Orchardgrass (Dactylis glomerata L. cv. Potomac) seeds were purchased from Snow Brand Seed Co., Ltd. (Sapporo, Japan). The seedlings were grown in 250 cm3 Erlenmeyer flasks containing 100 cm3 of liquid B5 medium in a growth chamber at 25 °C with 16 h light/8 h dark cycles and constant shaking (3.2g-force). Two-week-old seedlings were exposed to a range of temperatures (25, 30, 35, 40, 45, or 50 °C) in a water bath for 1 h, and then harvested for RNA extraction. To examine the time-dependent effects of heat shock stress, seedlings were exposed to 40 °C for the indicated time intervals. Seedlings also were exposed to cold (4 °C), salt (140 mM NaCl), and dehydration stress (air-dried on filter paper).
Measurement of ion leakage and total chlorophyll content
Electrolyte leakage was measured in aerial tissues of 2-week-old seedlings, which were floated on 10 cm3 of deionized water and exposed to various temperatures (25−50 °C with 5 °C intervals) for 1 h in a water bath. Electrolyte leakage also was measured at room temperature after 2 h of shaking (3.2g-force) using a conductometer (Thermo Scientific). Total electrolyte leakage from aerial tissues was measured after autoclaving (105 °C for 15 min) and subsequent shaking (3.2g-force) for 16 h. Chlorophyll content was measured using aerial tissues of 2-week-old seedlings that were floated in 10 cm3 of deionized water and exposed to various temperatures and times as described for electrolyte leakage experiments. Then, the treated tissues were soaked in 80% (v/v) acetone, and total chlorophyll content was measured using spectrophotometry as described previously (Ni et al. 2009). Data represent mean ± SE with three biological repeats.
Differential display RT-PCR
Differential display RT-PCR (DD-RT-PCR) analysis was performed using the mRNA differential display system according to the manufacturer’s instructions (RNAimage, GenHunter). Total RNA was extracted from each orchardgrass seedling sample and subsequently treated with DNase I. DNase-free RNA was converted into first-strand cDNA using three different one-base-anchored H-T11M primers (where M may be G, A, or C) and reverse transcriptase. The RT-PCR products were subjected to secondary PCR using the same H-T11M primers and an arbitrary 13-base oligonucleotide with 185 kBq of α-[35S]dATP. The secondary PCR products were separated on a 6% urea-denaturing sequence gel. The gel was dried under vacuum on a gel dryer at 80 °C for 1 h and visualized on X-ray film. The dried gel corresponding to differentially expressed bands was cut and soaked in 10 mm2 of distilled water. DNA fragments were eluted from the gel by boiling and then precipitated with 3 M sodium acetate (pH 5.2), glycogen (10 mg cm−3), and 100% absolute ethanol. The DNA was re-amplified with the same set of primers and prepared for subsequent reverse northern blot analysis.
Reverse northern blot analysis
Reverse northern blot analysis was applied to isolate strong candidates (and also for reducing false clones) that are highly expressed by heat shock treatment from large sets of DNA fragments achieved by DD-RT-PCR. The re-amplified DNA fragments were immobilized by spotting of DNA fragment onto a nylon membrane using the 96-well Bio-Dot Microfiltration Apparatus (Bio-Rad). Total RNA (20 µg) from orchardgrass seedling samples as a probe was labeled with 185 kBq of α-[32P]dATP, H-T11M primers, and reverse transcriptase, and subjected to the following PCR protocol: 65 °C for 5 min, 37 °C for 10 min after addition of reverse transcriptase, 37 °C for 60 min, and 75 °C for 5 min. Blots were hybridized in Denhardt’s solution with SSC buffer overnight at 65 °C with radiolabeled PCR product. After hybridization, blots were washed twice with 2 × SSC containing 1% SDS for 15 min at room temperature, and twice with 0.1 × SSC containing 0.5% SDS for 10 min at 65 °C. Blots were exposed to X-ray film to visualize hybridization.
Orchardgrass cDNA library construction and full-length cDNA screening
Two-week-old orchardgrass seedlings were heat-treated at 35 °C for 1 h. Then, poly(A)+ RNA from heat-treated seedlings was used to construct the orchardgrass λZAP II cDNA library (Stratagene). Full-length cDNAs of the orchardgrass cDNA library were screened using 32P-labeled DNA fragments.
DNA sequencing
The selected cDNA clones were sequenced using an ABI PRISM BigDye Terminator Cycle Sequencing Ready Reaction Kit (Perkin–Elmer) and ABI 310 Sequencer (Perkin–Elmer).
Northern blot analysis
Total RNA from orchardgrass seedling samples was extracted using the phenol/LiCl method. Total RNA (20 µg) was fractionated on a 1.2% formaldehyde agarose gel and blotted onto Hybond-N+ nylon membrane (Amersham) using 10 × SSC. Blots were hybridized overnight at 65 °C with a 32P-labeled full-length DNA using the Megaprime DNA Labeling System (Amersham). Northern hybridization was performed using the same method described for reverse northern blot analysis. Blots were exposed and visualized using a Fuji BAS-2500 Bio-Imaging Analyzer (Fuji Photo Film). Three independent northern blot analyses were performed and the bands were quantified using ImageJ (v. 1.48).
Amino acid sequence alignment and phylogenetic analysis
The deduced amino acid sequence was aligned with homologous amino acid sequences of several species using the multiple alignment tools of ClustalX and GeneDoc. All homologous sequences were retrieved from GenBank by performing a BLAST homology search. A phylogenetic tree was constructed using NCBI-BLAST Tree View using BLAST pairwise alignment with neighbor-joining method.
Expression and purification of recombinant DgHop protein
The DgHop open reading frame (ORF) was cloned into pET28a to produce recombinant His-tagged DgHop and DgHsp90 (as a positive control for chaperone assay; Cha et al. 2009b). The plasmid was transformed into Escherichia coli BL21 (DE3) for protein expression. E. coli cells were grown at 30 °C until the OD600 approached 0.8. Protein expression was induced by adding 0.5 mM isopropyl-1-thio-β-d-galactopyranoside (IPTG) for 3 h, and cells were harvested by centrifugation. Harvested cells were resuspended in phosphate-buffered saline (PBS), disrupted by sonication, and centrifuged. The supernatant was recovered and applied onto a nickel–nitrilotriacetic acid (Ni–NTA) affinity resin column. The column was washed with 50 mM imidazole and His-tagged DgHop was eluted with 200 mM imidazole. His-tagged DgHop was dialyzed against 40 mM HEPES (pH 7.5).
Holdase chaperone assay
The purified His-DgHop was subjected to a holdase chaperone assay as described previously (Cha et al. 2009a). Holdase chaperone activity was evaluated by measuring its capacity to suppress thermal aggregation at 45 °C of Arabidopsis thaliana malate dehydrogenase (MDH, EC 1.1.1.37). Activity was measured by light scattering at Abs340 using a Beckman DU-800 spectrophotometer attached to a thermostatic cell holder assembly.
Yeast two-hybrid analysis
The DgHop ORF was cloned into the pBDGAL4Cam vector containing the GAL4 DNA-binding domain (BD). An orchardgrass cDNA library was constructed in the pADGAL4 vector containing the GAL4 activation domain (AD) and transformed into the yeast reporter strain pJ694A (MATa trp1-90 leu2-3, 112 ura3-52 his3-200 gal4 Δgal80 ΔLYS2::GAL1-HIS3 GAL2-ADE2 met2::GAL7-lacZ) harboring pBDGAL4Cam-DgHop. Interactions between the encoded fusion proteins were investigated by co-transforming appropriate plasmids into the yeast strain pJ694A. Transformed yeast cells carrying both plasmids were selected by plating on SD agar medium (0.67% nitrogen base without amino acids and nucleotide bases) lacking tryptophan, leucine, and histidine, and grown at 30 °C for 4 days. Histidine-positive colonies were further tested for β-galactosidase (lacZ) activation, according to the manufacturer’s protocol (Stratagene). Positive interacting proteins were isolated from yeast cells and analyzed by sequencing. To identify protein–protein interactions between DgHop and either DgHsp90 or DgHsp70, the latter two genes were cloned into the pBDGAL4Cam and the pADGAL4 vector, respectively. The bait and prey plasmids were transformed into a pJ694A yeast strain according to the manufacturer’s instructions. Yeast transformants were selected and confirmed using the same steps as described previously in this section. Yeast cells harboring pBD-wt::pAD-wt and pLaminC::pAD-wt constructs were used as positive and negative controls, respectively.
In vitro pull-down assay
Glutathione-S transferase (GST), GST-DgHsp70, or GST-DgHsp90-6xHis were expressed in E. coli BL21 (Rosetta) as described previously (Cha et al. 2009b, 2012). Cells were lysed in buffer (1X PBS, pH 7.4, 1% Triton X-100, 0.1% 2-mercaptoethanol, 1 mg cm−3 lysozyme and 1 mM phenylmethylsulfonyl fluoride) with a sonicator. GST, GST-DgHsp70, GST-DgHsp90-6xHis supernatants were incubated with 30 mm3 of pre-equilibrated Glutathione Sepharose 4B (Bioprogen) for 2 h at 4 °C with rotation. Agarose beads were precipitated by centrifugation and then washed with buffer (1× PBS, pH 7.4 and 0.1% 2-mercaptoethanol, 1 mM phenylmethylsulfonyl fluoride) for 5 min at 4 °C with rotation, three times. GST or GST-DgHsp70, GST-DgHsp90-6xHis bound beads were incubated with soluble E. coli lysates containing 6xHis-DgHop for 2 h at 4 °C with rotation. The beads were washed with buffer (1x PBS, pH 7.4 and 0.1% 2-mercaptoethanol, 1 mM phenylmethylsulfonyl fluoride) five times. Protein bound to the beads was separated by SDS-PAGE and analyzed by immunoblot analysis. Anti-GST and anti-His sera were used to detect GST, GST-DgHsp70, GST-DgHsp90-6xHis and 6xHis-DgHop and GST-DgHsp90-6xHis.
Statistical analysis
Statistical significances were calculated by Student’s t test using Microsoft Excel software.
Results
Analysis of physiological responses by heat stress in orchardgrass
Plant exposure to stress conditions elicits physiological responses. This study investigated common stress-responsive parameters such as ion leakage and chlorophyll content in orchardgrass seedlings subjected to 25−50 °C (Fig. 1). Ion leakage from aerial tissues gradually increased with increasingly higher temperatures, whereas chlorophyll content declined with temperature increases. It indicates that heat shock stress causes physiological damage in orchardgrass and may reduce productivity.
Isolation and identification of heat shock-inducible genes
To isolate genes induced by heat shock, 2-week-old orchardgrass seedlings were subjected to temperatures of 25–50 °C (with 5 °C increments) for 1 h. Samples were analyzed using DD-RT-PCR, and bands from control and heat-treated seedlings were compared by analyzing sequencing gel autoradiograms. A total of 96 differentially expressed cDNA bands were excised from the dried gel and amplified by PCR using subjected arbitrary primers. These cDNA fragments were further evaluated by reverse northern blot analysis which is easy means of defining expression of large sets of genes/DNA fragments to eliminate false-positive clones. For reverse northern blot analysis, large sets of DNA fragments achieved from DD-RT-PCR were immobilized on a membrane, and then hybridized with radiolabeled RNA (as a probe) which is extracted from heat shock-treated orchardgrass seedlings (Fig. S1). The signal intensities of most PCR products increased in seedlings subjected to 35 and 40 °C compared to that at 25 °C and its transcript expression at 35 °C compared to those at 25 °C is shown and 23 cDNA fragments with > twofold increase in relative transcription levels were selected for further characterization (Fig. S2).
The 23 cDNA fragments were identified by sequencing and are listed in Table 1. These cDNA fragments had high-sequence similarity with known to heat shock protein (Hsp) genes: four Hsp101 genes, three Hsp90s genes, one Hsp70 gene, and two small Hsps genes. Five cDNA fragments had high sequence homology with co-chaperone genes: three Stress-induced protein (Sti)/Hsp-organizing protein (Hop) genes, one Activator of Hsp90 ATPase (Aha) gene, and one p23 gene. To isolate full-length cDNA clones, we generated an orchardgrass cDNA library and used each fragment to screen for full-length clones. Eight full-length clones were successfully isolated and entire sequences were deposited into the GenBank database with their accession numbers (Table 1). DgHsp90 (EU030446) shows high sequence similarity with barley Glucose-regulated protein 94 (GRP94), which indicates an orchardgrass Hsp90 localized to the endoplasmic reticulum (Cha et al. 2009b). DgHsp90.1 (FJ968744) and DgHsp90.2 (FJ968745) share 93% sequence identity with genes encoding barley and wheat cytosolic Hsp90, respectively. DgHsp70 (EU541356) is identified as a cytosolic Hsp70. DgHsp17.2 (DQ172835) shows high-sequence similarity with wheat cytosolic class II small Hsp 17.2 (Cha et al. 2016). Three orchardgrass genes encoding Hsp90 co-chaperones were screened as full-length cDNAs. DgHop (FJ968747), DgAha (FJ968746), and Dgp23 (DQ172836, Cha et al. 2009a) were identified as homologs of corn (Zea mays) Hop, Aha, and p23, respectively. To examine heat shock-induced transcription profiles, we performed northern blot analysis with full-length cDNA clones as probes and calculated the expression in terms of fold induction. All identified genes were strongly induced by heat shock (Table 1). This result is supported by previous reports that transcripts of DgHsp90, DgHsp70, and Dgp23 were strongly enhanced by heat stress (Cha et al. 2009a, b, 2012). These genes were the most strongly induced by 35 °C, and then declined with increasing temperatures to 50 °C. Inductions of DgHop transcript levels were more strongly induced than those of major Hsp genes such as DgHsp90.1 and DgHsp90.2 (Fig. 2). These data suggest that heat shock stress primarily induces genes encoding Hsps and co-chaperones, and the heteromultimeric protein complex associated with Hsps and co-chaperones might be activated to repair client proteins damaged by heat shock in orchardgrass.
Identification of orchardgrass Hop gene
Hop protein plays an important role for assembling Hsp90 and Hsp70 in the heteromultimeric chaperone complex, and is essential for steroid receptor assembly in mammals (Pratt and Toft 2003). First, we analyzed sequence prior to evaluating whether orchardgrass Hop (DgHop) could recruit orchardgrass Hsps to associate with the multimeric chaperone complex. Full-length DgHop cDNA screened from the cDNA library has a length of 1937 bp and contains a 1737 bp ORF encoding 578 amino acids (Table 1, Fig. S3). The cDNA contains a 5′ untranslated region (5′-UTR) of 42 bp and a 3′-UTR of 161 bp, which includes a stop codon (TAA) and poly(A) tail (Fig. S3). PROSITE and NCBI-BLAST analysis indicates that DgHop consists of a degenerate sequence of 34 amino acids forming nine conserved putative tetratricopeptide repeat (TPR) motifs (Fig. 3a). There are three tandem-TPR motifs organizing each TPR domain at amino acid positions 2–103, 251–361, and 390–489, which has important roles in protein–protein interactions (Blatch and Lässle 1999). DgHop also contains the STI1 domain, which is known to be a heat shock chaperonin-binding motif at amino acids 527–566. Sequence alignment of DgHop with other Hop homologs (soybean, Arabidopsis, rice, corn, and human) shows high conservation of TPR and STI1 domains (Fig. 3a). Protein subcellular localization prediction system (LocTree3, http://rostlab.org/services/loctree2/) predicts that DgHop localizes in the nucleus with a conserved nuclear localization signal (NLS) at amino acids 246–264 (based on DgHop sequence) which is also conserved in soybean Hop (Zhang et al. 2003). DgHop has higher sequence identity with Hop proteins in monocots (over 82% sequence identity) than with those in dicots (71–74% identity) (Fig. 3b). However, it does still remain elusive how nuclear Hop protein interacts with different subcellular localized Hsp90 and Hsp70.
We performed northern blot analyses to examine DgHop transcription levels in orchardgrass seedlings subjected to various abiotic stresses. DgHop transcripts were expressed at basal levels until 30 min after exposure to heat shock stress at 40 °C, but these levels were dramatically enhanced at 1 and 2 h since heat treatment, and then declined to basal levels after subsequent exposure to 25 °C for 5 h as a recovery (Fig. 4). Seedlings also were exposed to cold (4 °C), salt (140 mM NaCl), or dehydration (air-dried on filter paper) stress for 0, 1, 6, and 12 h (Fig. 5). DgHop transcripts were slightly induced in response to cold stress. In contrast, DgHop transcripts were dramatically reduced in response to salt and dehydration stress (Fig. 5). These results indicate that DgHop expression was induced primarily by extreme temperature stress. We measured the chaperone activity of recombinant DgHop in vitro using the model substrate malate dehydrogenase (MDH). MDH was fully denatured under heat denaturing conditions at 45 °C and DgHop did not effectively suppress MDH aggregation (Fig. S4). Neither in 1:1 or 1:10 molar ratio of MDH to DgHop could protect heat-induced aggregation of MDH, while almost 90% of MDH aggregation was suppressed by DgHsp90 in a 1:1 molar ratio of MDH to DgHsp90 (Fig. S4). It suggests that DgHop functions as an adaptor protein to assemble the chaperone complex, rather than acting as a chaperone protein.
Identification of Hop-interacting proteins
TPR motif-containing proteins including Hop/Sti, Hip, Cyp40, FKBP, CDC, and PP5 have been identified in organisms ranging from bacteria to humans (Blatch and Lässle 1999). Hop participates in Hsp90 heterocomplex assembly through TPR motifs by recruiting Hsp90 to preexisting Hsp70–client complexes (Chen and Smith 1998; Smith 2004). However, plant Hop and Hop-interacting proteins are still largely unknown. To screen DgHop client proteins, we performed a yeast two-hybrid analysis with an orchardgrass cDNA library in the pADGAL4 vector. After excluding the false clones, we identified 15 proteins as DgHop-interacting proteins. Hsp90 proteins had the strongest reproducible interactions with DgHop (Table S1). Hsp70 and class I small Hsp also were identified as DgHop-interacting proteins. Cinnamyl-alcohol dehydrogenase, 3-deoxy-d-arabino-heptulosonate-7-phosphate synthase (DAHPS), glycine decarboxylase subunit, adenosine kinase, and the 10 kDa polypeptide of PSII also were screened as interacting proteins. These results suggest that DgHop may function as an organizing protein that interacts with Hsp90 and Hsp70 in orchardgrass.
Furthermore, we examined direct interactions between DgHop and DgHsp90 or DgHsp70. The yeast two-hybrid proteins were constructed as follows: DgHsp90 or DgHsp70 ORFs were inserted into the activation domain (AD) vector to generate prey fusion proteins, and the DgHop ORF was inserted into the binding domain (BD) vector to generate a bait protein. Both DgHsp90 and DgHsp70 strongly interacted with DgHop (Fig. 6a). To further confirm and independently examine the physical interaction, we used GST pull-down assays. Recombinant GST as a negative control, GST-DgHsp70 and GST-DgHsp90-6xHis were expressed in E. coli and then purified by affinity chromatography using glutathione agarose beads. 6xHis-DgHop was also expressed in E. coli and then the soluble protein extracts were incubated with the glutathione agarose beads immobilized GST, GST-DgHsp70 or GST-DgHsp90-6xHis. 6xHis-DgHop was co-purified with GST-DgHsp70 or GST-DgHsp90-6xHis, but not with GST alone (Fig. 6b). This result provides an additional evidence that DgHop interacts with DgHsp70 or DgHsp90 physically. Therefore, DgHop has a similar function to that of mammalian Hop proteins and acts as an adaptor protein that assembles the Hsp90 heterocomplex.
Discussion
To cope with heat stress, plants activate a large set of specific genes that results in the accumulation of specific heat stress-associated proteins, which is the heat shock response (HSR) (Vierling 1991). HSR is regulated at the transcriptional level by heat shock transcription factors (HSFs). HSFs subsequently induce expression of Hsp genes by binding to heat shock elements (HSEs) (Schöffl et al. 1998). Hsps prevent protein aggregation, and promote proper folding of unfolded proteins and confer enhanced thermotolerance in plants (Vierling 1991). Although most of these proteins are expressed in response to heat stress, expression of their mRNA transcripts has not been fully elucidated. Microarray analysis revealed that most of heat-induced transcripts as well as Hsp coding genes in heat-exposed Arabidopsis suspension cells showed a peak at 1 h after heat treatment, and then gradually declined that is consistent with our results (Fig. 2; Lim et al. 2006). Prolonged heat stress and lethal temperature decrease transcription of heat-shock (HS) related genes, accumulate unfolded proteins in cell, and consequently result plant death, but short-term exposure to sub-lethal temperature (such as heat-acclimation) increases thermotolerance through prolonged transcription of HS genes (Schöffl et al. 1998; Amano et al. 2012). Thus, exposure of heat stresses over 45 °C for 1 h could be lethal to orchardgrass and Arabidopsis caused by reducing transcription of HS genes (Fig. 2; Lim et al. 2006). In addition, several plant Hsp90 co-chaperones, including soybean Hop and bentgrass p23, were reported that those transcription is enhanced by heat stress (Zhang et al. 2003; Tian et al. 2008). However, a comprehensive molecular approach to isolate heat-responsive genes is still restricted in model plants such as Arabidopsis (Lim et al. 2006).
In this study, heat-inducible genes were isolated and identified from orchardgrass, one of the most important pasture crops in the world, using mRNA differential display and cDNA library screening. Table 1 shows full-length genes encoding Hsp family member (Hsp90s, Hsp70, and small Hsps) and Hsp90 co-chaperones (Hop, Aha, and p23) with enhanced transcripts in heat-stressed orchardgrass seedlings (Fig. 2).
The Hsp90 heterocomplex plays as an important role for regulating several cellular responses (Pratt and Toft 2003). A minimal Hsp90 heterocomplex containing Hsp90, Hsp70, Hop, Hsp40, and p23 has been demonstrated in animals based on the presence of a hormone receptor. In the molecular leves, Hop/Sti1 enables to form Hsp90 heterocomplexes with Hsp90 and Hsp70 for recognition of the client proteins of Hsp90 (Pratt and Toft 2003; Fellerer et al. 2011). Co-chaperones such as Hop, Hsp40, and p23 enhance the efficiency of Hsp90 heterocomplex assembly (Dittmar et al. 1997). However, all components in this complex have not been fully identified in plants. Recently, although biological function of Hop/Sti1 is still elucidative, Hop is involved in a trafficking system of rice chitin receptor OsCERK1 and contributes to OsRac1 immune complex (Chen et al. 2010). Interestingly, the plant Hsp90 heterocomplex has been detected using a rabbit reticulocyte folding system and wheat germ extracts. Plant Hsp90 and Hsp70 cross-react not only with plant co-chaperones but also with animals’ to form a heterocomplex assembly (Hutchison et al. 1995; Stancato et al. 1996; Dittmar et al. 1997; Zhang et al. 2003). Thus, it is believed that the Hsp90/Hsp70 heterocomplex machinery in plants may be functionally identical to that in animals. Hsp90 function also is coupled to ATP binding and hydrolysis through association with ATPase-regulating stimulator and suppressor co-chaperones Aha and Hop, respectively (Scheibel et al. 1998; Caplan et al. 2003). Although E. coli contains a single Hsp90 homolog (HtpG), eukaryotic Hsp90 proteins are distributed in distinct organelles, including the cytoplasm, chloroplast, mitochondria, and endoplasmic reticulum (ER) (Krishna and Gloor 2001).
In orchardgrass seedlings, we identified three heat-inducible DgHsp90 genes, one ER-localized DgHsp90, and two cytosolic Hsp90s (DgHsp90.1 and DgHsp90.2) (Table 1). We previously reported that transcriptional expression of DgHsp90 was enhanced by heat and oxidative stresses, and was reduced by cold and dehydration (Cha et al. 2009b). DgHsp90 also displayed strong ATP-dependent chaperone activity, and overexpression in yeast cells conferred thermotolerance. However, two cytosolic DgHsp90.1 and DgHsp90.2 have not yet been identified. Another major chaperone protein Hsp70 is also abundant and localizes to several subcellular regions. Cytosolic DgHsp70 was reported to have ATP-dependent chaperone activity and confer thermotolerance (Cha et al. 2012). We also characterized the orchardgrass Hsp90 co-chaperone protein Dgp23 previously (Cha et al. 2009a). Dgp23 was the first identified p23 homolog in plants; it exhibited chaperone activity and interacted with DgHsp90. Although p23 can bind directly to Hsp90 in the absence of substrate, it cannot bind to Hsp90 in the absence of ATP (Sullivan et al. 2002). And, p23 stabilizes Hsp90 conformation by inhibiting ATP hydrolysis (McLaughlin et al. 2006).
Hsp70 function is coupled to an ATP hydrolysis cycle by associating with various proteins, which commonly possess TPR motif-containing co-chaperones such as Hip, Hop, and CHIP. These co-chaperones interact with both Hsp90 and Hsp70 through TPR motifs. The TPR motif is a degenerate 34 amino acid repeat that is often arranged in tandem arrays, although it is not unusual to find one or more repeats separated from such an array (Blatch and Lässle 1999). The binding of co-chaperones at TPR motifs differentially regulates Hsp90 and Hsp70 functional activity, translocation, and subcellular localization (Chen and Smith 1998; Pratt et al. 1999; Prodromou and Pearl 2003). Human Hop and its TPR domains function as an adaptor protein to assemble Hsp90 and Hsp70, and disrupt mature receptor complex assembly (Chen and Smith 1998). The transcription levels of mouse and soybean Hop transcription levels increased by heat stress (Lässle et al. 1997; Zhang et al. 2003). Hop homologs are defined by presenting of nine TPR motifs clustered into domains (Fig. 3). The Hsp90–Hop–Hsp70 complex is formed via Hop TPR2a and TPR1 binding each C terminus of Hsp90 and Hsp70, respectively (Carrigan et al. 2004). The Hsp90 central domain is also necessary to interact with Hop (Onuoha et al. 2008).
We also identified that DgHop transcript levels are dramatically induced by heat stress and are reduced by cold, salt, and dehydration stress (Figs. 2c, 4, 5). The results demonstrate that DgHop acts positively during heat-specific stress to modulate heteromultimeric complex assembly with Hsp90 and Hsp70. However, DgHop could not play as a chaperone protein itself, suggesting that DgHop may be important to organize mature form of Hsp90 heteromultimeric complex. We confirmed that Hsp90 and Hsp70 are major interacting partner proteins of DgHop in orchardgrass through yeast two-hybrid and pull-down assay (Table S1, Fig. 6). Interestingly, several novel DgHop-interacting proteins, such as cinnamyl-alcohol dehydrogenase, 3-deoxy-d-arabino-heptulosonate-7-phosphate synthase, glycine decarboxylase subunit, adenosine kinase, and the 10 kDa polypeptide of PSII, are identified in this study (Table S1). Loss of function of Medicago truncatula cinnamyl-alcohol dehydrogenase 1 which is involved in the last step of monolignol biosynthesis displays temperature-sensitive growth defects (Zhao et al. 2013). DAHPS catalyzes the first step in the shikimate pathway triggering a synthesis of diverse aromatic compounds (Derrer et al. 2013). Proteomic analysis revealed that heat stress causes wide range of proteomic changes, especially in photosynthesis, carbon metabolism and signaling identified in leaves (Wang et al. 2017). Glycine decarboxylase subunit and component of PSII are involved in photorespiration and photoreaction, respectively. Gene-encoding adenosine kinase 1 in mustard hill coral is decreased by heat stress (Kenkel et al. 2013). Based on the characteristic of these DgHop interactors, it could be possible to be responsive or client proteins of Hsp90 heteromultimeric complex. Thus, DgHop may plays as a role not only in organizing protein for Hsp90–Hsp70 association, but also in bridging between Hsp90–Hop–Hsp70 complex and clients. However, it still remains elusive.
In conclusion, we screened 23 unique fragments of heat shock-inducible genes in orchardgrass seedlings using DD-RT-PCR. Eight full-length genes were isolated from the orchardgrass cDNA library, which encoding major molecular chaperones (Hsp90, Hsp70, and small Hsp) and Hsp90 co-chaperones (Hop, Aha, and p23). The expression of these genes was induced during heat stress and this result supports DD-RT-PCR screening. We isolated and characterized the first monocot Hop gene (DgHop) in orchardgrass, and showed that DgHop expression is enhanced by heat shock but not by other abiotic stresses such as cold, salt, and dehydration. Yeast two-hybrid analysis and in vitro pull-down assay using DgHop indicated that DgHop primarily functions as an adaptor protein involved in the formation of the Hsp90–Hop–Hsp70 chaperone complex. Our data provide new approaches to utilize Hsp genes to enhance thermotolerance in heat-sensitive crops.
Author contribution statement
JYC and DS initiated the project, and JYC, DB, MSC and SH performed the experiments. JYC, SHL and DS analyzed the data, and JYC and DS wrote the paper. All authors discussed the results and approved the manuscript.
References
Amano M, Lida S, Kosuge K (2012) Comparative studies of thermotolerance: different modes of heat acclimation between tolerant and intolerant aquatic plants of the genus Potamogeton. Ann Bot 109(2):443–452
Bélanger G, Rochette P, Castonguay Y, Bootsma A, Mongrain D, Ryan DAJ (2002) Climate change and winter survival of perennial forage crops in Eastern Canada. Agron J 94:1120–1130
Blatch GL, Lässle M (1999) The tetratricopeptide repeat: a structural motif mediating protein–protein interactions. BioEssays 21:932–939
Bray EA, Bailey-Serres J, Weretilnyk E (2000) Responses to abiotic stresses. In: Gruissem W, Buchannan B, Jones R (eds) Biochemical and molecular biology of plants. American Society of Plant Physiologists, Rockville, pp 1158–1249
Caplan AJ, Jackson S, Smith D (2003) Hsp90 reaches new heights. EMBO Rep 4(2):126–130
Carrigan PE, Nelson GM, Roberts PJ, Stoffer J, Riggs DL, Smith DF (2004) Multiple domains of the co-chaperone Hop are important for Hsp70 binding. J Biol Chem 279:16185–16193
Cha JY, Ermawati N, Jung MH, Su’udi M, Kim KY, Kim JY, Han CD, Lee KH, Son D (2009a) Characterization of orchardgrass p23, a flowering plant Hsp90 cohort protein. Cell Stress Chaperones 14:233–243
Cha JY, Jung MH, Ermawati N, Su’udi M, Rho GJ, Han CD, Lee KH, Son D (2009b) Functional characterization of orchardgrass endoplasmic reticulum-resident Hsp90 (DgHsp90) as a chaperone and an ATPase. Plant Physiol Biochem 47:859–866
Cha JY, Suu’di M, Kim WY, Kim DR, Kwak YS, Son D (2012) Functional characterization of orchardgrass cytosolic Hsp70 (DgHsp70) and the negative regulation by Ca2+/AtCaM2 binding. Plant Physiol Biochem 58:29–36
Cha JY, Lee SH, Seo KH, Choi JY, Cheong MS, Son D (2016) N-terminal arm of orchardgrass Hsp17.2 (DgHsp17.2) is essential for both in vitro chaperone activity and in vivo thermotolerance in yeast. Arch Biochem Biophys 591:18–27
Chen S, Smith DF (1998) Hop as an adaptor in the heat shock protein 70 (Hsp70) and Hsp90 chaperone machinery. J Biol Chem 273:35194–35200
Chen L, Hamada S, Fujiwara M, Zhu T, Thao NP, Wong HL, Krishna P, Ueda T, Kaku H, Shinuya N, Kawasaki T, Shimamoto K (2010) The Hop/Sti1-Hsp90 chaperone complex facilitates the maturation and transport of a PAMP receptor in rice innate immunity. Cell Host Microbe 7:185–196
Cho EK, Choi YJ (2009) A nuclear-localized Hsp70 confers thermoprotective activity and drought-stress tolerance on plants. Biotechnol Lett 31(4):597–606
Derrer B, Macheroux P, Kappes B (2013) The shikimate pathway in apicomplexan parasites: implications for drug development. Front Biosci 18:944–969
Dittmar KD, Demady DR, Stancato LF, Krishna P, Pratt WB (1997) Folding of the glucocorticoid receptor by the heat shock protein (hsp) 90-based chaperone machinery. J Biol Chem 272:21213–21220
Fellerer C, Schweiger R, Schöngruber K, Soll J, Schwenkert S (2011) Cytosolic HSP90 cochaperones HOP and FKBP interact with freshly synthesized chloroplast preproteins of Arabidopsis. Mol Plant 4(6):1133–1145
Hong SW, Vierling E (2001) Hsp101 is necessary for heat tolerance but dispensable for development and germination in the absence of stress. Plant J 27:325–335
Hutchison KA, Stancato LF, Owens-Grillo JK, Johnson JL, Krishna P, Toft DO, Pratt WB (1995) The 23-kDa acidic protein in reticulocyte lysate is the weakly bound component of the hsp foldosome that is required for assembly of the glucocorticoid receptor into a functional heterocomplex with Hsp90. J Biol Chem 270:18841–18847
Kenkel CD, Meyer E, Matz MV (2013) Gene expression under chronic heat stress in populations of the mustard hill coral (Porites astreoides) from different thermal environments. Mol Ecol 22:4322–4334
Kim KH, Alam I, Kim YG, Sharmin SA, Lee KW, Lee SH, Lee BH (2012) Overexpression of a chloroplast-localized small heat shock protein OsHSP26 confers enhanced tolerance against oxidative and heat stresses in tall fescue. Biotechnol Lett 34(2):371–377
Krishna P, Gloor G (2001) The Hsp90 family of proteins in Arabidopsis thaliana. Cell Stress Chaperones 6:238–246
Lässle M, Blatch GL, Kundra V, Takatori T, Zetter BR (1997) Stress-inducible, murine protein mSTI1. J Biol Chem 272:1876–1884
Lim CJ, Yang KA, Hong JK, Choi JS, Yun DJ, Hong JC, Chung WS, Lee SY, Cho MJ, Lim CO (2006) Gene expression profiles during heat acclimation in Arabidopsis thaliana suspension-culture cells. J Plant Res 119:373–383
McLaughlin SH, Sobott F, Yao ZP, Zhang W, Nielsen PR, Grossmann JG, Laue EE, Robinson CV, Jackson SE (2006) The co-chaperone p23 arrests the Hsp90 ATPase cycle to trap client proteins. J Mol Biol 356:746–758
Ni Z, Kim ED, Chen ZJ (2009) Chlorophyll and starch assays. Protoc Exch https://doi.org/10.1038/nprot.2009.12
Onuoha SC, Coulstock ET, Grossmann JG, Jackson SE (2008) Structural studies on the co-chaperone Hop and its complexes with Hsp90. J Mol Biol 379:732–744
Pratt WB, Toft DO (2003) Regulation of signaling protein function and trafficking by the hsp90/hsp70-based chaperone machinery. Exp Biol Med 228:111–133
Pratt WB, Silverstein AM, Galigniana MD (1999) A model for the cytoplasmic trafficking of signaling proteins involving the Hsp90-binding immunophilins and p50. Cell Signal 11:839–851
Prodromou C, Pearl LH (2003) Structure and functional relationships of Hsp90. Curr Cancer Drug Targets 3:301–323
Queitsch C, Hong SW, Vierling E, Lindquist S (2000) Heat shock protein 101 plays a crucial role in thermotolerance in Arabidopsis. Plant Cell 12:479–492
Qureshi MI, Qadir S, Zolla L (2007) Proteomics-based dissection of stress-responsive pathways in plants. J Plant Physiol 164:1239–1260
Scheibel T, Weikl T, Buchner J (1998) Two chaperone sites in Hsp90 differing in substrate specificity and ATP dependence. Proc Natl Acad Sci USA 95:1495–1499
Schöffl F, Prändl R, Reindl A (1998) Regulation of the heat-shock response. Plant Physiol 117:1135–1141
Seo S, Han YC, Lee JK, Park MS (1988) Seasonal distribution of production in cool-season grasses. I. Grass growth and seasonal distribution of production in orchardgrass dominated pasture. Korean J Anim Sci 30(2):130–136
Smith DF (2004) Tetratricopeptide repeat cochaperones in steroid receptor complexes. Cell Stress Chaperones 9:109–121
Stancato LF, Hutchison KA, Krishna P, Pratt WB (1996) Animal and plant cell lysates share a conserved chaperone system that assemblies the glucocorticoid receptor into a functional heterocomplex with Hsp90. Biochemistry 35:554–561
Sullivan WP, Owen BAL, Toft DO (2002) The influence of ATP and p23 on the conformation of hsp90. J Biol Chem 277:45942–45948
Tian J, Belanger FC, Huang B (2008) Identification of heat stress-responsive genes in heat-adapted thermal Agrostis scabra by suppression subtractive hybridization. J Plant Physiol 166(6):588–601
Van Santen E, Sleper DA (1996) Orchardgrass. In Cool-season forage grasses. American Society of Agronomy, Madison, pp 503–534
Vierling E (1991) The roles of heat shock proteins in plants. Annu Rev Plant Physiol Plant Mol Biol 42:579–620
Wang W, Vinocur B, Altman A (2003) Plant responses to drought, salinity and extreme temperatures: toward genetic engineering for stress tolerance. Planta 218:1–14
Wang W, Vinocur B, Shoseyov O, Altman A (2004) Role of plant heat-shock proteins and molecular chaperones in the abiotic stress response. Trends Plant Sci 9(5):244–252
Wang X, Xu C, Cai X, Wang Q, Dai S (2017) Heat-responsive photosynthetic and signaling pathways in plants: insight from proteomics. Int J Mol Sci 18:2191
Zhang Z, Quick MK, Kanelakis KC, Gijzen M, Krishna P (2003) Characterization of a plant homolog of Hop, a cochaperone of Hsp90. Plant Physiol 131:525–535
Zhao Q, Tobimatsu Y, Zhou R, Pattathil S, Gallego-Giraldo L, Fu C, Jackson LA, Hahn MG, Kim H, Chen F, Ralph J, Dixon RA (2013) Loss of function of cinnamyl alcohol dehydrogenase 1 leads to unconventional lignin and a temperature-sensitive growth defect in Medicago truncatula. Proc Natl Acad Sci USA 110:13660–13665
Acknowledgements
This research was supported by the Basic Science Research Program through the National Research Foundation of Korea (NRF) funded by the Ministry of Education (2009-0068189 and NRF-2013R1A1A2011511). This study was carried out with support of the Cooperative Research Program for Agriculture Science and Technology Development (Project no. PJ01193504) of the National Institute of Animal Science, Rural Development Administration, Republic of Korea.
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Communicated by Shunnosuke Abe.
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Cha, JY., Baek, D., Lee, KW. et al. Identification of heat shock-inducible transcripts and Hop (Hsp-organizing protein)-interacting proteins in orchardgrass (Dactylis glomerata L.). Acta Physiol Plant 40, 132 (2018). https://doi.org/10.1007/s11738-018-2708-6
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DOI: https://doi.org/10.1007/s11738-018-2708-6