Abstract
Based on the analyses of 1D and 2D NMR spectra techniques, such as H–H COSY, HSQC, and HMBC of 3-[L-threo-2,3,4-trihydroxy-1-(phenylhydrazono)butyl]- quinoxalin-2(1H)-one in dimethyl sulfoxide solution, it was concluded that this compound exists as a mixture of two isomeric Z- and E- forms I and II rather than the hydrazine imine and diazeny enamine V tautomers reported earlier. The NMR signals assignment was supported using density functional theory.
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The hydrazone function containing molecules constitutes an important class of organic compounds. Its ubiquity and versatility can be attributed to its ease of synthesis [1,2,3,4] and most importantly unique structural properties, which enable its existence in different isomeric forms [5,6,7,8,9]. Isomerism involving this function group has been extensively investigated in the recent years [10,11,12,13]. Add to that, literature survey showed that hydrazones possess a wide variety of biological activities [14,15,16,17,18] besides their utilization as molecular switches, metallo-assemblies, and sensors [19,20,21] in which such isomeric forms play an imperative role.
We have reported on the structure of the multi component reaction of L-ascorbic acid 1, o-phenylenediamine 2, and phenylhydrazine 3 as 3-[L-threo-2,3,4-trihydroxy-1-(phen-ylhydrazono)butyl]quinoxalin-2(1H)-one or [3-((2S,3S)-2,3,4-trihydroxy-1-(2-phenylhydrazono)butyl)-quinoxalin-2(1H)-one] 4 rather than the cyclic structure 5 (Scheme 1) [22, 23].
The structure 4 gave the triacetoxy analogue 6, which was secured by X-ray analysis [24]. Several reports were published concerning the syntheses of its analogues and showed their existence in two tautomeric forms with no definitive assignments given [25,26,27,28,29]. In 1990, we preferred the assignment of the two forms as hydrazone imine I and diazeny enamine V [24] as given for similar compounds [30] without perusing any evidence. Even though several reports were in support of such tautomerism for similar compounds, [5, 7] we have decided to re-investigate the isomerization of 4 in dimethyl sulfoxide solution using extensive 1D and 2D NMR techniques as well as density functional theory approach. The results are described and discussed.
Experimental
Synthesis
1H-NMR and 13C-NMR were recorded on Bruker 400 MHz spectrometers at ambient temperature. Chemical shifts (δ) are quoted in parts per million (ppm) and are referenced to the residual solvent peak: DMSO-d6, δ = 2.50 ppm (1H), δ = 39.52 ppm (13C). In DEPT experiment (135°), the employed parameters were the following: time domain 65536; FID resolution 0.366798 Hz; acquisition mode 1.3631988 s; dwell time 20.800 μs; pre-scan delay 6.00 μs. The parameters in the COSYGPMFQF: time domain 2048; spectral width 5376.344 Hz; FID resolution 2.625168 Hz; acquisition time 0.1905140 s; receiver gain 2050; dwell time 93.000 μs; prescan delay 6.00 μs. The parameters in the COSYQF45: time domain 1024; spectral width 2762.431 Hz. The HSQCETGPSI2 parameters were the following: time domain 1024; spectral width 5376.344 Hz; FID resolution 5.250336 Hz; acquisition time 0.0952820 s; receiver gain 2050; dwell time 93.000 μs; prescan delay 6.00 μs. The HMBC spectrum was determined with a pulse sequence GPNDQF: spectral width F2 (1H) 5376.344 and F1 (13C) 22321.429 Hz. Infrared spectra were recorded on Shimadzu FT-IR 8000S as KBr pellets, the absorption bands (ν max) cm-1 (Fig. S1). Mass spectra were recorded on Bruker MALDI microflex mass spectrometer (Fig. S2).
Compound 4 was prepared as described earlier [22, 23]. The TLC, IR, and mass spectra were in agreement with authentic sample prepared earlier [24].
Computational details
All calculations were performed using the GAUSSIAN 09 W [31]. Initially a conformational search for obtaining the most stable conformer was done using the semi-empirical PM3 method; the most stable conformer was subjected to full geometrical optimizations using DFT and Becke’s three-parameter hybrid exchange functional in combination with the gradient-corrected correlation functional of Lee, Yang, and Parr B3LYP/cc-pvtz method [32,33,34]. For all optimizations, the vibrational frequencies were checked for imaginary frequencies to ensure all final geometries corresponded to a true minimum on the electronic potential energy surface. 1H-NMR and 13C-NMR shieldings of the previously optimized compounds have been calculated using gauge-including atomic orbital GIAO/B3LYP [35,36,37] density functional method with cc-pvtz basis set. To evaluate the relative chemical shifts, the tetramethylsilane (TMS) was optimized and then its shielding constants were calculated at the same level of theory. The calculated isotropic shieldings for TMS are 31.74 for 1H and 185.02 for 13C at the DFT-B3LYP level of theory, using the basis set cc-pvtz. The inclusion of solvent (dimethyl sulfoxide) in both structures optimization and NMR calculations was done via the inclusion of the polarisable continuum model (PCM) [38].
Results and discussion
Theoretically sixteen isomeric/tautomeric structures hydrazone-imine-amide (Z and E), hydrazone-imine-iminol (Z and E), diazenyl enamine-amide, diazenyl enamine-iminol, and α- and β-ring-chain forms I–XVI can be written for compound 4 (Fig. 1).
The NMR studies of 4 have not been reported in detailed before. In the present investigation, the 1H-NMR spectrum in dimethyl sulfoxide-d6 (DMSO-d6) of 4 was obtained and shown in supplementary data (Fig. S3) as a mixture of two isomeric forms in 2:1 ratio (A and B). The structure and atom labeling of 4 is illustrated in Fig. 2.
1H-NMR
The signals of the exchangeable protons (OHs and NHs) (Table 1) appeared at δ 4.43, 4.70, 5.12, 6.00, 10.26, 10.68, and 12.54 ppm as broad singlets of 1.32 H, 1.00 H, 0.33 H, 0.33 H, 0.66 H, 0.33 H, and 1 H intensities, respectively. While the sugar moiety appeared as two multiplets at δ 3.43, 3.55, broad quartets at δ3.79, 4.01 and doublet at δ 4.77 and 5.27 ppm (see Table 2). The phenyl group protons showed collapsed two triplet of triplets at δ 6.77 and 6.81, two doublet of doublets at δ 7.09, 7.23, two triplets at δ 7.19, 7.13, two multiplets at δ 7.35, 7.29, two doublet of doublets at δ 7.37, 7.32, triplet of doublets at δ 7.50, triplet of doublets at δ 7.59, doublet of doublets at δ 7.71, and doublet of doublets at δ 7.85 ppm (see Table 2). Moreover, assignments based on1H–13C HSQC experiment for hydrogenated aromatic carbons are shown in Table 3 & for assignments see Fig. S3.
These assignments were supported by the two-dimensional 1H–1H COSYGPMFQF NMR (gradient-selected multiple-quantum-filtered COSY, Bruker pulse program). The COSY spectrum of 4 (Fig. S4) confirms the correlation assignments of H-4"s at δ 3.43, 3.55 (A and B) and H-3"s (A and B) at δ 3.79, 4.01. H-3"s show correlation with H-4" and H-2"s of A and B at δ 4.77 and 5.27 ppm. Based on the correlation with protons of H-4", H-3", and H-2" of A and B, one can assign the exchangeable Hs at δ 4.43 ppm for OHs on (C-2" A and C-3" A), 4.70 ppm for OHs on (C-4" A and C-2" B), 5.12 ppm for OH on C-3" B, and 6.00 ppm for OH on C-4" B (Fig. S5).
In order to give more detailed explanation for the assignment of the exchangeable protons, the values of the peaks intensity have been divided according to the ratio 2:1 of the isomers A and B, respectively (Table 1). In addition, as indicated from the calculated chemical shift, that OHs are more shielded than NHs have also been considered. Accordingly, the peak at δ 4.43 ppm represents two hydroxyl groups of isomer A. While peak at δ 4.70 represents an overlapped peak for one hydroxyl group of each isomer. The other two hydroxyl group of minor isomers (B) appeared at δ 5.12 and 6.00 ppm, while its NHs appeared highly deshielded at 10.68 and 12.54.
Although the spectrum was clear for the aliphatic region, it showed a complicated pattern in the aromatic region. The 1H–1H COSYGP45 was then used instead (Fig. S6) and it was possible to assign the phenyl and quinoxalinyl protons (Table 2). The expected splitting patterns of H-5 and H-8 as well as H-6 and H-7 should be the same. From the computational data, H-5 is the most deshielded one which appeared at δ 7.85 and 7.71 ppm for A and B isomers, respectively. As COSY indicates the correlation with coupled protons, it was concluded that the protons located at δ (7.35, 7.29), (7.59, 7.50), and (7.37, 7.32) are correlated to each other and they were assigned for (H-6 A & B), (H-7 A & B), and (H-8 A & B), respectively. (Fig. S6).
13C-NMR
The spectrum showed twenty-nine signals for both isomeric forms A & B (Fig. S7). From the DEPT 135 experiment (Fig. S8), the CH2, CH, and quaternary carbon signals were observed and overlapping of signals was confirmed.
1H–13C HSQC
In DMSO-d6, the signals owing to C-4", C-3", and C-2" atoms of 4 were observed in the HSQC NMR spectrum at the δ 62.50 (A & B), 73.19 (A), 73.09 (B), and 72.76 (A), 70.62 (B), respectively (Fig. S9). The CH aromatic carbons were assigned based on their correlation with corresponding Hs (Fig. S10) and summarized in Table 3.
1H–13C HMBC
The long-range HMBC (Fig. S11) cross peaks of 4 in DMSO-d6 showed correlation between hydrazono NH 10.26 & 10.68 and C-1" δ 145.09 (A) and 144.63 (B), respectively, in addition to a clear correlation between the NH at δ 10.26 and C-2‘, C-6’ at δ 112.80 (Fig. 3). These findings ruled out structures V–XII which lack the hydrazono proton.
Moreover, existence of correlation between H-2" 4.77 & 5.27 and C-1" δ 140.05 (A) and 140.83(B), respectively, secured the assignment of the C-1” resonance. Furthermore, the experimental chemical shift of C-1” (δ 140.05 (A) and 140.83(B)) is in accordance and good agreement with the calculated shift for C-1” (≈ 143 ppm) of structures I–IV and quite far from the calculated shift (~ 100 ppm) for the sp3 carbon arised from cyclization of the sugar moiety in cyclic structures XIII–XVI. Accordingly, structures XIII–XVI were ruled out. Also, the 2D spectra showed the presence of correlation between the H-5 δ 7.85 and 7.71 for both isomers and the carbon at δ 132.23 confirming that this resonance belongs to C-10. On the other hand, the correlation between H-8 δ 7.37 and 7.32 and δ 131.85 and 131.42, respectively, lead to assigning this resonance to C-9. This leaves the remaining δ 153.70, 154.22, and 154.24 for C-3 and C-2 which their assignments were secured by the theoretical calculation (Table 4).
The stability of the quinoxalin-2(1H)-one structure (I and II) over the 2-hydroxyquinoxaline (III and IV) in dimethyl sulfoxide solution could be explained by the complexation of 4 with dimethyl sulfoxide as a solvent via intermolecular hydrogen bonding that prefer N-H---O than O-H---O due to steric effect (Fig. 4). Moreover, dimethyl sulfoxide was reported to preferentially stabilize the more polar structures [39] which is the case in I and II over structures III and IV as indicated from their dipole moments. The complexation to the solvent was detected from 13C-NMR which showed two sets of resonances of dimethyl sulfoxide corresponding to complex structures with A and B (Fig. S12). Thus, structures III and IV are ruled out.
Molecular structure and optimized geometry
Optimized geometries of the two isomers I and II of compound 4 are shown in Fig. 5. The atomic labeling of the two isomers is shown in Figs. S13 and S14 in the supplementary data. The optimized geometrical parameters (bond length, angles, and dihedral angles) are listed in Table S1 which reveals that the geometry of E-isomer II enables it to form two intramolecular hydrogen bonds. The first one is between the last two hydroxyl groups of the sugar moiety (O..H-O with bond distance of 2.061 Å). The second one is between the oxygen of the carbonyl of the quinoxaline ring and the hydrogen of NH of the hydrazone moiety (O....H-N with distance of 1.850 Å). This was obviously noticed in the bond length of the hydrazone N-H where E-isomer II has relatively longer N-H (1.028 Å ) than in Z-isomer I (1.016 Å ). Another observation is that hydrogen bonded NH of E-isomer II vibrates at lower wave number (3293 cm-1) relative to that of the Z-isomer (3512 cm-1). This should be clear because hydrogen bond lengthens and weakens the N-H bond making it vibrates or stretches at lower energy.
Calculated NMR spectra
Experimental and DFT-calculated chemical shifts (with respect to TMS) for all carbons and non-exchangeable protons of the Z- and E- isomers (I and II) of compound 4 are listed in Tables 2 and 4. The mean absolute error (MAE) is used to measure how close the calculated and experimental chemical shifts. Since the DFT-calculated chemical shifts for exchangeable protons is not reliable because it depends very highly on the dynamics, solvation, concentration, temperature, and etc. of the sample, it is not included in MAE calculations. MAEs were found to be 0.12 and 0.41 ppm as a result of comparison for experimental and calculated 1H-chemical shift of E- and Z-isomers, respectively, indicating quite similarity for the practical and predicted 1H-NMR chemical shifts. On the other hand, MAEs for carbon chemical shifts were found to be greater than 2 ppm for both isomers. This obviously shows the larger deviation of carbon chemical shifts from the experimental data than those of proton chemical shifts. To ensure that B3LYP findings for carbon chemical shifts are still in good agreement with the experimental data, their relationship was drawn in Fig. 6. It was found that there is an excellent linear relationship between the experimental carbon chemical shift and the theoretical shift with a linear correlation coefficient of R2 = 0.98 and 0.97. This reveals slightly good fitting of the data.
DFT-calculated 1H-NMR chemical shifts for exchangeable protons are listed in Table 5. The calculations showed that the hydrogen of hydrazono NH of the E-isomer (appeared at 11.00 ppm) is more deshielded relative to that in the Z-isomer (appeared at 7.89 ppm). This could be explained on the basis that E-isomer is characterized by the N-H….O hydrogen bond. This HB makes the hydrogen located between two electronegative elements, namely, nitrogen and oxygen which makes hydrogen resonates at relatively high chemical shift causing the relative deshielding. While the Z-isomer lacks this effect. Furthermore, hydrogen atom of the hydroxyl group bonded to (C-2") in E-isomer appeared at 3.50 ppm which is obviously more deshielded than that of the Z-isomer (3.00 ppm) due to the hydrogen bond formation in the former isomer. It is also noticed that OHs are more shielded than NHs for the two isomers (Table 5).
Conclusion
The 1D and 2D NMR spectral data analysis confirmed the existence of compound 4 as an isomeric mixture of Z and E forms I and II rather than the hydrazone imine and diazeny enamine tautomers, and complete assignment for carbon and hydrogen atom signals is reported. Accordingly, the previous reported work should be corrected. It is worth noting that our present finding is in accordance with recently published work for similar system [40].
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This work is supported by the Deanship of Scientific Research, Taibah University, SA (#7101).
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El-Atawy, M.A., Hegazi, A.H., Al Khalaf, M. et al. The structure elucidation of the isomeric mixture of 3-[L-threo-2,3,4-tri -hydroxy-1-(phenyl-hydrazono)butyl] quinoxalin-2(1H)-one in dimethyl sulfoxide solution revisited: experimental and theoretical study. Struct Chem 31, 1065–1072 (2020). https://doi.org/10.1007/s11224-019-01445-3
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DOI: https://doi.org/10.1007/s11224-019-01445-3