Abstract
Inspired by the highly effective and broad-spectrum antifungal activity of ergosterol biosynthesis inhibitions, a series of novel 1,2,4-triazole derivatives containing oxime ether moiety were constructed for screening the bioactivity against phytopathogenic fungi. The (Z)- and (E)-isomers of target compounds were successfully separated and identified by the spectroscopy and single crystal X-ray diffraction analyses. The bioassay results showed that the (Z)-isomers of target compounds possessed higher antifungal activity than the (E)-isomers. Strikingly, the compound (Z)-5o exhibited excellent antifungal activity against Rhizoctonia solani with the EC50 value of 0.41 μg/mL in vitro and preventive effect of 94.58% in vivo at 200 μg/mL, which was comparable to the positive control tebuconazole. The scanning electron microscopy observation indicated that the compound (Z)-5o caused the mycelial morphology to become wizened and wrinkled. The molecular docking modes of (Z)-5o and (E)-5o with the potential target protein RsCYP51 were especially compared. And the main interactions between ligands and amino acid residues were carefully analyzed to preliminarily explain the mechanism leading to the difference of activity between two isomers. The study provided a new lead molecular skeleton for developing novel triazole fungicides targeting ergosterol biosynthesis.
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Introduction
Phytopathogenic fungi have become the culprits of food safety and agricultural yield reductions [1, 2]. As the vital method to effectively control phytopathogenic fungi, agricultural fungicides should not only equip with highly effective bioactivities, but also possess the unique capability to distinguish fungi from plants and animals. Ergosterol plays an important role in mediating the permeability and fluidity of fungi cell membranes, and is structurally different from those sterols contained in animals and plants [3,4,5]. The lanosterol 14α-demethylase (coded by CYP51) belonging to a cytochrome P450 catalyzes the biosynthesis of ergosterol that maintains the integrity and rigidity of fungal cell membranes [3, 6]. Once the above ergosterol biosynthesis is hindered, fungal cell membranes will be speedily destructed, which finally result in the inhibition or death of phytopathogenic fungi [7]. During the last three decades, the distinctive function of CYP51 inspired the development of demethylation inhibitors (DMIs) that feature broad-spectrum bioactivities, convenient syntheses and affordable prices [8]. Triadimefon (Fig. 1) featuring strong systemic absorption and persistence was developed as the DMI fungicide that mainly used in controlling powdery mildew, rust and loose smut [9]. Subsequently, numerous antifungal molecules were successively developed as the commercialized DMIs with high efficiency, low toxicity and broad-spectrum properties, such as diniconazole, tebuconazole, flusilazole and imibenconazole [10,11,12]. These DMI fungicides mentioned-above tend to have some common structural features that were descripted below. One structural feature could be expressed as the introduction of benzene ring and 1,2,4-triazole fragments. Another is the presence of a special bridge that used to link the benzene ring and 1,2,4-triazole fragments, such as ether chain (triadimefon), alkene chain (diniconazole), alkyl chain (tebuconazole), silyl linkage (flusilazole) and Schiff base bridge (imibenconazole) (Fig. 1). A large number of publications have indicated that altering the bridge group in DMIs is one of the important ways to develop new compounds with high antifungal activity [3, 13, 14].
Oxime ethers are the highly effective and low toxicity fragments that were widely used in the development of anticancer, bactericides, herbicides, fungicides, viricides and insecticides, and have occupied a more important position in fungicides [13,14,15,16,17,18,19,20]. In 1974, DuPont successfully developed the first oxime ether fungicide cymoxanil that mainly used to control downy mildew and late blight [21]. Subsequently, oxime ether fungicides were developed rapidly. During 1995–2003, a series of methoxyacrylate fungicides containing an oxime ether fragment as the bridge group, such as trifloxystrobin, orysastrobin, enostroburin and fenaminostrobin, were discovered successively. Due to their unique mechanism of action and environmental friendliness, more attention was paid to the development of oxime ether fungicides [22]. Some other commercialized fungicides containing a oxime ether bridge structure, such as picarbutrazox and pyribencarb, were also disclosed to protect excellently tomatoes, rice, soybeans and other crops from a range of pathogenic fungi [23,24,25]. Latterly, the researchers reported that the derivatives containing an oxime ether as a bridge group possessed better bioactivity than those containing an amide bridge in succinate dehydrogenase inhibitors (SDHIs) and other bridges in many other compounds by molecule docking [26]. These evidences persuaded us to choose the oxime ether as a bridge group to design new triazole compounds.
In order to search novel lead molecules of ergosterol biosynthesis inhibitions (DMIs), the oxime ether fragment was used to bridge the 1,2,4-triazole and substituted phenyl groups to construct the basic target molecular skeleton (Fig. 2). The cyclohexyl group considered as a typical hydrophobic group has effectively improved the lipophilicity of some fungicides, such as cyclafuramid, fenhexamid and SYAUP-CN-26 [27,28,29], and was introduced into the bridge segment of the target molecules. The designed compounds were synthesized and separated by the column chromatography to obtain corresponding (Z)-isomers and (E)-isomers, which were, respectively, evaluated for the bioactivity in vitro against phytopathogenic fungi. The highly active compound (Z)-5o was selected to determine the antifungal activity in vivo and the effect on mycelial cell morphology. Moreover, the two isomers (Z)-5o and (E)-5o were, respectively, docked with the potential target protein RsCYP51, a homology model was constructed by the amino acid sequences of Rhizoctonia solani and selected the protein CYP51 (PDB code: 4UHL) as template. The molecular docking results preliminarily explaining the mechanism leading to the difference of antifungal activity.
Results and discussion
Preparation of target compounds
The synthesis route of designed target compounds, i.e., 1,2,4-triazole derivatives containing the oxime ether and cyclohexyl fragments as potential ergosterol biosynthesis inhibitors, together with the separation way of (Z)/(E)-isomers were shown in Scheme 1 [15, 30, 31]. As the mixtures of two isomers, the target products 5a–5q were synthesized by four steps of bromination, triazole substitution, oximation and oxime etherification. The first intermediate 2-bromo-1-cyclohexylethan-1-one 2 was obtained by the reaction of starting material 1-cyclohexylethan-1-one 1 with the bromination reagent N-bromosuccinimide (NBS) in the presence of trimethylsilyl trifluoromethanesulfonate (TMS·OTf) as the initiator. The compound 2 was reacted with sodium 1,2,4-triazole to conveniently synthesize the intermediate 1-cyclohexyl-2-(1H-1,2,4-triazol-1-yl) ethan-1-one 3, which was oximated by hydroxylamine hydrochloride with potassium carbonate as the acid binding agent to generate the crucial intermediate 1-cyclohexyl-2-(1H-1,2,4-triazol-1-yl)ethan-1-one oxime 4. Then, different substituted benzyl chlorides were, respectively, reacted with the compound 4 to give the target compounds 5a–5q, which were further separated by silica gel column chromatography to contribute the (Z)-isomers of (Z)-5a–(Z)-5l, (Z)-5n, (Z)-5o, and (Z)-5q, and (E)-isomers of (E)-5a–(E)-5q.
Structural characterization of target compounds
All the prepared target compounds including 15 (Z)-isomers and 17 (E)-isomers were characterized, respectively, by 1H-NMR, 13C-NMR, and HRMS spectra. Some compounds containing fluorine atom were confirmed by 19F-NMR spectrum. The collected spectral data were consistent with the target molecules. Furthermore, the compound (E)-5h was deeply analyzed as a typical example using the single crystal X-ray diffraction. As a solid, the compound (E)-5h was dissolved in a mixed solution of dimethyl sulfoxide and methanol (V:V = 1:3). After slow volatilization at room temperature, a colorless transparent crystal was obtained. The crystal diffraction data were collected and analyzed by the reported methods [32]. The compound (E)-5h crystallized in the monoclinic, space group P21/c. The corresponding crystal structure diagram and crystal packing diagram are shown in Fig. 3A, B.
In vitro antifungal activity
In vitro antifungal activities of target compounds were determined against Rhizoctonia solani (R. solani), Fusarium graminearum (F. graminearum), Botrytis cinerea (B. cinerea), and Alternaria solani (A. solani) at 50 μg/mL by a typical mycelial growth rate method [33, 34]. As shown in Table 1, the bioassay data indicated that the constructed target compounds selectively possessed dramatic antifungal effects against R. solani, F. graminearum, and B. cinerea. Firstly, the inhibitory rates of the target compounds against R. solani were between 53.6% and 90.9%, which were all superior to that of the control fungicide hymexazol (49.4%). Among which the inhibitory rates of compounds (Z)-5a, (Z)-5c, (Z)-5d, (Z)-5f, (Z)-5g, (Z)-5i–(Z)-5l, (Z)-5n, (Z)-5o, (E)-5e–(E)-5h, and (E)-5j–(E)-5p reached above 80%, especially the rate of compound (Z)-5o was as high as 90.9%. Secondly, the target compounds also showed obvious bioactivity against F. graminearum with the inhibitory rates of 45.3–89.1%, which were higher than that of hymexazol (43.8%). In particular, the compounds (E)-5g, (E)-5h, (E)-5k, (E)-5m, and (E)-5p exhibited high inhibitory rates of 73.8%, 72.4%, 73.0%, 76.8%, and 89.1%, respectively. Moreover, there are eight compounds showing good activity with the inhibitory rates over 60% against B. cinerea. As the best of them, the compound (E)-5p exhibited the inhibition rate of 71.9% to this fungus.
On the basis of the above bioassay results of inhibition rates, the EC50 values of the target compounds against R. solani and F. graminearum were determined for further evaluating the antifungal activity in vitro. As recorded in Table 2, the target compounds showed better bioactivity against R. solani than F. graminearum, which was consistent with the inhibition rate data described above. The EC50 values (0.41–29.51 μg/mL) of all the target compounds were more admiring than that of the control drug hymexazol (47.94 μg/mL), four compounds (Z)-5g, (Z)-5k, (Z)-5o, and (E)-5o of which presented very efficient bioactivity with the EC50 values of 0.80, 1.08, 0.41, and 1.12 μg/mL, respectively. Strikingly, the anti-R. solani activity of compound (Z)-5o was even slightly better than that of the common fungicides carbendazim (EC50 = 0.55 μg/mL) and tebuconazole (EC50 = 0.51 μg/mL). The inhibitory effect photographs of target compounds (Z)-5o and (E)-5o against R. solani were, respectively, illustrated in Fig. 4A, B. As for the EC50 values against F. graminearum, all the target compounds except (E)-5a, (E)-5d, (E)-5e, (E)-5j, and (E)-5n showed better bioactivity data (7.59–41.36 μg/mL) than hymexazol (46.09 μg/mL). Also noteworthy, there were four compounds (Z)-5e, (E)-5m, (Z)-5o, and (E)-5p exhibiting appreciable the EC50 values below 10 μg/mL.
Structure–activity relationship (SAR) analysis
According to the EC50 data against R. solani and F. graminearum, the structure–activity relationship (SAR) of the target compounds was analyzed to conclude following two important rules. The first is that the antifungal activity of (Z)-isomers was generally better than that of (E)-isomers. Apart from the (Z)-isomers of 5e and 5h, and the (E)-isomers of 5e, 5h, 5m, and 5p, all the other (Z)-isomers displayed more preferable EC50 values than the corresponding (E)-isomers. For an example, the different isomers (Z)-5o and (E)-5o, respectively, presented the EC50 values of 0.41 and 1.12 μg/mL against R. solani, and 9.24 and 65.96 μg/mL against F. graminearum. The second conclusion is that different substituents at the benzene ring showed significant effects on the antifungal activity. When the benzene ring contains the bulky electron absorbing groups, such as Cl, Br or CF3, it is helpful to improve the antifungal activity. In particular, when any of the three groups was introduced to the 4-position of the benzene ring, the corresponding compounds showed perfect antifungal activity, which is particularly obvious in the inhibition against R. solani. For example, this is the case with the compounds (Z)-5g and (E)-5g (R1 = 4-Cl, anti-R. solani EC50 = 0.80 and 9.23 μg/mL, respectively), (Z)-5k and (E)-5k (R1 = 4-Br, anti-R. solani EC50 = 1.08 and 7.52 μg/mL, respectively), and (Z)-5o and (E)-5o (R1 = 4-CF3, anti-R. solani EC50 = 0.41 and 1.12 μg/mL, respectively).
In vivo anti-R. solani activity of compound (Z)-5o
Encouraged by the in vitro bioassay result, the in vivo preventative effect experiment of the highly bioactive compound (Z)-5o was conducted for further evaluating the practical application value as a potential DMI fungicide. The commonly used fungicide validamycin and representative DMI fungicide tebuconazole were selected as the positive controls. The in vivo bioassay results against R. solani inoculated on rice leaves were vividly illustrated in Fig. 5. From Fig. 5, it can be seen that the compound (Z)-5o at 200 μg/mL showed excellent bioactivity in vivo, with the preventative efficacy of 94.50%, which was very close to that of tebuconazole (96.33%). When the concentration of (Z)-5o was diluted to 100 μg/mL, its bioactivity remained at 50.27%, which was significantly higher than that of tebuconazole (30.19%). This in vivo bioassay result implies the rationality of the molecular design of the target compounds represented by compound (Z)-5o. At the same time, as a new class of DMI lead molecules, the 1,2,4-triazole derivatives containing the oxime ether and cyclohexyl fragments have the potential to further optimize the structures for improving their antifungal activity.
Effect on hyphae morphology of compound (Z)-5o
The scanning electron microscopy (SEM) was used to investigate the mycelium morphology of R. solani influenced by compound (Z)-5o at 50 μg/mL and meanwhile, the equivalent solvent DMSO was used as the blank control. As the SEM images shown in Fig. 6A–C, the mycelia treated with DMSO was normal, their appearances were plump and their surfaces were smooth. On the contrary, after the mycelia was treated with the compound (Z)-5o, they became abnormal, their appearances looked wizened and their surfaces seemed wrinkled (Fig. 6D–F). This phenomenon indicated that the compound (Z)-5o, like other traditional triazole fungicides, can inhibit mycelial growth by inhibiting ergosterol biosynthesis to affect the normal function of cell membrane.
Molecular docking comparison of isomers (Z)-5o and (E)-5o with RsCYP51
The (Z)-isomer and (E)-isomer of a same compound usually show different degrees of antimicrobial activity, but there are few reports on the mechanism leading to this difference of bioactivity [35,36,37]. Molecular docking study not only provides an insight between ligand and macromolecules in binding location, but also confirms the experimental observations to a certain degree [38]. In the present work, the molecular design focused on ergosterol biosynthesis inhibitions (DMIs) strikingly resulted in the discovery of promising candidate (Z)-5o that presented the conspicuous inhibitory effect against R. solani in vitro and in vivo. However, its corresponding isomer (E)-5o showed lower antifungal activity, whether against R. solani or F. graminearum. Thereupon, the binding modes of the both isomers (Z)-5o and (E)-5o with RsCYP51 were, respectively, analyzed to preliminarily explore the molecular mechanism leading to differences in antifungal activity by molecular docking method.
The homology model of RsCYP51 was built by Swiss-model online website at the beginning process. The constructed homology models were verified the reliability by Pymol and found it possessed the best alignment with the template. The Ramachandran plot and RMSD values were 87.42% and 0.137, respectively. The molecular docking results revealed that the binding energies of (Z)-5o and (E)-5o were separately − 8.55 and − 6.76 kJ/ mol. The lower binding energy meant that (Z)-5o bound more closely to the target protein, which is consistent with its higher antifungal activity. Furthermore, the molecular docking diagrams of target compounds (Z)-5o and (E)-5o with RsCYP51 are illustrated in Fig. 7A–C and D, F, respectively. There are 17 interactions between compound (Z)-5o and surrounding amino acid residues with bond length less than 5 Å (Fig. 7C), compared only 11 interactions of (E)-5o (Fig. 7F). Both ligand molecules interacted with amino acids mainly through 1,2,4-triazole ring, cyclohexyl group, benzene ring and trifluoromethyl connected at 4-position of benzene ring. The interactions between triazole ring and residues in the two molecules included the key coordination between the 4-position nitrogen atom of triazole and the iron ion in porphyrin heme (HEM), the π–π stacking interaction of triazole ring with HEM, and the σ–π stacking interaction of triazole ring with alanine (ALA A:304), which reflected that the two isomers (Z)-5o and (E)-5o have a similar mode of action with the target protein. However, the interactions between trifluoromethyl and surrounding amino acid residues were significantly different between the two isomers. For (Z)-5o, the three fluorine atoms of its trifluoromethyl formed seven different types of hydrogen bonds with glycine (GLY A:385), alanine (ALA A:386), serine (SER A:384) and threonine (THR A:494), respectively (Fig. 7C). In contrast, (E)-5o only formed only one hydrogen bond with glutamine (GLN A:145) (Fig. 7F). The strong hydrogen bond interactions between (Z)-5o and the amino acid residues of the target protein led to its low binding energy, which may be the main reason why its antifungal activity was higher than that of (E)-5o.
Conclusions
For the purpose of screening new ergosterol biosynthesis inhibitors (DMIs), a series of triazole derivatives containing the oxime ether bridge group were designed, synthesized and characterized by 1H NMR, 13C NMR, 19F NMR, HRMS and X-ray diffraction analyses. The bioassay results indicated that the target compounds possessed good antifungal activity against R. solani, F. graminearum and B. cinerea. The (Z)- and (E)-isomers of target compounds were successfully separated, and most of the (Z)-isomers showed higher antifungal activity than the corresponding (E)-isomers. As a most promising target compound, (Z)-5o was found possessing excellent antifungal activity against R. solani with the EC50 value of 0.41 μg/mL in vitro and preventive effect of 94.58% in vivo at 200 μg/mL, which was even comparable to the common commercialized fungicide tebuconazole. The compound (Z)-5o could significantly inhibit mycelial growth by destroying mycelial cell membrane. By comparing the molecular docking modes of (Z)-5o and (E)-5o with the potential target protein RsCYP51, it was preliminarily clarified that (Z)-5o effectively reduced the binding energy through strong hydrogen bond interactions with the amino acid residues of the target protein and made its antifungal activity higher than compound (E)-5o.
Materials and methods
Instruments and chemicals
The solvents and reagents, used directly for synthesizing the target compounds, were purchased from commercial pathways (Nanjing Wanqing Glass Instrument Co. Ltd and Nanjing Lattice Chemical Technology Co. Ltd, etc.). An uncorrected Automatic Melting Point Apparatus (Staffordshire, UK) was selected to measure the melting point of solid compounds. The 1H NMR, 13C NMR, and 19F NMR were recorded on a 400 MHz NMR spectrometer ((Bruker, Germany) with CDCl3 as the solvent and TMS (tetramethylsilane) as the internal standard. Data for [M + H]+ values were collected on a Triple TOF 5600 Plus LC/MS/MS spectrometer (AB Sciex, America). Thin-layer chromatography (Yuhua, China) and ultraviolet detector (UV, 254 nm) were chosen to monitor the whole synthetic stage. Ultrastructure of fungal mycelium was observed by a SU8018 scanning electron microscope (Hitachi, Japan).
Synthesis procedures for intermediates 2–4
The starting material 1-cyclohexylethan-1-one 1 (1.5 g, 11.9 mmol) dissolved in acetonitrile (20 mL) was firstly added into a 50 mL three-necked flask. Then, N-bromosuccinimide (NBS) (4.2 g, 23.7 mmol) and the initiator trimethylsilyl trifluoromethanesulfonate (TMS·OTf) (0.13 g, 0.6 mmol) was successively added. After the mixed solution was stirred at room temperature for 24 h, the solvent was removed by decompressive distillation. The residue was extracted three times with dichloromethane (20 mL × 3). The organic phases were combined, dried with anhydrous sodium sulfate, filtered and concentrated on vacuum to obtain a yellow oil, namely 2-bromo-1-cyclohexylethan-1-one 2, in yield of 88%.
The compound 2 (1.67 g, 8.15 mmol) was dissolved in 5 mL of acetonitrile and added dropwise to the acetonitrile solution (20 mL) containing sodium 1,2,4-triazole (0.89 g, 9.77 mmol). After heating and refluxing for 5 h, the reaction solution was concentrated under reduced pressure. The resulting mixture was extracted with dichloromethane for three times (20 mL × 3). The organic phases were combined, dried, filtered and followed by the removal of acetonitrile under vacuum to obtain a yellow light oily liquid named 1-cyclohexyl-2-(1H-1,2,4-triazol-1-yl)ethan-1-one 3 in yield of 78%.
The compound 3 (1.28 g, 6.6 mmol) and potassium carbonate (1.37 g, 9. 9 mmol) were successively added to a 50 mL three-necked flask under ice bath. Hydroxylamine hydrochloride (0.92 g, 13.2 mmol) dissolved in 6 mL of water was added dropwise to the above reaction solution. The obtained mixture was then heated and refluxed for 6 h. After concentrating under reduced pressure, the residue was added into 10 mL of ice water, precipitated and filtered to give a white solid with a yield of 75%, that is 1-cyclohexyl-2-(1H-1,2,4-triazol-1-yl)ethan-1-one oxime 4.
Synthesis procedures for target compounds and separation of (Z)/(E)-isomers
The intermediate 4 (0.5 g, 2.4 mmol) was dissolved in 20 mL of N,N-dimethyl formamide (DMF), and 60% NaH (0.12 g, 2.9 mmol) dissolved in 5 mL DMF was then added slowly dropwise. After the mixture was stirred for 0.5 h in an ice bath, the various of substituted benzyl chloride (2.9 mmol) was added dropwise. The reaction solution was continuously stirred in an ice bath for 1 h, and then in room temperature for 4 h. The organic phase was extracted three times by ethyl acetate (20 mL × 3), washed twice in turn with saturated sodium bicarbonate and salt water, dried over anhydrous sodium sulfate, filtered and concentrated under low pressure to obtain the 1,2,4-triazole derivatives containing the oxime ether moiety 5a–5q. The (Z)/(E)-isomers were separated and purified one by one by silica gel column chromatography (isopropanol + petroleum ether, V:V = 1:16) to present the desired target compounds (Z)-5a–(Z)-5l, (Z)-5n, (Z)-5o, (Z)-5q and (E)-5a–(E)-5q.
Antifungal bioassay of target compounds in vitro and in vivo
The mycelium growth inhibition method was used to test the in vitro antifungal potential of target compounds against four important agricultural pathogenic fungi, R. solani, F. graminearum, B. cinerea and A. solani [39,40,41]. Three commercialized pesticides were selected as the positive control, including hymexazol, carbendazim and tebuconazole, which are usually applied to control one or more plant diseases caused by above plant pathogenic fungi [42,43,44]. The dimethylsulfoxide (DMSO) solution (100 µL) containing different concentrations of the test compounds was first added in 45 mL of potato dextrose agar (PDA) medium. After shaking completely well, the medium was equally poured into three nine-centimeter petri plates. Meanwhile, three above-mentioned positive controls and blank control which containing same amount of DMSO were elaborately set. After the mediums were solidified, the mycelium dishes with a diameter of 5 mm were inoculated onto the medium centers and cultivated for 2–6 days at 25 ± 1 °C in dark environment. When the colony diameter of the blank control reached about 70 mm, the colony diameters of different treatments were measured to calculate the inhibition rates of test compounds. Subsequently, the inhibition rates of the target compounds against R. solani and F. graminearum at five appropriate concentrations were determined, which were used to establish the regression equations and calculate the respective EC50 values.
The compound (Z)-5o with the best antifungal activity against R. solani was further tested the antifungal activity in vivo using detached rice leaf assay [45]. The fresh rice leaves were cut to 10 cm long segments and maintained the leaves moist until use. The compound (Z)-5o and positive control tebuconazole were dissolved in proper amount of DMSO and diluted using 0.05% Tween-80 to obtain the 200 µg/mL solutions. The equal amount of DMSO was served as the blank control. After the prepared solutions were sprayed on the surface of the rice leaves for 24 h, the 5 mm mycelium disks of R. solani were inoculated onto the leaf center with 15 repetitions. The treatments were cultivated at 25 ± 1 °C under the 12 h-light and 12 h-dark cycle condition. When the disease spots basically spread throughout the rice leaves, the lengths of the lesion were measured to calculate the preventative efficacies.
SEM study
The fungus R. solani was cultivated on PDA medium containing 50 μg/mL of compound (Z)-5o and on the medium containing the same amount of solvent DMSO as the blank control. When the mycelium of the blank control grew to half of the medium diameter, the 5 mm long and 2 mm wide mycelium blocks were cut from the edge of colony. The samples treated by the previously reported method were observed with the scanning electron microscopy (SEM) [46].
Molecular docking study
The three-dimensional structures of compounds (Z)-5o and (E)-5o were drawn and optimized by SYBYL 2.0 software (Shanghai Tri-I. Biotech. Inc., China). Swiss-model online software (https://swissmodel.expasy.org/) was used to rebuilt the three-dimensional structures of RsCYP51 (CYP51 from R. solani). The template protein (PDB code: 4UHL) and RsCYP51 protein sequence were downloaded from the RCSB protein database (https://www.rcsb.org/) and Uniport (https://www.uniprot.org), respectively. The molecular docking was completed by the AutoDock 4.2.6. Pymol 1.7.6 was used to handle the docking results, conduct the alignment of 4UHL, and constructed protein. And Discovery studio 4.5 was used to calculate the binding energies and generate the docking resulting figures.
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Acknowledgements
The authors gratefully acknowledge the grants from the National Natural Science Foundation of China (No. 31772209) and the Fundamental Research Funds for the Central Universities of China (No. KYTZ201604).
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Funding was provided by Innovative Research Group Project of the National Natural Science Foundation of China (Grant No. 31772209), Fundamental Research Funds for the Central Universities (Grant No. KYTZ201604).
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Appendix A
Appendix A
The physical and spectroscopic data, crystal structure information and molecular docking related information of target compounds are provided in the Supporting Information. The copies of corresponding 1 H NMR, 13C NMR, 19F NMR, and HRMS spectrograms are also presented in the Supporting Information.
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Sun, S., Yan, J., Tai, L. et al. Novel (Z)/(E)-1,2,4-triazole derivatives containing oxime ether moiety as potential ergosterol biosynthesis inhibitors: design, preparation, antifungal evaluation, and molecular docking. Mol Divers 27, 145–157 (2023). https://doi.org/10.1007/s11030-022-10412-w
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DOI: https://doi.org/10.1007/s11030-022-10412-w