Skip to main content

Analysis of Histone Posttranslational Modifications in the Control of Chromatin Plasticity Observed at Estrogen-Responsive Sites in Human Breast Cancer Cells

  • Protocol
  • First Online:
Steroid Receptors

Part of the book series: Methods in Molecular Biology ((MIMB,volume 1204))

Abstract

It is well established that histone posttranslational modifications mediate the control of gene expression played by chromatin. Such modifications are commonly reversible and many alternatives are open to drive transcription of inducible genes.

Estrogens govern growth and survival of hormone-sensitive cells by inducing expression of genes important for cell cycle progression and apoptosis. Transcription of estrogen-responsive genes is triggered by the lysine-specific demethylase 1 (LSD1)-dependent demethylation of dimethylated lysine 9 in histone H3 (H3K9me2) that accompanies to local generation of oxygen reactive species (ROS). Production of ROS modifies guanines in neighbor DNA with consequent recruitment of base-excision repair (BER) enzymes and formation of breaks that support creation of bridges between sites that, although distant on linear DNA, establish strategic contacts useful for productive transcription.

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Subscribe and save

Springer+ Basic
$34.99 /Month
  • Get 10 units per month
  • Download Article/Chapter or eBook
  • 1 Unit = 1 Article or 1 Chapter
  • Cancel anytime
Subscribe now

Buy Now

Protocol
USD 49.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD 84.99
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD 109.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info
Hardcover Book
USD 109.99
Price excludes VAT (USA)
  • Durable hardcover edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

Similar content being viewed by others

References

  1. Strahl BD, Allis CD (2000) The language of covalent histone modifications. Nature 403:41–45

    Article  CAS  Google Scholar 

  2. Mangelsdorf DJ et al (1995) The nuclear receptor superfamily: the second decade. Cell 83:835–839

    Article  CAS  Google Scholar 

  3. Cosma MP (2002) Ordered recruitment: gene-specific mechanism of transcription activation. Mol Cell 10:227–236

    Article  CAS  Google Scholar 

  4. Jenuwein T, Allis CD (2001) Translating the histone code. Science 293:1074–1080

    Article  CAS  Google Scholar 

  5. Perissi V, Rosenfeld MG (2005) Controlling nuclear receptors: the circular logic of cofactor cycles. Nat Rev Mol Cell Bio 6:542–554

    Article  CAS  Google Scholar 

  6. Park KJ et al (2005) Formation of an IKKa-dependent transcription complex is required for estrogen receptor-mediated gene activation. Mol Cell 18:71–82

    Article  CAS  Google Scholar 

  7. Peters AH et al (2003) Partitioning and plasticity of repressive histone methylation states in mammalian chromatin. Mol Cell 12:1577–1589

    Article  CAS  Google Scholar 

  8. Shang Y et al (2000) Cofactor dynamics and sufficiency in estrogen receptor-regulated transcription. Cell 103:843–852

    Article  CAS  Google Scholar 

  9. Metivier R et al (2003) Estrogen receptor-a directs ordered, cyclical, and combinatorial recruitment of cofactors on a natural target promoter. Cell 115:751–763

    Article  CAS  Google Scholar 

  10. Perillo B et al (2008) DNA oxidation as triggered by H3K9me2 demethylation drives estrogen-induced gene expression. Science 319:202–206

    Article  CAS  Google Scholar 

  11. Abbondanza C et al (2011) Highlighting chromosome loops in DNA-picked chromatin (DPC). Epigenetics 6:979–986

    Article  CAS  Google Scholar 

  12. Cook PR (1999) Organization of replication and transcription. Science 284:1790–1795

    Article  CAS  Google Scholar 

  13. Dejardin J, Kingston RE (2009) Purification of proteins associated with specific genomic loci. Cell 136:175–186

    Article  CAS  Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Bruno Perillo .

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 2014 Springer Science+Business Media New York

About this protocol

Cite this protocol

Di Santi, A., Cernera, G., Migliaccio, A., Perillo, B. (2014). Analysis of Histone Posttranslational Modifications in the Control of Chromatin Plasticity Observed at Estrogen-Responsive Sites in Human Breast Cancer Cells. In: Castoria, G., Auricchio, F. (eds) Steroid Receptors. Methods in Molecular Biology, vol 1204. Humana, New York, NY. https://doi.org/10.1007/978-1-4939-1346-6_6

Download citation

  • DOI: https://doi.org/10.1007/978-1-4939-1346-6_6

  • Published:

  • Publisher Name: Humana, New York, NY

  • Print ISBN: 978-1-4939-1345-9

  • Online ISBN: 978-1-4939-1346-6

  • eBook Packages: Springer Protocols

Publish with us

Policies and ethics