Abstract
Double-stranded RNA (dsRNA) is the replicate intermediate of all RNA viruses, and is also recognized by their host cells as a virus-invading molecule signal. Analysis of the localization and dynamic of virus-induced dsRNA can reveal crucial information concerning the molecular mechanism of virus replication and host responses to viral infection. In this chapter, we provide an easy and efficient protocol called dsRNA binding-dependent fluorescence complementation (dRBFC) assay for labeling the dsRNAs in living plant cells using two different plant RNA viruses, namely potato virus X and turnip mosaic virus. Moreover, both YFP- and mRFP-based dRBFC plasmids are available for the flexibility of experiment design.
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References
Chen YG, Hur S (2022) Cellular origins of dsRNA, their recognition and consequences. Nat Rev Mol Cell Biol 23(4):286–301
Sijen T et al (2001) On the role of RNA amplification in dsRNA-triggered gene silencing. Cell 107(4):465–476
Rosok O, Sioud M (2004) Systematic identification of sense-antisense transcripts in mammalian cells. Nat Biotechnol 22(1):104–108
Dewitte-Orr SJ, Mossman KL (2011) The antiviral effects of extracellular dsRNA. In: Mossman KL (ed) Viruses and interferon: current research. Caister Academic Press, Norfolk, pp 1–18
Plasterk RHA (2002) RNA silencing: the genome’s immune system. Science 296(5571):1263–1265
Peisley A, Hur S (2013) Multi-level regulation of cellular recognition of viral dsRNA. Cell Mol Life Sci 70:1949–1963
Jacobs BL, Langland JO (1996) When two strands are better than one: the mediators and modulators of the cellular responses to double-stranded RNA. Virology 219(2):339–349
Triantafilou K et al (2012) Visualisation of direct interaction of MDA5 and the dsRNA replicative intermediate form of positive strand RNA viruses. J Cell Sci 125(Pt 20):4761–4769
Son K-N, Liang Z, Lipton HL (2015) Double-strand RNA is detected by immunofluorescence analysis in RNA and DNA virus infections including those by negative-strand RNA viruses. J Virol 89
Ishibashi K et al (2019) Soybean antiviral immunity conferred by dsRNase targets the viral replication complex. Nat Commun 10(1):4033
Cuellar WJ et al (2009) Elimination of antiviral defense by viral RNase III. Proc Natl Acad Sci 106(25):10354–10358
Cheng X et al (2015) Visualizing double-stranded RNA distribution and dynamics in living cells by dsRNA binding-dependent fluorescence complementation. Virology 485:439–451
Wu X et al (2019) The Potato virus X TGBp2 protein plays dual functional roles in viral replication and movement. J Virol 93(5):e01635–e01618
Chapman S, Kavanagh T, Baulcombe D (1992) Potato virus X as a vector for gene expression in plants. Plant J 2(4):549–557
Acknowledgments
This work was supported by grants from the National Natural Science Foundation of China (32022071) to XC.
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Zhang, Y., Fan, X., Cheng, X. (2024). Analysis of Virus-Induced Double-Stranded RNA in Living Plant Cells by the dRBFC Assay. In: Cheng, X., Wu, G. (eds) Double-Stranded RNA. Methods in Molecular Biology, vol 2771. Humana, New York, NY. https://doi.org/10.1007/978-1-0716-3702-9_5
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DOI: https://doi.org/10.1007/978-1-0716-3702-9_5
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Publisher Name: Humana, New York, NY
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Online ISBN: 978-1-0716-3702-9
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