Using T4 DNA Polymerase to Generate Clonable PCR Products

Abstract

Polymerase chain reaction (PCR) mediated through Taq DNA polymerase has become a simple and routine method for cloning, sequencing, and analyzing genetic information from very small amount of materials (1). Taq DNA polymerase, like some other DNA polymerases, lacks 3′ to 5′ exonuclease activity and will add nontemplate-directed nucleotides to the ends of double-stranded DNA fragments (2). Because of the strong preference of the Taq polymerase for deoxyadenosine s’triphosphate (dATP), the nucleotide added is almost exclusively an adenosine. This results in generating “ragged” unclonable amplification products (3). Restriction endonuclease sites are often incorporated into the amplification primers so that clonable PCR products can be generated by restriction enzyme cleavage (4). However, the possible secondary sites located within the amplified products often complicate the cloning and interpretation of PCR results. A cloning system exploiting the template-independent terminal transferase activity of Taq polymerase has been developed (5-7). However, a special vector with thymidine (T) overhanging ends has to be used in the process.