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Methylation-Specific PCR

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PCR Cloning Protocols

Part of the book series: Methods in Molecular Biology™ ((MIMB,volume 192))

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Abstract

Methylation of the DNA is an important epigenetic (i.e., not associated with alteration in the primary structure of the DNA) phenomenon, which plays important roles in regulation of gene expression, maintenance of genome integrity, and genomic imprinting. Although not only other nucleotides, but also proteins and lipids can be methylated, in the context of the present discussion, “methylation” designates only that of cytosine residues that are located 5′ to guanines (CpG cytosines). A methyl residue is added to the 5 position of the pyrimidine ring of cytosine (5-methylcytosine) in the course of DNA replication, a process mediated by DNA(cytosine-5)-methyltransferases.

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References

  1. Frommer, M., McDonald, L. E., Miller, D. S., Collis, C. M., Watt, F., Grigg, G. W., Molloy, P. L., and Paul, C. L. (1992) A genomic sequencing protocol that yields a positive display of 5-methylcytosine residues in individual DNA strands. Proc. Natl. Acad. Sci. USA 89, 1827–1831.

    Article  CAS  PubMed  Google Scholar 

  2. Herman, J. G., Graff, J. R., Myohanen, S., Nelkin, B. D., and Baylin, S. B. (1996) Methy-lation-specific PCR: A novel PCR assay for methylation status of CpG islands. Proc. Natl. Acad. Sci. USA 93, 9821–9826.

    Article  CAS  PubMed  Google Scholar 

  3. Herman, J. G., Civin, C. I., Issa, J. P., Collector, M. I., Sharkis, S. J., and Baylin, S. B. (1997) Distinct patterns of inactivation of p15INK4B and p16INK4A characterize the major types of hematological malignancies. Cancer Res. 57, 837–841.

    CAS  PubMed  Google Scholar 

  4. Tao, Q., Swinnen, L. J., Yang, J., Strivastava, G., Robertson, K. D., Ambinder, R. F. (1999) Methylation status of the Epstein-Barr virus major latent promoter C in iatrogenic B cell lymphoproliferative disease. Application of PCR-based analysis. Am. J. Pathol. 155, 619–625.

    Article  CAS  PubMed  Google Scholar 

  5. Uchida, T., Ohashi, H., Aoki, E., Nakahara, Y., Hotta, T., Murate, T., Saito, H., and Kinoshita, T. (2000) Clonality analysis by methylation-specific PCR for the human andro-gen-receptor gene (HUMARA-MSP). Leukemia 14, 207–212.

    Article  CAS  PubMed  Google Scholar 

  6. Kubota, T., Das, S., Christian, S. L., Baylin, S. B., Herman, J. G., Ledbetter, D. H. (1997) Methylation-specific PCR simplifies imprinting analysis. Nature Genet. 16, 16–17.

    CAS  PubMed  Google Scholar 

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© 2002 Humana Press Inc.

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Ohashi, H. (2002). Methylation-Specific PCR. In: Chen, BY., Janes, H.W. (eds) PCR Cloning Protocols. Methods in Molecular Biology™, vol 192. Humana Press. https://doi.org/10.1385/1-59259-177-9:091

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  • DOI: https://doi.org/10.1385/1-59259-177-9:091

  • Publisher Name: Humana Press

  • Print ISBN: 978-0-89603-969-8

  • Online ISBN: 978-1-59259-177-0

  • eBook Packages: Springer Protocols

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