Abstract
Degradation of apoptotic cells is finalized during the phagocytic waste-management phase of apoptosis. This eliminates genetic material present in dying cells which often contain pathological, viral, or cancerous DNA. In the waste-management phase, chromatin of apoptotic cells is engulfed and digested by professional phagocytes or surrounding tissue cells. This process is critical for the efficient completion of apoptosis and its detection is necessary in research on cancer and autoimmune diseases where clearance of dying cells plays the central role. Here we present a rapid and simple fluorescence technique for visualization of phagocytic cells participating in waste management. The detailed step-by-step protocol is provided. The approach works in fixed tissue sections and labels all types of active phagocytic cells which engulf and digest apoptotic chromatin.
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References
Kerr JF, Wyllie AH, Currie AR (1972) Apoptosis: a basic biological phenomenon with wide-ranging implications in tissue kinetics. Br J Cancer 26:239–257
Didenko VV, Hornsby PJ (1996) Presence of double-strand breaks with single-base 3’ overhangs in cells undergoing apoptosis but not necrosis. J Cell Biol 135:1369–1376
Staley K, Blaschke AJ, Chun J (1997) Apoptotic DNA fragmentation is detected by a semi-quantitative ligation-mediated PCR of blunt DNA ends. Cell Death Differ 4:66–75
Samejima K, Earnshaw WC (2005) Trashing the genome: role of nucleases during apoptosis. Nat Rev Mol Cell Biol 6:677–688
Krieser RJ, MacLea KS, Longnecker DS et al (2002) Deoxyribonuclease IIα is required during the phagocytic phase of apoptosis and loss causes perinatal lethality. Cell Death Differ 9:956–962
Kroemer G, Galluzzi L, Vandenabeele P et al (2009) Classification of cell death: recommendations of the Nomenclature Committee on Cell Death. Cell Death Differ 16:3–11
Litvack ML, Palaniyar N (2010) Review: soluble innate immune pattern-recognition proteins for clearing dying cells and cellular components: implications on exacerbating or resolving inflammation. Innate Immun 16:191–200
Green DR, Ferguson T, Zitvogel L, Kroemer G (2009) Immunogenic and tolerogenic cell death. Nat Rev Immunol 9:353–363
Nagata S, Nagase H, Kawane K et al (2003) Degradation of chromosomal DNA during apoptosis. Cell Death Differ 10:108–116
Parrish JZ, Xue D (2006) Cuts can kill: the roles of apoptotic nucleases in cell death and animal development. Chromosoma 115:89–97
Weir AF (1993) Deoxyribonuclease I (EC 3.1.21.1) and II (EC 3.1.22.1). Methods Mol Biol 16:7–16
Didenko VV (2011) 5'OH DNA breaks in apoptosis and their labeling by topoisomerase-based approach. Methods Mol Biol 682:77–87
Didenko VV (ed) (2011) DNA damage detection in situ, ex vivo, and in vivo: methods and protocols, vol 682, Methods in Molecular Biology. Humana Press, New York, NY, p 314 p
Minchew CL, Didenko VV (2011) Fluorescent probes detecting the phagocytic phase of apoptosis: enzyme-substrate complexes of topoisomerase and DNA. Molecules 16:4599–4614
Shuman S (1998) Vaccinia virus DNA topoisomerase: a model eukaryotic type IB enzyme. Biochim Biophys Acta 1400:321–337
Shuman S (1991) Site-specific interaction of vaccinia virus topoisomerase I with duplex DNA. J Biol Chem 266:11372–11379
Shuman S (1991) Site-specific cleavage by vaccinia virus DNA topoisomerase I. J Biol Chem 266:1796–1803
Shuman S (1992) Two classes of DNA end-joining reactions catalyzed by vaccinia topoisomerase I. J Biol Chem 267:16755–16758
Sweeney PJ, Walker JM (1993) Proteinase K (EC 3.4.21.14). Methods Mol Biol 16:305–311
Acknowledgements
This research was supported by grant R01 NS062842 from the National Institute of Neurological Disorders and Stroke, National Institutes of Health, and by grants R21 NS064403 from the National Institute of Neurological Disorders and Stroke, National Institutes of Health, through ARRA, and R21 EB006301 National Institute of Biomedical Imaging and Bioengineering, National Institutes of Health.
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Didenko, V.V. (2014). Selective Detection of Phagocytic Phase of Apoptosis in Fixed Tissue Sections. In: Stockert, J., Espada, J., Blázquez-Castro, A. (eds) Functional Analysis of DNA and Chromatin. Methods in Molecular Biology, vol 1094. Humana Press, Totowa, NJ. https://doi.org/10.1007/978-1-62703-706-8_13
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DOI: https://doi.org/10.1007/978-1-62703-706-8_13
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Publisher Name: Humana Press, Totowa, NJ
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