Skip to main content

Specific RNA Collection from the Rat Endolymphatic Sac by Laser-Capture Microdissection (LCM): LCM of a Very Small Organ Surrounded by Bony Tissues

  • Protocol
  • First Online:
Laser Capture Microdissection

Part of the book series: Methods in Molecular Biology ((MIMB,volume 755))

Abstract

Laser-capture microdissection (LCM) is an excellent tool to selectively obtain target tissue or cells. The endolymphatic sac (ES) is part of the inner ear, and a large part of the ES is located in the temporal bone. The rat ES is conventionally harvested using stereomicroscopy. In this method, contamination is unavoidable because of its size and location; therefore, additional checks, such as in situ hybridization, are necessary to confirm the cellular localization, and quantitative analysis is difficult in the ES. We have shown a selective epithelial tissue method using LCM to obtain RNA without contamination from ES epithelial tissue.

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Subscribe and save

Springer+ Basic
$34.99 /Month
  • Get 10 units per month
  • Download Article/Chapter or eBook
  • 1 Unit = 1 Article or 1 Chapter
  • Cancel anytime
Subscribe now

Buy Now

Protocol
USD 49.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD 89.00
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD 119.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info
Hardcover Book
USD 169.99
Price excludes VAT (USA)
  • Durable hardcover edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

Similar content being viewed by others

References

  1. Dahlmann A., von During M. (1995) The endolymphatic duct and sac of the rat: A histological, ultrastructural, and immunocytochemical investigation, Cell Tissue Res. 282: 277–289.

    Article  CAS  Google Scholar 

  2. Lo W. W., Daniels D. L., Chakeres D. W et al (1997) The endolymphatic duct and sac, AJNR Am. J. Neuroradiol. 18: 881–887.

    Google Scholar 

  3. R.S. Kimura. (1967) Experimental blockage of the endolymphatic duct and sac and its effect on the inner ear of the guinea pig. A study on endolymphatic hydrops, Ann. Otol. Rhinol. Laryngol. 76: 664–687.

    CAS  Google Scholar 

  4. R.S. Kimura. (1982) Animal models of endolymphatic hydrops, Am. J. Otolaryngol. 3: 447–451.

    Article  CAS  Google Scholar 

  5. Miyashita T., Tatsumi H., Hayakawa K. et al (2007) Large Na(+) influx and high Na(+), K (+)-ATPase activity in mitochondria-rich epithelial cells of the inner ear endolymphatic sac. Pflugers Arch. 453: 905–13.

    Article  CAS  Google Scholar 

  6. Furuta H., Sato C., Kawaguchi Y et al (1999) Expression of mRNAs encoding hormone receptors in the endolymphatic sac of the rat, Acta Otolaryngol. 119: 53–57.

    Article  CAS  Google Scholar 

  7. Sawada S., Takeda T., Kitano H et al (2002) Aquaporin-2 regulation by vasopressin in the rat inner ear, Neuroreport 13: 1127–1129.

    Article  CAS  Google Scholar 

  8. Murray G. I. (2007) An overview of laser microdissection technologies, acta histochmica. 109: 171–176.

    Google Scholar 

  9. Akiyama K., Miyashita T., Mori T et al (2008) A new approach for selective rat endolymphatic sac epithelium collection to obtain pure specific RNA, Biochem. Biophys. Res. Commun. 376: 611–614.

    Article  CAS  Google Scholar 

  10. Yoon K. G., Rutledge S. J., Buenaga R. F et al (1988) Characterization of the rat osteocalcin gene: Stimu-lation of promoter activity by 1,25-dihydroxyvitamin D3, Biochemistry 27: 8521–8526.

    Google Scholar 

  11. Nishida W., Kitami Y., Hiwada H (1993) cDNA cloning and mRNA expression of calponin and SM22 in rat aorta smooth muscle cells, Gene 130: 297–302.

    Article  CAS  Google Scholar 

  12. Gamba G., Miyanoshita A., Lombardi M et al (1994) Molecular cloning, primary structure, and characterization of two members of the mammalian electroneutral sodium-(potassium)-chloride cotransporter family expressed in kidney, J. Biol. Chem. 269: 17713–17722.

    CAS  Google Scholar 

Download references

Acknowledgments

This work was supported in part by Grants-in-Aid for Scientific Research (#13671783 and #16591711 to N.M., #16791003 and #791208 to T.M.).

An outline of this work was published in ref. 9 and is reproduced with permission from Elsevier Science.

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Kosuke Akiyama .

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 2011 Springer Science+Business Media, LLC

About this protocol

Cite this protocol

Akiyama, K., Miyashita, T., Matsubara, A., Mori, N. (2011). Specific RNA Collection from the Rat Endolymphatic Sac by Laser-Capture Microdissection (LCM): LCM of a Very Small Organ Surrounded by Bony Tissues. In: Murray, G. (eds) Laser Capture Microdissection. Methods in Molecular Biology, vol 755. Humana Press. https://doi.org/10.1007/978-1-61779-163-5_37

Download citation

  • DOI: https://doi.org/10.1007/978-1-61779-163-5_37

  • Published:

  • Publisher Name: Humana Press

  • Print ISBN: 978-1-61779-162-8

  • Online ISBN: 978-1-61779-163-5

  • eBook Packages: Springer Protocols

Publish with us

Policies and ethics