Skip to main content

Long-Range PCR with a DNA Polymerase Fusion

  • Protocol
  • First Online:
PCR Protocols

Part of the book series: Methods in Molecular Biology ((MIMB,volume 687))

Abstract

Proofreading DNA polymerase fusions offer several advantages for long-range PCR, including faster run times and higher fidelity compared with Taq-based enzymes. However, their use so far has been limited to amplification of small to mid-range targets. In this article, we present a modified protocol for using a DNA polymerase fusion to amplify genomic targets exceeding 20 kb in length. This procedure overcomes several limitations of Taq blends, which up until recently, were the only option for long-range PCR. With a proofreading DNA polymerase fusion, high-molecular-weight amplicon can be generated and analyzed in a single day, and a significant proportion is expected to be error-free.

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Subscribe and save

Springer+ Basic
$34.99 /Month
  • Get 10 units per month
  • Download Article/Chapter or eBook
  • 1 Unit = 1 Article or 1 Chapter
  • Cancel anytime
Subscribe now

Buy Now

Protocol
USD 49.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD 84.99
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD 159.00
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info
Hardcover Book
USD 109.99
Price excludes VAT (USA)
  • Durable hardcover edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

Similar content being viewed by others

References

  1. Barnes, W.M. (1994) PCR amplification of up to 35-kb DNA with high fidelity and high yield from λ bacteriophage templates. Proc. Natl. Acad. Sci. USA 91, 2216–20.

    Article  PubMed  CAS  Google Scholar 

  2. Wang, Y., Prosen, D.E., Mei, L., Sullivan, J.C., Finney, M., and Vander Horn, P.B. (2004) A novel strategy to engineer DNA polymerases for enhanced processivity and improved performance in vitro. Nucleic Acids Res. 32, 1197–207.

    Article  PubMed  CAS  Google Scholar 

  3. Hogrefe, H.H., Cline, J., Lovejoy, A., and Nielson, K.B. (2001) DNA Polymerases from Hyperthermophiles. Methods Enzymol. 343, 91–116.

    Article  Google Scholar 

  4. (2006) Herculase II fusion DNA polymerase product literature. Strateg. Newsl. 19, 4–5, 34–35.

    Google Scholar 

  5. Hogrefe, H.H. and Borns, M.C. (2003) High Fidelity PCR Enzymes, PCR Primer, Dieffenbach, C.W., and Dveksler, G.S., eds., Cold Spring Harbor Laboratory Press, Plainview, NY.

    Google Scholar 

  6. Borns, M. and Hogrefe, H. (2000) Unique DNA polymerase formulation excels in a broad range of PCR applications. Strateg. Newsl. 13, 1–3.

    Google Scholar 

  7. Hogrefe, H.H., Hansen, C.J., Scott, B.R., and Nielson, K.B. (2002) Archaeal dUTPase enhances PCR amplifications with archaeal DNA polymerases by preventing dUTP incorporation. Proc. Natl. Acad. Sci. USA 99, 596–601.

    Article  PubMed  CAS  Google Scholar 

  8. Greagg, M.A., Fogg, M.J., Panayotou, G., Evans, S.J., Connolly, B.A., and Pearl, L.H. (1999) A read-ahead function in archaeal DNA polymerases detects promutagenic template-strand uracil. Proc. Natl. Acad. Sci. USA 96, 9045–50.

    Article  PubMed  CAS  Google Scholar 

  9. Arezi, B., Xing, W., Sorge, J.A., and Hogrefe, H.H. (2003) Amplification efficiency of thermostable DNA polymerases. Anal. Biochem. 321, 226–35.

    Article  PubMed  CAS  Google Scholar 

  10. Maniatis, T., Fritsch, E.F., and Sambrook, J. (eds.) (1982) Molecular Cloning: A Laboratory Manual. Cold Spring Harbor Laboratory. Cold Spring Harbor, NY.

    Google Scholar 

  11. Cline, J., Braman, J.C., and Hogrefe, H.H. (1996) PCR fidelity of Pfu DNA polymerase and other thermostable DNA polymerases. Nucleic Acids Res. 24, 3546–51.

    Article  PubMed  CAS  Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 2011 Humana Press

About this protocol

Cite this protocol

Hogrefe, H.H., Borns, M.C. (2011). Long-Range PCR with a DNA Polymerase Fusion. In: Park, D. (eds) PCR Protocols. Methods in Molecular Biology, vol 687. Humana Press. https://doi.org/10.1007/978-1-60761-944-4_2

Download citation

  • DOI: https://doi.org/10.1007/978-1-60761-944-4_2

  • Published:

  • Publisher Name: Humana Press

  • Print ISBN: 978-1-60761-943-7

  • Online ISBN: 978-1-60761-944-4

  • eBook Packages: Springer Protocols

Publish with us

Policies and ethics