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1H NMR Metabolomic Profiling of Human and Animal Blood Serum Samples

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Multiplex Biomarker Techniques

Part of the book series: Methods in Molecular Biology ((MIMB,volume 1546))

Abstract

Nuclear magnetic resonance (NMR) spectroscopy techniques allow the acquisition of a large amount of data and when combined with multivariate statistical analysis, it is possible to process and interpret the obtained NMR data in accordance with the biological problem being investigated. In this chapter, the search for biologically relevant biomarkers is addressed using NMR spectroscopy-based metabolomics, due to their clinical relevance for either diagnosis or monitoring of diseases and disorders.

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References

  1. Horgan RP, Kenny LC (2011) ‘Omic’ technologies: genomics, transcriptomics, proteomics and metabolomics. Obstet Gynecol 13:189–195

    Article  Google Scholar 

  2. Bonne NJ, Wong DTW (2012) Salivary biomarker development using genomic, proteomic and metabolomic approaches. Genome Med 4:82. doi:10.1186/gm383

    Article  PubMed  PubMed Central  Google Scholar 

  3. Kovac JR, Pastuszak AW, Lamb DJ (2013) The use of genomics, proteomics, and metabolomics in identifying biomarkers of male infertility. Fertil Steril 99:998–1007

    Article  CAS  Google Scholar 

  4. Oliver SG, Winson MK, Kell DB, Baganz F (1998) Systematic functional analysis of the yeast genome. Trends Biotechnol 16:373–378

    Article  CAS  Google Scholar 

  5. Fiehn O (2002) Metabolomics – the link between genotypes and phenotypes. Plant Mol Biol 48:155–171

    Article  CAS  Google Scholar 

  6. Villas-Bôas SG, Rasmussen S, Lane GA (2005) Metabolomics or metabolite profiles? Trends Biotechnol 23:385–386

    Article  Google Scholar 

  7. Pinto J, Domingues MRM, Galhano E, Pita C, Almeida MC, Carreira IM et al (2014) Human plasma stability during handling and storage: impact on NMR metabolomics. Analyst 139:1168–1177

    Article  CAS  Google Scholar 

  8. Emwas AHM, Salek RM, Griffin JL, Merzaban J (2013) NMR-based metabolomics in human disease diagnosis: applications, limitations, and recommendations. Metabolomics 9:1048–1072

    Article  CAS  Google Scholar 

  9. Bharti SK, Roy R (2012) Quantitative 1H NMR spectroscopy. TrAC Trend Anal Chem 35:5–26

    Article  CAS  Google Scholar 

  10. Fourier JBJ (1822) Théorie Analytique de la Chaleur. Paris: Chez Firmin Didot, père et fils, p. 525

    Google Scholar 

  11. Wold S (1987) Principal component analysis. Chemom Intell Lab 2:37–52

    Article  CAS  Google Scholar 

  12. Wold S, Sjöström M, Eriksson L (2001) PLS-regression: a basic tool of chemometrics. Chemom Intell Lab 58:109–130

    Article  CAS  Google Scholar 

  13. Trygg J, Holmes E, Lundstedt T (2007) Chemometrics in metabonomics. J Proteome Res 6:469–479

    Article  CAS  Google Scholar 

  14. Verwaest KA, Vu TN, Laukens KA, Clemens LE, Nguyen HP, Gasse BV et al (2011) 1H NMR based metabolomics of CSF and blood serum: a metabolic profile for a transgenic rat model of Huntington disease. Biochim Biophys Acta 1812:1371–1379

    Article  CAS  Google Scholar 

  15. Piotto M, Saudek V, Sklenár V (1992) Gradient-tailored excitation for single-quantum NMR spectroscopy of aqueous solutions. J Biomol NMR 2:661–665

    Article  CAS  Google Scholar 

  16. Debruyne M, Engelen S, Hubert M, Rousseeuw PJ (2006) Robustness and outlier detection in chemometrics. Crit Rev Anal Chem 36:221–242

    Article  Google Scholar 

  17. Teahan O, Gamble S, Holmes E, Waxman J, Nicholson JK, Bevan C et al (2006) Impact of analytical bias in metabonomic studies of human blood serum and plasma. Anal Chem 78:4307–4318

    Article  CAS  Google Scholar 

  18. Yin P, Lehmann R, Xu G (2015) Effects of pre-analytical processes on blood samples used in metabolomics studies. Anal Bioanal Chem 407:4879–4892

    Article  CAS  Google Scholar 

  19. Beckonert O, Keun HC, Ebbels TMD, Bundy J, Holmes E, Lindon JC et al (2007) Metabolic profiling, metabolomic and metabonomic procedures for NMR spectroscopy of urine, plasma, serum and tissue extracts. Nat Protoc 2:2692–2703

    Article  CAS  Google Scholar 

  20. Parab GS, Rao R, Lakshminarayanan S, Bing YV, Moochhala SM, Swarup S (2009) Data-driven optimization of metabolomics methods using rat liver samples. Anal Chem 81:1315–1323

    CAS  PubMed  Google Scholar 

  21. Zheng P, Gao HC, Li Q, Shao WH, Zhang ML, Cheng K et al (2012) Plasma metabonomics as a novel diagnostic approach for major depressive disorder. J Proteome Res 11:1741–1748

    CAS  PubMed  Google Scholar 

  22. Rankin NJ, Preiss D, Welsh P, Burgess KEV, Nelson SM, Lawlor DA et al (2014) The emergence of proton nuclear magnetic resonance metabolomics in the cardiovascular arena as viewed from a clinical perspective. Atherosclerosis 237:287–300

    CAS  PubMed  PubMed Central  Google Scholar 

  23. Adams RW, Holroyd CM, Aguilar JA, Nilsson M, Morris GA (2013) “Perfecting” WATERGATE: clean proton NMR spectra from aqueous solution. Chem Commun 49:358–360

    CAS  Google Scholar 

  24. Tang H, Wang Y (2008) High-resolution NMR spectroscopy in human metabolism and metabonomics. In: Webb GA (ed) Modern magnetic resonance – Part III: Applications in materials science and food science. Springer, New York, pp 1623–1630

    Google Scholar 

  25. Wevers RA, Engelke U, Heershap A (1994) High-resolution 1H NMR spectroscopy of blood plasma for metabolic studies. Clin Chem 40:1245–1250

    CAS  PubMed  Google Scholar 

  26. Meiboom S, Gill D (1958) Modified spin-echo method for measuring nuclear relaxation times. Rev Sci Instrum 29:688–691

    CAS  Google Scholar 

  27. Smolińska A (2012) Chemometrics and NMR spectroscopy for metabolomics analysis of neurological disorders. Radboud University, Nijmegen. ISBN 978-94-6191-358-6

    Google Scholar 

  28. Gebregiworgis T, Powers R (2012) Application of NMR metabolomics to search for human disease biomarkers. Com Chem High T Scr 15:595–610

    CAS  Google Scholar 

Download references

Acknowledgments

We thank the Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP, São Paulo, Brazil) and Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq, Brasília, Brazil) for financial supports (FAPESP Process No 2014/18938-8 and CNPq Process Number: 454234/2014-7) and fellowships.

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Correspondence to Ljubica Tasic .

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Pontes, J.G.M., Brasil, A.J.M., Cruz, G.C.F., de Souza, R.N., Tasic, L. (2017). 1H NMR Metabolomic Profiling of Human and Animal Blood Serum Samples. In: Guest, P.C. (eds) Multiplex Biomarker Techniques. Methods in Molecular Biology, vol 1546. Humana, New York, NY. https://doi.org/10.1007/978-1-4939-6730-8_24

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  • DOI: https://doi.org/10.1007/978-1-4939-6730-8_24

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  • Publisher Name: Humana, New York, NY

  • Print ISBN: 978-1-4939-6729-2

  • Online ISBN: 978-1-4939-6730-8

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