Abstract
Pattern-triggered immunity is the first line of defense against infection by pathogens such as bacteria and fungi in plants, and this mechanism remains poorly defined in plant viruses. Double-stranded RNA (dsRNA) is an intermediate in the replication of plant RNA viruses, and is considered to be a conserved structure of plant viruses similar to pathogen-associated molecular pattern. Whether dsRNA is the elicitor that activates plant immunity in response to virus infection remains obscure. In this method, we use the cDNA of turnip mosaic virus genome as the template to in vitro synthesis of viral dsRNA and examine whether viral dsRNA could activate plant immunity in Arabidopsis thaliana, including MAPK kinase cascade and reactive oxygen burst. In order to provide some references for researchers studying dsRNA in terms of research methodology and experimental methods, we use western blot to measure MAPK kinase cascade and luminol-based assay to measure ROS burst in Arabidopsis thaliana treated by viral dsRNA.
Access this chapter
Tax calculation will be finalised at checkout
Purchases are for personal use only
Similar content being viewed by others
References
Couto D, Zipfel C (2016) Regulation of pattern recognition receptor signalling in plants. Nat Rev Immunol 16:537–552
Boller T, Felix G (2009) A renaissance of elicitors: perception of microbe-associated molecular patterns and danger signals by pattern-recognition receptors. Annu Rev Plant Biol 60:379–406
Jones JDG, Dangl JL (2006) The plant immune system. Nature 444:323–329
Amari K, Niehl A (2020) Nucleic acid-mediated PAMP-triggered immunity in plants. Curr Opin Virol 42:32–39
DeFalco TA, Zipfel C (2021) Molecular mechanisms of early plant pattern-triggered immune signaling. Mol Cell 81:3449–3467
Abdul Malik AN, Kumar SI, Nadarajah K (2020) Elicitor and receptor molecules: orchestrators of plant defense and immunity. Int J Mol Sci 21:963
Manosalva P, Manohar M, Von Reuss SH et al (2011) Conserved nematode signalling molecules elicit plant defenses and pathogen resistance. Nat Commun 6:7795
Kørner CJ, Klauser D, Niehl A et al (2013) The immunity regulator BAK1 contributes to resistance against diverse RNA viruses. Mol Plant Microbe In 26:1271–1280
Zorzatto C, Machado JPB, Lopes KVG et al (2015) NIK1-mediated translation suppression functions as a plant antiviral immunity mechanism. Nature 520:679–682
Paude DB, Sanfaçon H (2018) Exploring the diversity of mechanisms associated with plant tolerance to virus infection. Fron Plant Sci 9:1575
Pumplin N, Voinnet O (2013) RNA silencing suppression by plant pathogens: defence, counter-defence and counter-counter-defence. Nat Rev Microbiol 11:745–760
Ramesh SV, Sahu PP, Prasad M et al (2017) Geminiviruses and plant hosts: A closer examination of the molecular arms race. Viruses 9:256
Chow KT, Gale MJ, Loo YM (2018) RIG-I and other RNA sensors in antiviral immunity. Annu Rev Immunol 36:667–694
Vabret N, Bhardwaj N, Greenbaum BD (2017) Sequence-specific sensing of nucleic acids. Trends Immunol 38:53–65
Lee B, Park YS, Lee S et al (2016) Bacterial RNAs activate innate immunity in Arabidopsis. New Phytol 209:785–797
Niehl A, Wyrsch I, Boller T et al (2016) Double-stranded RNAs induce a pattern-triggered immune signaling pathway in plants. New Phytol 211:1008–1019
Huang CP, Sede A, Elvira-González L et al (2023) DsRNA-induced immunity targets plasmodesmata and is suppressed by viral movement proteins. Plant Cell. https://doi.org/10.1093/plcell/koad176
Nellist CF, Ohshima K, Ponz F et al (2022) Turnip mosaic virus, a virus for all seasons. Ann Appl Biol 180:312–327
Voloudakis AE, Holeva MC, Sarin LP et al (2015) Efficient double-stranded RNA production methods for utilization in plant virus control. Methods Mol Biol 1236:255–274
Wu GW, Jia ZX, Ding KD et al (2022) Turnip mosaic virus co-opts the vacuolar sorting receptor VSR4 to promote viral genome replication in plants by targeting viral replication vesicles to the endosome. PLoS Pathog 18:e1010257
Acknowledgments
This research is funded by grants from the National Natural Science Foundation of China (3207016) to GW, the China Agriculture Research System of MOF and MARA (CARS-24-C-04) to FY, and the K. C. Wong Magna Fund in Ningbo University.
Author information
Authors and Affiliations
Corresponding authors
Editor information
Editors and Affiliations
Rights and permissions
Copyright information
© 2024 The Author(s), under exclusive license to Springer Science+Business Media, LLC, part of Springer Nature
About this protocol
Cite this protocol
Rui, P., Chen, J., Yan, F., Wu, G. (2024). Analysis of Plant Virus-Induced Immunity by Using Viral-Derived Double-Stranded RNA in Arabidopsis thaliana. In: Cheng, X., Wu, G. (eds) Double-Stranded RNA. Methods in Molecular Biology, vol 2771. Humana, New York, NY. https://doi.org/10.1007/978-1-0716-3702-9_14
Download citation
DOI: https://doi.org/10.1007/978-1-0716-3702-9_14
Published:
Publisher Name: Humana, New York, NY
Print ISBN: 978-1-0716-3701-2
Online ISBN: 978-1-0716-3702-9
eBook Packages: Springer Protocols