Skip to main content

Big Data Analysis in Computational Biology and Bioinformatics

  • Protocol
  • First Online:
Reverse Engineering of Regulatory Networks

Part of the book series: Methods in Molecular Biology ((MIMB,volume 2719))

  • 782 Accesses

Abstract

Advancements in high-throughput technologies, genomics, transcriptomics, and metabolomics play an important role in obtaining biological information about living organisms. The field of computational biology and bioinformatics has experienced significant growth with the advent of high-throughput sequencing technologies and other high-throughput techniques. The resulting large amounts of data present both opportunities and challenges for data analysis. Big data analysis has become essential for extracting meaningful insights from the massive amount of data. In this chapter, we provide an overview of the current status of big data analysis in computational biology and bioinformatics. We discuss the various aspects of big data analysis, including data acquisition, storage, processing, and analysis. We also highlight some of the challenges and opportunities of big data analysis in this area of research. Despite the challenges, big data analysis presents significant opportunities like development of efficient and fast computing algorithms for advancing our understanding of biological processes, identifying novel biomarkers for breeding research and developments, predicting disease, and identifying potential drug targets for drug development programs.

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Subscribe and save

Springer+ Basic
$34.99 /Month
  • Get 10 units per month
  • Download Article/Chapter or eBook
  • 1 Unit = 1 Article or 1 Chapter
  • Cancel anytime
Subscribe now

Buy Now

Protocol
USD 49.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD 189.00
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Hardcover Book
USD 249.99
Price excludes VAT (USA)
  • Durable hardcover edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

Similar content being viewed by others

References

  1. Ching T, Himmelstein DS, Beaulieu-Jones BK, Kalinin AA, Do BT, Way GP, Alipanahi B (2018) Opportunities and obstacles for deep learning in biology and medicine. J R Soc Interface 15(141):20170387

    Article  Google Scholar 

  2. Yang J, Zhang X, Liu S (2017) Big data analytics in bioinformatics: algorithms, methods, and applications. Int J Data Min Bioinform 17(2):105–124

    Google Scholar 

  3. Yang CT, Kristiani E, Leong YK, Chang JS (2023) Big data and machine learning driven bioprocessing – recent trends and critical analysis. Bioresour Technol 372:128625

    Article  Google Scholar 

  4. Kim JH, Kim S (2019) Big data analysis in systems biology. J Microbiol Biotechnol 29(2):171–180

    Google Scholar 

  5. Ljosa V, Caie PD, Ter Horst R, Sokolnicki KL, Jenkins EL, Daya S, Carpenter AE (2013) Comparison of methods for image-based profiling of cellular morphological responses to small-molecule treatment. J Biomol Screen 18(10):1321–1329

    Article  Google Scholar 

  6. Khan S, Khan HU, Nazir S (2022) Systematic analysis of healthcare big data analytics for efficient care and disease diagnosing. Sci Rep 12:22377

    Article  Google Scholar 

  7. Chen Y, Palakal M, Zhou B (2017) Big data analytics in genomics. J Biomed Inform 67:1–3

    Google Scholar 

  8. Chen Y, Liu Y, Yu C (2019) Big data in computational biology: a review. Biomed Pharmacother 110:524–532

    Google Scholar 

  9. Peng Y, Tang H (2016) Big data analytics in cancer research. Curr Pharmacol Rep 2(6):305–313

    Google Scholar 

  10. Sharma A, Menon R (2019) Big data analytics in genomics: a review. Genomics 111(1):43–50

    Google Scholar 

  11. Karczewski, Konrad J, Snyder MP (2018) Integrative omics for health and disease. Nat Rev Genet 19(5):299–310

    Google Scholar 

  12. Nobile MS, Sealfon SC (2017) Big data and machine learning in neuroscience. J Neuroimmune Pharmacol 12(1):1–2

    Google Scholar 

  13. Alqurashi M, Mavromatis C (2018) Big data analytics in computational biology: a review. Curr Bioinforma 13(5):452–462

    Google Scholar 

  14. Leung MK, Delong A, Alipanahi B, Frey BJ (2015) Machine learning in genomic medicine: a review of computational problems and data sets. Proc IEEE 104(1):176–197

    Article  Google Scholar 

  15. Chen L, Li S, Bai Q, Yang J, Jiang S, Miao Y (2021) Review of image classification algorithms based on convolutional neural networks. Remote Sens 13(22):4712

    Article  Google Scholar 

  16. Heldens S, Sclocco A, Dreuning H, Werkhoven BV, Hijma P, Maassen J, Nieuwpoort RV (2022) litstudy: a Python package for literature reviews. SoftwareX 20:Article 101207

    Article  Google Scholar 

  17. Kumar P, Kumar A, Panwar S, Dash S, Sinha K, Chaudhary VK, Ray M (2018) Role of big data in agriculture – a statistical perspective. Ann Agric Res 39(2):210–215

    Google Scholar 

  18. Costa FF (2014) Big data in biomedicine. Drug Discov Today 19(4):433–440

    Article  Google Scholar 

  19. Das S, Chaudhuri S, Chatterjee R (2017) Big data analytics in healthcare and bioinformatics: a survey of the literature. J Biomed Inform 71:93–108

    Google Scholar 

  20. Langmead B, Nellore A (2018) Cloud computing for genomic data analysis and collaboration. Nat Rev Genet 19(4):208–219

    Article  Google Scholar 

  21. Bisong E (2019) Google colaboratory. In: Building machine learning and deep learning models on Google cloud platform. Apress, Berkeley

    Chapter  Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 2024 The Author(s), under exclusive license to Springer Science+Business Media, LLC, part of Springer Nature

About this protocol

Check for updates. Verify currency and authenticity via CrossMark

Cite this protocol

Kumar, P., Paul, R.K., Roy, H.S., Yeasin, M., Ajit, Paul, A.K. (2024). Big Data Analysis in Computational Biology and Bioinformatics. In: Mandal, S. (eds) Reverse Engineering of Regulatory Networks. Methods in Molecular Biology, vol 2719. Humana, New York, NY. https://doi.org/10.1007/978-1-0716-3461-5_11

Download citation

  • DOI: https://doi.org/10.1007/978-1-0716-3461-5_11

  • Published:

  • Publisher Name: Humana, New York, NY

  • Print ISBN: 978-1-0716-3460-8

  • Online ISBN: 978-1-0716-3461-5

  • eBook Packages: Springer Protocols

Publish with us

Policies and ethics