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Expression, Purification, and Solution-State NMR Analysis of the Two Human Single-Stranded DNA-Binding Proteins hSSB1 (NABP2/OBFC2B) and hSSB2 (NAPB1/OBFC2A)

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Single Stranded DNA Binding Proteins

Part of the book series: Methods in Molecular Biology ((MIMB,volume 2281))

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Abstract

Single-stranded DNA-binding proteins (SSBs) are essential to all living organisms as protectors and guardians of the genome. Apart from the well-characterized RPA, humans have also evolved two further SSBs, termed hSSB1 and hSSB2. Over the last few years, we have used NMR spectroscopy to determine the molecular and structural details of both hSSBs and their interactions with DNA and RNA. Here we provide a detailed overview of how to express and purify recombinant versions of these important human proteins for the purpose of detailed structural analysis by high-resolution solution-state NMR.

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References

  1. Dickey TH, Altschuler SE, Wuttke DS (2013) Single-stranded DNA-binding proteins: multiple domains for multiple functions. Structure 21:1074–1084. https://doi.org/10.1016/j.str.2013.05.013

    Article  CAS  PubMed  Google Scholar 

  2. Croft LV et al (2018) Human single-stranded DNA binding protein 1 (hSSB1, OBFC2B), a critical component of the DNA damage response. Semin Cell Dev Biol 86:121–128. https://doi.org/10.1016/j.semcdb.2018.03.014

    Article  CAS  PubMed  Google Scholar 

  3. Lawson T, El-Kamand S, Kariawasam R, Richard DJ, Cubeddu L, Gamsjaeger R (2019) A structural perspective on the regulation of human single-stranded DNA binding protein 1 (hSSB1, OBFC2B) function in DNA repair. Comput Struct Biotechnol J 17:441–446. https://doi.org/10.1016/j.csbj.2019.03.014

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  4. Bieri M, Kwan AH, Mobli M, King GF, Mackay JP, Gooley PR (2011) Macromolecular NMR spectroscopy for the non-spectroscopist: beyond macromolecular solution structure determination. FEBS J 278:704–715. https://doi.org/10.1111/j.1742-4658.2011.08005.x

    Article  CAS  PubMed  Google Scholar 

  5. Kaptein R (2013) NMR studies on protein-nucleic acid interaction. J Biomol NMR 56:1–2. https://doi.org/10.1007/s10858-013-9736-8

    Article  CAS  PubMed  Google Scholar 

  6. Kwan AH, Mobli M, Gooley PR, King GF, Mackay JP (2011) Macromolecular NMR spectroscopy for the non-spectroscopist. FEBS J 278:687–703. https://doi.org/10.1111/j.1742-4658.2011.08004.x

    Article  CAS  PubMed  Google Scholar 

  7. O’Connell MR, Gamsjaeger R, Mackay JP (2009) The structural analysis of protein-protein interactions by NMR spectroscopy. Proteomics 9:5224–5232. https://doi.org/10.1002/pmic.200900303

    Article  CAS  PubMed  Google Scholar 

  8. Kariawasam R, Knight M, Gamsjaeger R, Cubeddu L (2018) Backbone 1H, 13C and 15N resonance assignments of the OB domain of the single stranded DNA-binding protein hSSB2 (NABP1/OBFC2A) and chemical shift mapping of the DNA-binding interface. Biomol NMR Assign 12:107–111. https://doi.org/10.1007/s12104-017-9789-9

    Article  CAS  PubMed  Google Scholar 

  9. Kariawasam R, Touma C, Cubeddu L, Gamsjaeger R (2016) Backbone (1)H, (13)C and (15)N resonance assignments of the OB domain of the single stranded DNA-binding protein hSSB1 (NABP2/OBFC2B) and chemical shift mapping of the DNA-binding interface. Biomol NMR Assign 10:297–300. https://doi.org/10.1007/s12104-016-9687-6

    Article  CAS  PubMed  Google Scholar 

  10. Lawson T et al (2020) The structural details of the interaction of single-stranded DNA binding protein hSSB2 (NABP1/OBFC2A) with UV-damaged DNA. Proteins 88:319–326. https://doi.org/10.1002/prot.25806

    Article  CAS  PubMed  Google Scholar 

  11. Morten MJ, Gamsjaeger R, Cubeddu L, Kariawasam R, Peregrina J, Penedo JC, White MF (2017) High-affinity RNA binding by a hyperthermophilic single-stranded DNA-binding protein. Extremophiles 21:369–379. https://doi.org/10.1007/s00792-016-0910-2

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  12. Touma C et al (2017) A data-driven structural model of hSSB1 (NABP2/OBFC2B) self-oligomerization. Nucleic Acids Res 45:8609–8620. https://doi.org/10.1093/nar/gkx526

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  13. Touma C et al (2016) A structural analysis of DNA binding by hSSB1 (NABP2/OBFC2B) in solution. Nucleic Acids Res 44:7963–7973. https://doi.org/10.1093/nar/gkw617

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  14. Paquet N et al (2016) hSSB1 (NABP2/OBFC2B) is regulated by oxidative stress. Sci Rep 6:27446. https://doi.org/10.1038/srep27446

    Article  CAS  PubMed  PubMed Central  Google Scholar 

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Acknowledgment

We would like to thank Dr. Ann Kwan from the University of Sydney for expert advice and maintenance of NMR spectrometers.

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Correspondence to Liza Cubeddu or Roland Gamsjaeger .

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El-Kamand, S., Du Plessis, MD., Lawson, T., Cubeddu, L., Gamsjaeger, R. (2021). Expression, Purification, and Solution-State NMR Analysis of the Two Human Single-Stranded DNA-Binding Proteins hSSB1 (NABP2/OBFC2B) and hSSB2 (NAPB1/OBFC2A). In: Oliveira, M.T. (eds) Single Stranded DNA Binding Proteins. Methods in Molecular Biology, vol 2281. Humana, New York, NY. https://doi.org/10.1007/978-1-0716-1290-3_14

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  • DOI: https://doi.org/10.1007/978-1-0716-1290-3_14

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  • Publisher Name: Humana, New York, NY

  • Print ISBN: 978-1-0716-1289-7

  • Online ISBN: 978-1-0716-1290-3

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