Skip to main content

FLP-Mediated Site-Specific Gene Integration in Rice

  • Protocol
  • First Online:
Rice Genome Engineering and Gene Editing

Part of the book series: Methods in Molecular Biology ((MIMB,volume 2238))

Abstract

Enabling precise gene integration is important for installing traits in the plants. One of the practical methods of achieving precise gene integration is by using the yeast FLP-FRT recombination system that is efficient in directing DNA integration into the “engineered” genomic sites. The critical parameters of this method include the use of the thermostable version of FLP protein and the promoter trap design to select site-specific integration clones. The resulting transgenic plants display stable expression that is transmitted to the progeny. Therefore, FLP-mediated site-specific integration method could be used for trait engineering in the crop plants or testing gene functions in the model plants.

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Subscribe and save

Springer+ Basic
$34.99 /Month
  • Get 10 units per month
  • Download Article/Chapter or eBook
  • 1 Unit = 1 Article or 1 Chapter
  • Cancel anytime
Subscribe now

Buy Now

Protocol
USD 49.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD 109.00
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD 139.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info
Hardcover Book
USD 199.99
Price excludes VAT (USA)
  • Durable hardcover edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

Similar content being viewed by others

References

  1. Breyne P, Gheysen G, Jacobs A, Van Montagu M, Depicker A (1992) Effect of T-DNA configuration on transgene expression. Mol Gen Genet 235:389–396

    Article  CAS  Google Scholar 

  2. Kohli A, Twyman RM, Abranches R, Wegel E, Stoger E, Christou P (2003) Transgene integration, organization and interaction in plants. Plant Mol Biol 52:247–258

    Article  CAS  Google Scholar 

  3. Albert H, Dale EC, Lee E, Ow DW (1995) Site-specific integration of DNA into wild-type and mutant lox sites placed in the plant genome. Plant J 7:649–659

    Article  CAS  Google Scholar 

  4. Day CD, Lee E, Kobayashi J, Holappa LD, Albert H, Ow DW (2000) Transgene integration into the same chromosome location can produce alleles that express at a predictable level, or alleles that are differentially silenced. Genes Dev 14:2869–2880

    Article  CAS  Google Scholar 

  5. Srivastava V, Ariza-Nieto M, Wilson AJ (2004) Cre-mediated site-specific gene integration for consistent transgene expression in rice. Plant Biotech J 2:169–179

    Article  CAS  Google Scholar 

  6. Chawla R, Ariza-Nieto M, Wilson AJ, Moore SK, Srivastava V (2006) Transgene expression produced by biolistic-mediated, site-specific gene integration is consistently inherited by the subsequent generations. Plant Biotechnol J 4:209–218

    Article  CAS  Google Scholar 

  7. Nanto K, Sato K, Katayama Y, Ebinuma H (2009) Expression of a transgene exchanged by the recombinase mediated cassette exchange (RMCE) method in plants. Plant Cell Rep 28:777–785

    Article  CAS  Google Scholar 

  8. Srivastava V, Gidoni D (2010) Site-specific gene integration technologies for crop improvement. In Vitro Cell Dev Biol Plant 46:219–232

    Article  CAS  Google Scholar 

  9. Srivastava V, Thomson J (2016) Gene stacking by recombinases. Plant Biotechnol J 14:471–482

    Article  CAS  Google Scholar 

  10. Li Z, Xing A, Moon BP, McCardell RP, Mills K, Falco SC (2009) Site-specific integration of transgenes in soybean via recombinase-mediated DNA cassette exchange. Plant Physiol 151:1087–1095

    Article  CAS  Google Scholar 

  11. Nandy S, Zhao S, Pathak B, Manoharan M, Srivastava V (2015) Gene stacking in plant cell using recombinases for gene integration and nucleases for marker gene deletion. BMC Biotechnol 15:93. https://doi.org/10.1186/s12896-015-0212-2

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  12. Nandy S, Srivastava V (2011) Site-specific gene integration in rice genome mediated by the FLP-FRT recombination system. Plant Biotechnol J 9:713–721

    Article  CAS  Google Scholar 

  13. Nandy S, Srivastava V (2012) Marker-free site-specific gene integration in rice based on the use of two recombination systems. Plant Biotechnol J 10(8):904–912

    Article  CAS  Google Scholar 

  14. Buchholz F, Angrand PO, Stewart AF (1998) Improved properties of FLP recombinase evolved by cycling mutagenesis. Nat Biotechnol 16:657–662

    Article  CAS  Google Scholar 

  15. Akbudak MA, Srivastava V (2011) Improved FLP recombinase, FLPe, efficiently removes marker gene from transgene locus developed by Cre-lox mediated site-specific gene integration in rice. Mol Biotechnol 49:82–89

    Article  CAS  Google Scholar 

  16. Nguyen LD, Underwood JL, Nandy S, Akbudak MA, Srivastava V (2014) Strong activity of FLPe recombinase in rice plants does not correlate with the transmission of the recombined locus to the progeny. Plant Biotech Rep 8(6):455–462

    Article  Google Scholar 

  17. Srivastava V, Ariza-Nieto M, Wilson AJ (2004) Cre-mediated site-specific gene integration for consistent transgene expression in rice. Plant Biotechnol J 2(2):169–179

    Article  CAS  Google Scholar 

  18. Srivastava V, Ow DW (2002) Site-specific gene integration in rice. Mol Breed 8:345–350

    Article  Google Scholar 

  19. Hajdukiewicz P, Svab Z, Maliga P (1994) The small, versatile pPZP family of Agrobacterium binary vectors for plant transformation. Plant Mol Biol 25:989–994

    Article  CAS  Google Scholar 

  20. Christensen AH, Sharrock RA, Quail PH (1992) Maize polyubiquitin genes: structure, thermal perturbation of expression and transcript splicing, and promoter activity following transfer to protoplasts by electroporation. Plant Mol Biol 18:675–689

    Article  CAS  Google Scholar 

  21. Nishimura A, Aichi I, Matsuoka M (2006) A protocol for Agrobacterium mediated transformation in rice. Nat Protoc 1:2796–2802

    Article  CAS  Google Scholar 

Download references

Acknowledgments

Research support from USDA-NIFA (2010-33522-21715), NSF (RII Track-2 Project #1826836), and Arkansas Bioscience Institute are gratefully acknowledged.

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Vibha Srivastava .

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 2021 Springer Science+Business Media, LLC, part of Springer Nature

About this protocol

Check for updates. Verify currency and authenticity via CrossMark

Cite this protocol

Srivastava, V. (2021). FLP-Mediated Site-Specific Gene Integration in Rice. In: Bandyopadhyay, A., Thilmony, R. (eds) Rice Genome Engineering and Gene Editing. Methods in Molecular Biology, vol 2238. Humana, New York, NY. https://doi.org/10.1007/978-1-0716-1068-8_15

Download citation

  • DOI: https://doi.org/10.1007/978-1-0716-1068-8_15

  • Published:

  • Publisher Name: Humana, New York, NY

  • Print ISBN: 978-1-0716-1067-1

  • Online ISBN: 978-1-0716-1068-8

  • eBook Packages: Springer Protocols

Publish with us

Policies and ethics