Abstract
CRISPR-Cas9 is a method for genome editing that can be used efficiently for in vivo applications; the basic implementation of this method is used to generate genome site-directed sequence eliminations. Here we describe a protocol for genome editing using CRISPR-Cas9 in zebrafish (Danio rerio) one-cell embryos.
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References
Oppenheimer JM (1936) Structures developed in amphibians by implantation of living fish organizer. Proc Soc Exp Biol Med 34:461–463. https://doi.org/10.3181/00379727-34-8659C
Hawkins WE, Overstreet RM, Fournie JW, Walker WW (1985) Development of aquarium fish models for environmental carcinogenesis: tumor induction in seven species. J Appl Toxicol 5:261–264
MacRae CA, Peterson RT (2015) Zebrafish as tools for drug discovery. Nat Rev Drug Discov 14:721–731. https://doi.org/10.1038/nrd4627
Lam SH, Wu YL, Vega VB et al (2006) Conservation of gene expression signatures between zebrafish and human liver tumors and tumor progression. Nat Biotechnol 24:73–75. https://doi.org/10.1038/nbt1169
Mizgireuv IV, Revskoy SY (2006) Transplantable tumor lines generated in clonal zebrafish. Cancer Res 66:3120–3125. https://doi.org/10.1158/0008-5472.CAN-05-3800
Gagnon JA, Valen E, Thyme SB et al (2014) Efficient mutagenesis by Cas9 protein-mediated oligonucleotide insertion and large-scale assessment of single-guide RNAs. PLoS One 9:e98186. https://doi.org/10.1371/journal.pone.0098186
Bedell VM, Ekker SC (2015) Using engineered endonucleases to create knockout and knockin zebrafish models. Methods Mol Biol 1239:291–305. https://doi.org/10.1007/978-1-4939-1862-1_17
Ran FA, Hsu PD, Wright J et al (2013) Genome engineering using the CRISPR-Cas9 system. Nat Protoc 8:2281–2308. https://doi.org/10.1038/nprot.2013.143
Cong L, Ran FA, Cox D et al (2013) Multiplex genome engineering using CRISPR/Cas systems. Science 339:819–823. https://doi.org/10.1126/science.1231143
Labun K, Montague TG, Krause M et al (2019) CHOPCHOP v3: expanding the CRISPR web toolbox beyond genome editing. Nucleic Acids Res 47:W171–W174. https://doi.org/10.1093/nar/gkz365
Haeussler M, Schönig K, Eckert H et al (2016) Evaluation of off-target and on-target scoring algorithms and integration into the guide RNA selection tool CRISPOR. Genome Biol 17:148. https://doi.org/10.1186/s13059-016-1012-2
Pulecio J, Verma N, Mejía-Ramírez E et al (2017) CRISPR/Cas9-based engineering of the epigenome. Cell Stem Cell 21:431–447. https://doi.org/10.1016/j.stem.2017.09.006
Doench JG (2017) Am I ready for CRISPR? A user’s guide to genetic screens. Nat Rev Genet 19:67–80. https://doi.org/10.1038/nrg.2017.97
Carmona-Aldana F, Zampedri C, Suaste-Olmos F et al (2018) CTCF knockout reveals an essential role for this protein during the zebrafish development. Mech Dev 154:51–59. https://doi.org/10.1016/j.mod.2018.04.006
Acknowledgements
This work is supported by a grant from Consejo Nacional de Ciencia y Tecnología (Fronteras de la Ciencia 2015-290) and Fundación Miguel Alemán and by Programa de Apoyo a Proyectos de Investigación e Innovación Tecnológica (PAPIIT IN203917) to FR-T. HNN-M and CAP-A are doctoral students from Programa de Doctorado en Ciencias Biomédicas (661245 and 390924), Universidad Nacional Autónoma de México and GT-U is a doctoral student from the Programa de Doctorado en Ciencias Bioquímicas (630552), all of them received fellowships from Consejo Nacional de Ciencia y Tecnología.
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Carmona-Aldana, F., Nuñez-Martinez, H.N., Peralta-Alvarez, C.A., Tapia-Urzua, G., Recillas-Targa, F. (2021). Generation of Functional Genetic Study Models in Zebrafish Using CRISPR-Cas9. In: Robles-Flores, M. (eds) Cancer Cell Signaling. Methods in Molecular Biology, vol 2174. Humana, New York, NY. https://doi.org/10.1007/978-1-0716-0759-6_16
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DOI: https://doi.org/10.1007/978-1-0716-0759-6_16
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