Volume 8, issue 1, December 2012
50 articles in this issue
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Inflorescence stem grafting made easy in Arabidopsis
Authors (first, second and last of 4)
- Nazia Nisar
- Shelley Verma
- Christopher I Cazzonelli
- Content type: Methodology
- Open Access
- Published: 19 December 2012
- Article: 50
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CalloseMeasurer: a novel software solution to measure callose deposition and recognise spreading callose patterns
Authors (first, second and last of 4)
- Ji Zhou
- Thomas Spallek
- Silke Robatzek
- Content type: Methodology
- Open Access
- Published: 17 December 2012
- Article: 49
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Protocol: Chromatin immunoprecipitation (ChIP) methodology to investigate histone modifications in two model diatom species
Authors
- Xin Lin
- Leïla Tirichine
- Chris Bowler
- Content type: Methodology
- Open Access
- Published: 07 December 2012
- Article: 48
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An UPLC-MS/MS method for highly sensitive high-throughput analysis of phytohormones in plant tissues
Authors (first, second and last of 9)
- Gerd Ulrich Balcke
- Vinzenz Handrick
- Andrej Frolov
- Content type: Methodology
- Open Access
- Published: 22 November 2012
- Article: 47
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Plant lighting system with five wavelength-band light-emitting diodes providing photon flux density and mixing ratio control
Authors
- Akira Yano
- Kazuhiro Fujiwara
- Content type: Methodology
- Open Access
- Published: 22 November 2012
- Article: 46
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PhenoPhyte: a flexible affordable method to quantify 2D phenotypes from imagery
Authors (first, second and last of 7)
- Jason M Green
- Heidi Appel
- Chi-Ren Shyu
- Content type: Methodology
- Open Access
- Published: 06 November 2012
- Article: 45
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FACS-based purification of Arabidopsis microspores, sperm cells and vegetative nuclei
Authors (first, second and last of 8)
- Filipe Borges
- Rui Gardner
- Jörg D Becker
- Content type: Methodology
- Open Access
- Published: 17 October 2012
- Article: 44
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Phytotracker, an information management system for easy recording and tracking of plants, seeds and plasmids
Authors (first, second and last of 5)
- Jeroen Nieuwland
- Emily Sornay
- James AH Murray
- Content type: Software
- Open Access
- Published: 13 October 2012
- Article: 43
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Concurrent profiling of indole-3-acetic acid, abscisic acid, and cytokinins and structurally related purines by high-performance-liquid-chromatography tandem electrospray mass spectrometry
Authors
- Scott C Farrow
- RJ Neil Emery
- Content type: Methodology
- Open Access
- Published: 12 October 2012
- Article: 42
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A cost-effective method for Illumina small RNA-Seq library preparation using T4 RNA ligase 1 adenylated adapters
Authors (first, second and last of 6)
- Yun-Ru Chen
- Yi Zheng
- Zhangjun Fei
- Content type: Methodology
- Open Access
- Published: 20 September 2012
- Article: 41
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A novel xylogenic suspension culture model for exploring lignification in Phyllostachys bamboo
Authors (first, second and last of 4)
- Shinjiro Ogita
- Taiji Nomura
- Yasuo Kato
- Content type: Methodology
- Open Access
- Published: 14 September 2012
- Article: 40
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A method to quantify infection and colonization of holm oak (Quercus ilex) roots by Phytophthora cinnamomi
Authors (first, second and last of 4)
- Francisco J Ruiz-Gómez
- Rafael Sánchez-Cuesta
- Alejandro Pérez-de-Luque
- Content type: Methodology
- Open Access
- Published: 13 September 2012
- Article: 39
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Simple and efficient methods to generate split roots and grafted plants useful for long-distance signaling studies in Medicago truncatula and other small plants
Authors
- Tessema K Kassaw
- Julia A Frugoli
- Content type: Methodology
- Open Access
- Published: 12 September 2012
- Article: 38
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Development of a rapid and inexpensive method to reveal natural antisense transcripts
Authors
- Silvio Collani
- Gianni Barcaccia
- Content type: Methodology
- Open Access
- Published: 12 September 2012
- Article: 37
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Barley callus: a model system for bioengineering of starch in cereals
Authors (first, second and last of 5)
- Massimiliano Carciofi
- Andreas Blennow
- Kim H Hebelstrup
- Content type: Methodology
- Open Access
- Published: 07 September 2012
- Article: 36
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Rapid quantification of plant-powdery mildew interactions by qPCR and conidiospore counts
Authors
- Ralf Weßling
- Ralph Panstruga
- Content type: Methodology
- Open Access
- Published: 31 August 2012
- Article: 35
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An improved allele-specific PCR primer design method for SNP marker analysis and its application
Authors (first, second and last of 9)
- Jing Liu
- Shunmou Huang
- Wei Hua
- Content type: Methodology
- Open Access
- Published: 24 August 2012
- Article: 34
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High throughput phenotyping for aphid resistance in large plant collections
Authors (first, second and last of 5)
- Xi Chen
- Ben Vosman
- Colette Broekgaarden
- Content type: Methodology
- Open Access
- Published: 17 August 2012
- Article: 33
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Universal Multiplex PCR: a novel method of simultaneous amplification of multiple DNA fragments
Authors
- Daxing Wen
- Chunqing Zhang
- Content type: Methodology
- Open Access
- Published: 15 August 2012
- Article: 32
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Protocol: High-throughput and quantitative assays of auxin and auxin precursors from minute tissue samples
Authors (first, second and last of 4)
- Xing Liu
- Adrian D Hegeman
- Jerry D Cohen
- Content type: Methodology
- Open Access
- Published: 10 August 2012
- Article: 31
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A simple and efficient transient transformation for hybrid aspen (Populus tremula × P. tremuloides)
Authors
- Naoki Takata
- Maria E Eriksson
- Content type: Methodology
- Open Access
- Published: 07 August 2012
- Article: 30
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OSCILLATOR: A system for analysis of diurnal leaf growth using infrared photography combined with wavelet transformation
Authors (first, second and last of 4)
- Ralph Bours
- Manickam Muthuraman
- Alexander van der Krol
- Content type: Methodology
- Open Access
- Published: 07 August 2012
- Article: 29
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Methods of staining and visualization of sphingolipid enriched and non-enriched plasma membrane regions of Arabidopsis thaliana with fluorescent dyes and lipid analogues
Authors (first, second and last of 5)
- Jörg O Blachutzik
- Fatih Demir
- Gregory S Harms
- Content type: Methodology
- Open Access
- Published: 06 August 2012
- Article: 28
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Method: low-cost delivery of the cotton leaf crumple virus-induced gene silencing system
Authors
- John Richard Tuttle
- Candace H Haigler
- Dominique Robertson
- Content type: Methodology
- Open Access
- Published: 01 August 2012
- Article: 27
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A high throughput DNA extraction method with high yield and quality
Authors
- Zhanguo Xin
- Junping Chen
- Content type: Methodology
- Open Access
- Published: 28 July 2012
- Article: 26
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Screening for in planta protein-protein interactions combining bimolecular fluorescence complementation with flow cytometry
Authors (first, second and last of 9)
- Kenneth Wayne Berendzen
- Maik Böhmer
- Klaus Harter
- Content type: Methodology
- Open Access
- Published: 12 July 2012
- Article: 25
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Robust transformation procedure for the production of transgenic farmer-preferred cassava landraces
Authors (first, second and last of 4)
- Ima M Zainuddin
- Kim Schlegel
- Hervé Vanderschuren
- Content type: Methodology
- Open Access
- Published: 11 July 2012
- Article: 24
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Robust reconstitution of active cell-cycle control complexes from co-expressed proteins in bacteria
Authors
- Hirofumi Harashima
- Arp Schnittger
- Content type: Methodology
- Open Access
- Published: 28 June 2012
- Article: 23
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Use of ex vitro composite plants to study the interaction of cowpea (Vigna unguiculata L.) with the root parasitic angiosperm Striga gesnerioides
Authors
- Karolina E Mellor
- Ava M Hoffman
- Michael P Timko
- Content type: Methodology
- Open Access
- Published: 28 June 2012
- Article: 22
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A new method to identify flanking sequence tags in chlamydomonas using 3’-RACE
Authors
- Laurence Meslet-Cladière
- Olivier Vallon
- Content type: Methodology
- Open Access
- Published: 26 June 2012
- Article: 21
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Striga parasitizes transgenic hairy roots of Zea mays and provides a tool for studying plant-plant interactions
Authors (first, second and last of 6)
- Steven Runo
- Sarah Macharia
- Julie Scholes
- Content type: Methodology
- Open Access
- Published: 21 June 2012
- Article: 20
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FSTVAL: a new web tool to validate bulk flanking sequence tags
Authors (first, second and last of 12)
- Joung Sug Kim
- Jiye Kim
- Yeon-Ki Kim
- Content type: Software
- Open Access
- Published: 18 June 2012
- Article: 19
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Evaluation of alternative RNA labeling protocols for transcript profiling with Arabidopsis AGRONOMICS1 tiling arrays
Authors (first, second and last of 5)
- Marlen Müller
- Andrea Patrignani
- Lars Hennig
- Content type: Methodology
- Open Access
- Published: 13 June 2012
- Article: 18
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A new approach for cytokinin isolation from Arabidopsis tissues using miniaturized purification: pipette tip solid-phase extraction
Authors (first, second and last of 7)
- Jana Svačinová
- Ondřej Novák
- Karel Doležal
- Content type: Methodology
- Open Access
- Published: 17 May 2012
- Article: 17
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The Arabidopsis thaliana-Alternaria brassicicola pathosystem: A model interaction for investigating seed transmission of necrotrophic fungi
Authors (first, second and last of 10)
- Stephanie Pochon
- Emmanuel Terrasson
- Claire Campion
- Content type: Methodology
- Open Access
- Published: 09 May 2012
- Article: 16
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Protocol: optimised electrophyiological analysis of intact guard cells from Arabidopsis
Authors (first, second and last of 5)
- Zhong-Hua Chen
- Cornelia Eisenach
- Michael R Blatt
- Content type: Methodology
- Open Access
- Published: 06 May 2012
- Article: 15
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Poinsettia protoplasts - a simple, robust and efficient system for transient gene expression studies
Authors
- Andrea Pitzschke
- Helene Persak
- Content type: Methodology
- Open Access
- Published: 04 May 2012
- Article: 14
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A novel fluorescent assay for sucrose transporters
Authors
- Peter J Gora
- Anke Reinders
- John M Ward
- Content type: Methodology
- Open Access
- Published: 04 April 2012
- Article: 13
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Targeted parallel sequencing of large genetically-defined genomic regions for identifying mutations in Arabidopsis
Authors
- Kun-hsiang Liu
- Matthew McCormack
- Jen Sheen
- Content type: Methodology
- Open Access
- Published: 30 March 2012
- Article: 12
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Xylem sap collection and extraction methodologies to determine in vivo concentrations of ABA and its bound forms by gas chromatography-mass spectrometry (GC-MS)
Authors
- Andrew G Netting
- Julian C Theobald
- Ian C Dodd
- Content type: Methodology
- Open Access
- Published: 22 March 2012
- Article: 11
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A novel procedure for absolute real-time quantification of gene expression patterns
Authors
- Yingqing Lu
- Lulu Xie
- Jiani Chen
- Content type: Methodology
- Open Access
- Published: 09 March 2012
- Article: 9
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Isolation of dimorphic chloroplasts from the single-cell C4 species Bienertia sinuspersici
Authors
- Shiu-Cheung Lung
- Makoto Yanagisawa
- Simon DX Chuong
- Content type: Methodology
- Open Access
- Published: 06 March 2012
- Article: 8
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Identifying biological landmarks using a novel cell measuring image analysis tool: Cell-o-Tape
Authors (first, second and last of 8)
- Andrew P French
- Michael H Wilson
- Darren M Wells
- Content type: Software
- Open Access
- Published: 02 March 2012
- Article: 7
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A rice transient assay system identifies a novel domain in NRR required for interaction with NH1/OsNPR1 and inhibition of NH1-mediated transcriptional activation
Authors (first, second and last of 6)
- Mawsheng Chern
- Wei Bai
- Pamela C Ronald
- Content type: Research
- Open Access
- Published: 21 February 2012
- Article: 6
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PhosphoRice: a meta-predictor of rice-specific phosphorylation sites
Authors (first, second and last of 9)
- Shufu Que
- Kuan Li
- Huaqin He
- Content type: Methodology
- Open Access
- Published: 03 February 2012
- Article: 5
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A simple and efficient method for the long-term preservation of plant cell suspension cultures
Authors (first, second and last of 4)
- Anne-Marie Boisson
- Elisabeth Gout
- Corinne Rivasseau
- Content type: Methodology
- Open Access
- Published: 30 January 2012
- Article: 4
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Hyperspectral imaging for small-scale analysis of symptoms caused by different sugar beet diseases
Authors (first, second and last of 5)
- Anne-Katrin Mahlein
- Ulrike Steiner
- Erich-Christian Oerke
- Content type: Methodology
- Open Access
- Published: 24 January 2012
- Article: 3
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A convenient method for simultaneous quantification of multiple phytohormones and metabolites: application in study of rice-bacterium interaction
Authors (first, second and last of 4)
- Hongbo Liu
- Xianghua Li
- Shiping Wang
- Content type: Methodology
- Open Access
- Published: 15 January 2012
- Article: 2
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Precursor uptake assays and metabolic analyses in isolated tomato fruit chromoplasts
Authors (first, second and last of 7)
- Djédoux Maxime Angaman
- Rocco Petrizzo
- Albert Boronat
- Content type: Methodology
- Open Access
- Published: 13 January 2012
- Article: 1