Volume 11, issue 1, December 2015
57 articles in this issue
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An improved method with a wider applicability to isolate plant mitochondria for mtDNA extraction
Authors
- Zaheer Ahmed
- Yong-Bi Fu
- Content type: Methodology
- Open Access
- Published: 21 December 2015
- Article: 56
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Fast virtual histology using X-ray in-line phase tomography: application to the 3D anatomy of maize developing seeds
Authors (first, second and last of 10)
- David Rousseau
- Thomas Widiez
- Peter Rogowsky
- Content type: Methodology
- Open Access
- Published: 18 December 2015
- Article: 55
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Rapid protocol for visualization of rust fungi structures using fluorochrome Uvitex 2B
Authors
- Sheshanka Dugyala
- Pawel Borowicz
- Maricelis Acevedo
- Content type: Methodology
- Open Access
- Published: 11 December 2015
- Article: 54
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SensorDB: a virtual laboratory for the integration, visualization and analysis of varied biological sensor data
Authors (first, second and last of 9)
- Ali Salehi
- Jose Jimenez-Berni
- Robert T. Furbank
- Content type: Software
- Open Access
- Published: 08 December 2015
- Article: 53
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“Rolled-upness”: phenotyping leaf rolling in cereals using computer vision and functional data analysis approaches
Authors (first, second and last of 5)
- X. R. R. Sirault
- A. G. Condon
- G. J. Rebetzke
- Content type: Methodology
- Open Access
- Published: 14 November 2015
- Article: 52
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Digital imaging of root traits (DIRT): a high-throughput computing and collaboration platform for field-based root phenomics
Authors (first, second and last of 9)
- Abhiram Das
- Hannah Schneider
- Alexander Bucksch
- Content type: Database
- Open Access
- Published: 02 November 2015
- Article: 51
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Protocol: an improved and universal procedure for whole-mount immunolocalization in plants
Authors (first, second and last of 7)
- Taras Pasternak
- Olaf Tietz
- Klaus Palme
- Content type: Methodology
- Open Access
- Published: 28 October 2015
- Article: 50
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The isolation of early nuclear endosperm of Oryza sativa to facilitate gene expression analysis and screening imprinted genes
Authors (first, second and last of 4)
- Quan Kuang
- Xiaobo Yu
- Meng-xiang Sun
- Content type: Methodology
- Open Access
- Published: 22 October 2015
- Article: 49
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A whole-plant chamber system for parallel gas exchange measurements of Arabidopsis and other herbaceous species
Authors (first, second and last of 5)
- Katharina Kölling
- Gavin M. George
- Samuel C. Zeeman
- Content type: Methodology
- Open Access
- Published: 16 October 2015
- Article: 48
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Within leaf variation is the largest source of variation in agroinfiltration of Nicotiana benthamiana
Authors
- Hany Bashandy
- Salla Jalkanen
- Teemu H. Teeri
- Content type: Methodology
- Open Access
- Published: 14 October 2015
- Article: 47
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Protocol: a medium-throughput method for determination of cellulose content from single stem pieces of Arabidopsis thaliana
Authors
- Manoj Kumar
- Simon Turner
- Content type: Methodology
- Open Access
- Published: 12 October 2015
- Article: 46
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Plant Methods reviewer acknowledgement 2014
Authors
- Brian G. Forde
- Michael R. Roberts
- Content type: Reviewer acknowledgement
- Open Access
- Published: 30 September 2015
- Article: 45
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How well do you know your growth chambers? Testing for chamber effect using plant traits
Authors (first, second and last of 5)
- Amanda S. Porter
- Christiana Evans-Fitz.Gerald
- Caroline Elliott-Kingston
- Content type: Research
- Open Access
- Published: 22 September 2015
- Article: 44
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Guidelines for measuring and reporting environmental parameters for experiments in greenhouses
Authors (first, second and last of 7)
- A J Both
- L Benjamin
- G Pitkin
- Content type: Commentary
- Open Access
- Published: 11 September 2015
- Article: 43
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Improved DNase-seq protocol facilitates high resolution mapping of DNase I hypersensitive sites in roots in Arabidopsis thaliana
Authors
- Jason S. Cumbie
- Sergei A. Filichkin
- Molly Megraw
- Content type: Methodology
- Open Access
- Published: 04 September 2015
- Article: 42
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Rapid phenotyping of crop root systems in undisturbed field soils using X-ray computed tomography
Authors (first, second and last of 4)
- Johannes Pfeifer
- Norbert Kirchgessner
- Achim Walter
- Content type: Methodology
- Open Access
- Published: 28 August 2015
- Article: 41
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Optimisation approaches for concurrent transmitted light imaging during confocal microscopy
Authors
- David A. Collings
- Content type: Methodology
- Open Access
- Published: 21 August 2015
- Article: 40
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A high-throughput pipeline for detecting locus-specific polymorphism in hexaploid wheat (Triticum aestivum L.)
Authors (first, second and last of 7)
- Jian Ma
- Jiri Stiller
- Chunji Liu
- Content type: Methodology
- Open Access
- Published: 04 August 2015
- Article: 39
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A pin-fasten grafting method provides a non-sterile and highly efficient method for grafting Arabidopsis at diverse developmental stages
Authors
- Nien-Chen Huang
- Tien-Shin Yu
- Content type: Methodology
- Open Access
- Published: 08 July 2015
- Article: 38
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Protocol: genetic transformation of the fern Ceratopteris richardii through microparticle bombardment
Authors
- Andrew R G Plackett
- Ester H Rabbinowitsch
- Jane A Langdale
- Content type: Methodology
- Open Access
- Published: 03 July 2015
- Article: 37
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Biases underlying species detection using fluorescent amplified-fragment length polymorphisms yielded from roots
Authors
- Justine Karst
- Pak Chow
- Simon M Landhäusser
- Content type: Methodology
- Open Access
- Published: 26 June 2015
- Article: 36
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Unmanned aerial platform-based multi-spectral imaging for field phenotyping of maize
Authors (first, second and last of 13)
- M Zaman-Allah
- O Vergara
- J Cairns
- Content type: Methodology
- Open Access
- Published: 24 June 2015
- Article: 35
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A bioinformatics approach to distinguish plant parasite and host transcriptomes in interface tissue by classifying RNA-Seq reads
Authors (first, second and last of 9)
- Daisuke Ikeue
- Christian Schudoma
- Koh Aoki
- Content type: Methodology
- Open Access
- Published: 03 May 2015
- Article: 34
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TRiP: Tracking Rhythms in Plants, an automated leaf movement analysis program for circadian period estimation
Authors (first, second and last of 5)
- Kathleen Greenham
- Ping Lou
- C Robertson McClung
- Content type: Methodology
- Open Access
- Published: 03 May 2015
- Article: 33
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A comparison of high-throughput techniques for assaying circadian rhythms in plants
Authors (first, second and last of 6)
- Andrew J Tindall
- Jade Waller
- Anthony Hall
- Content type: Review
- Open Access
- Published: 03 May 2015
- Article: 32
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Growth and stress response in Arabidopsis thaliana, Nicotiana benthamiana, Glycine max, Solanum tuberosum and Brassica napus cultivated under polychromatic LEDs
Authors (first, second and last of 8)
- Martin Janda
- Oldřich Navrátil
- Tomáš Moravec
- Content type: Methodology
- Open Access
- Published: 30 April 2015
- Article: 31
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CSGM Designer: a platform for designing cross-species intron-spanning genic markers linked with genome information of legumes
Authors (first, second and last of 7)
- Jin-Hyun Kim
- Chaeyoung Lee
- Hong-Kyu Choi
- Content type: Methodology
- Open Access
- Published: 18 April 2015
- Article: 30
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Automated phenotyping of plant shoots using imaging methods for analysis of plant stress responses – a review
Authors (first, second and last of 4)
- Jan F Humplík
- Dušan Lazár
- Lukáš Spíchal
- Content type: Review
- Open Access
- Published: 17 April 2015
- Article: 29
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Hyperspectral phenotyping on the microscopic scale: towards automated characterization of plant-pathogen interactions
Authors (first, second and last of 8)
- Matheus Kuska
- Mirwaes Wahabzada
- Anne-Katrin Mahlein
- Content type: Methodology
- Open Access
- Published: 15 April 2015
- Article: 28
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TETX: a novel nuclear selection marker for Chlamydomonas reinhardtii transformation
Authors
- Sergio A Garcia-Echauri
- Guy A Cardineau
- Content type: Methodology
- Open Access
- Published: 15 April 2015
- Article: 27
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Image analysis of anatomical traits in stalk transections of maize and other grasses
Authors (first, second and last of 5)
- Sven Heckwolf
- Marlies Heckwolf
- Edgar P Spalding
- Content type: Methodology
- Open Access
- Published: 09 April 2015
- Article: 26
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A software tool for the input and management of phenotypic data using personal digital assistants and other mobile devices
Authors
- Karin Köhl
- Jürgen Gremmels
- Content type: Software
- Open Access
- Published: 07 April 2015
- Article: 25
This is part of 1 collection: -
Phenoplant: a web resource for the exploration of large chlorophyll fluorescence image datasets
Authors (first, second and last of 10)
- Céline Rousseau
- Gilles Hunault
- Tristan Boureau
- Content type: Methodology
- Open Access
- Published: 03 April 2015
- Article: 24
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Quantifying spatial heterogeneity of chlorophyll fluorescence during plant growth and in response to water stress
Authors (first, second and last of 6)
- Justine Bresson
- François Vasseur
- Denis Vile
- Content type: Methodology
- Open Access
- Published: 26 March 2015
- Article: 23
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An optical imaging chamber for viewing living plant cells and tissues at high resolution for extended periods
Authors (first, second and last of 4)
- Grant Calder
- Chris Hindle
- Peter Shaw
- Content type: Methodology
- Open Access
- Published: 22 March 2015
- Article: 22
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Erratum: In planta assays involving epigenetically silenced genes reveal inhibition of cytosine methylation by genistein
Authors
- Sachiko Arase
- Megumi Kasai
- Akira Kanazawa
- Content type: Erratum
- Open Access
- Published: 21 March 2015
- Article: 21
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Automated integrative high-throughput phenotyping of plant shoots: a case study of the cold-tolerance of pea (Pisum sativum L.)
Authors (first, second and last of 6)
- Jan F Humplík
- Dušan Lazár
- Lukáš Spíchal
- Content type: Methodology
- Open Access
- Published: 19 March 2015
- Article: 20
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Ion Torrent sequencing as a tool for mutation discovery in the flax (Linum usitatissimum L.) genome
Authors (first, second and last of 5)
- Leonardo Galindo-González
- David Pinzón-Latorre
- Michael K Deyholos
- Content type: Methodology
- Open Access
- Published: 14 March 2015
- Article: 19
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Mathematical modeling of positron emission tomography (PET) data to assess radiofluoride transport in living plants following petiolar administration
Authors (first, second and last of 11)
- Alexander K Converse
- Elizabeth O Ahlers
- Onofre T DeJesus
- Content type: Research
- Open Access
- Published: 13 March 2015
- Article: 18
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Direct comparison of MRI and X-ray CT technologies for 3D imaging of root systems in soil: potential and challenges for root trait quantification
Authors (first, second and last of 8)
- Ralf Metzner
- Anja Eggert
- Siegfried Jahnke
- Content type: Methodology
- Open Access
- Published: 11 March 2015
- Article: 17
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A portable extensional rheometer for measuring the viscoelasticity of pitcher plant and other sticky liquids in the field
Authors (first, second and last of 9)
- Catherine Collett
- Alia Ardron
- D Ian Wilson
- Content type: Methodology
- Open Access
- Published: 07 March 2015
- Article: 16
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Monitoring leaf water content with THz and sub-THz waves
Authors
- Ralf Gente
- Martin Koch
- Content type: Review
- Open Access
- Published: 06 March 2015
- Article: 15
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Plant phenotyping: from bean weighing to image analysis
Authors
- Achim Walter
- Frank Liebisch
- Andreas Hund
- Content type: Review
- Open Access
- Published: 04 March 2015
- Article: 14
This is part of 1 collection: -
High-throughput phenotyping of seminal root traits in wheat
Authors (first, second and last of 6)
- Cecile AI Richard
- Lee T Hickey
- Jack T Christopher
- Content type: Methodology
- Open Access
- Published: 01 March 2015
- Article: 13
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Two-dimensional multifractal detrended fluctuation analysis for plant identification
Authors (first, second and last of 4)
- Fang Wang
- Deng-wen Liao
- Gui-ping Liao
- Content type: Methodology
- Open Access
- Published: 26 February 2015
- Article: 12
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The leaf angle distribution of natural plant populations: assessing the canopy with a novel software tool
Authors (first, second and last of 4)
- Mark Müller-Linow
- Francisco Pinto-Espinosa
- Uwe Rascher
- Content type: Software
- Open Access
- Published: 26 February 2015
- Article: 11
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An ontology approach to comparative phenomics in plants
Authors (first, second and last of 20)
- Anika Oellrich
- Ramona L Walls
- Eva Huala
- Content type: Methodology
- Open Access
- Published: 25 February 2015
- Article: 10
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Remote, aerial phenotyping of maize traits with a mobile multi-sensor approach
Authors (first, second and last of 5)
- Frank Liebisch
- Norbert Kirchgessner
- Andreas Hund
- Content type: Methodology
- Open Access
- Published: 25 February 2015
- Article: 9
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Non-invasive assessment of leaf water status using a dual-mode microwave resonator
Authors (first, second and last of 11)
- Said Dadshani
- Andriy Kurakin
- Agim Ballvora
- Content type: Methodology
- Open Access
- Published: 22 February 2015
- Article: 8
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