Volume 1, issue 1, December 2008
64 articles in this issue
-
-
Global gene expression analyses of bystander and alpha particle irradiated normal human lung fibroblasts: Synchronous and differential responses
Authors
- Shanaz A Ghandhi
- Benjamin Yaghoubian
- Sally A Amundson
- Content type: Research article
- Open Access
- Published: 24 December 2008
- Article: 63
-
Biological processes, properties and molecular wiring diagrams of candidate low-penetrance breast cancer susceptibility genes
Authors (first, second and last of 8)
- Núria Bonifaci
- Antoni Berenguer
- Miguel Angel Pujana
- Content type: Research article
- Open Access
- Published: 18 December 2008
- Article: 62
-
An expression meta-analysis of predicted microRNA targets identifies a diagnostic signature for lung cancer
Authors
- Yu Liang
- Content type: Research article
- Open Access
- Published: 16 December 2008
- Article: 61
-
Monocytes of patients with familial hypercholesterolemia show alterations in cholesterol metabolism
Authors (first, second and last of 8)
- Sandy Mosig
- Knut Rennert
- Harald Funke
- Content type: Research article
- Open Access
- Published: 28 November 2008
- Article: 60
-
Carboplatin-induced gene expression changes in vitroare prognostic of survival in epithelial ovarian cancer
Authors (first, second and last of 7)
- Panagiotis A Konstantinopoulos
- Elena Fountzilas
- Dimitrios Spentzos
- Content type: Research article
- Open Access
- Published: 28 November 2008
- Article: 59
-
New Jersey Center for Tourette Syndrome Sharing Repository: methods and sample description
Authors
- Gary A Heiman
- Robert A King
- Jay A Tischfield
- Content type: Database
- Open Access
- Published: 26 November 2008
- Article: 58
-
Discovery of DNA methylation markers in cervical cancer using relaxation ranking
Authors (first, second and last of 7)
- Maté Ongenaert
- G Bea A Wisman
- Ed Schuuring
- Content type: Research article
- Open Access
- Published: 24 November 2008
- Article: 57
-
Searching for molecular markers in head and neck squamous cell carcinomas (HNSCC) by statistical and bioinformatic analysis of larynx-derived SAGE libraries
Authors (first, second and last of 12)
- Nelson JF Silveira
- Leonardo Varuzza
- Eloiza H Tajara
- Content type: Research article
- Open Access
- Published: 11 November 2008
- Article: 56
-
Pathways affected by asbestos exposure in normal and tumour tissue of lung cancer patients
Authors (first, second and last of 9)
- Salla Ruosaari
- Tuija Hienonen-Kempas
- Sisko Anttila
- Content type: Research article
- Open Access
- Published: 11 November 2008
- Article: 55
-
The distinctive gastric fluid proteome in gastric cancer reveals a multi-biomarker diagnostic profile
Authors (first, second and last of 13)
- Oi Lian Kon
- Tai-Tung Yip
- M Priyanthi Kumarasinghe
- Content type: Research article
- Open Access
- Published: 25 October 2008
- Article: 54
-
A global transcriptional view of apoptosis in human T-cell activation
Authors
- Min Wang
- Dirk Windgassen
- Eleftherios T Papoutsakis
- Content type: Research article
- Open Access
- Published: 23 October 2008
- Article: 53
-
Gene expression analysis of glioblastomas identifies the major molecular basis for the prognostic benefit of younger age
Authors (first, second and last of 10)
- Yohan Lee
- Adrienne C Scheck
- Stanley F Nelson
- Content type: Research article
- Open Access
- Published: 21 October 2008
- Article: 52
-
Expression-based Pathway Signature Analysis (EPSA): Mining publicly available microarray data for insight into human disease
Authors (first, second and last of 4)
- Jessica D Tenenbaum
- Michael G Walker
- Atul J Butte
- Content type: Technical advance
- Open Access
- Published: 20 October 2008
- Article: 51
-
Multiplex ligation-dependent probe amplification for genetic screening in autism spectrum disorders: Efficient identification of known microduplications and identification of a novel microduplication in ASMT
Authors (first, second and last of 14)
- Guiqing Cai
- Lisa Edelmann
- Joseph D Buxbaum
- Content type: Research article
- Open Access
- Published: 16 October 2008
- Article: 50
-
The molecular basis of genistein-induced mitotic arrest and exit of self-renewal in embryonal carcinoma and primary cancer cell lines
Authors (first, second and last of 4)
- Christian RA Regenbrecht
- Marc Jung
- James Adjaye
- Content type: Research article
- Open Access
- Published: 10 October 2008
- Article: 49
-
The Comparative Toxicogenomics Database facilitates identification and understanding of chemical-gene-disease associations: arsenic as a case study
Authors (first, second and last of 5)
- Allan P Davis
- Cynthia G Murphy
- Carolyn J Mattingly
- Content type: Research article
- Open Access
- Published: 09 October 2008
- Article: 48
-
DNA methylation changes in ovarian cancer are cumulative with disease progression and identify tumor stage
Authors (first, second and last of 6)
- George S Watts
- Bernard W Futscher
- Stephen L Rose
- Content type: Research article
- Open Access
- Published: 30 September 2008
- Article: 47
-
A systems biology approach to construct the gene regulatory network of systemic inflammation via microarray and databases mining
Authors (first, second and last of 4)
- Bor-Sen Chen
- Shih-Kuang Yang
- Yung-Jen Chuang
- Content type: Research article
- Open Access
- Published: 30 September 2008
- Article: 46
-
Gene expression in BMPR2 mutation carriers with and without evidence of Pulmonary Arterial Hypertension suggests pathways relevant to disease penetrance
Authors (first, second and last of 9)
- James West
- Joy Cogan
- Jim Loyd
- Content type: Research article
- Open Access
- Published: 29 September 2008
- Article: 45
-
A genome-wide association study for late-onset Alzheimer's disease using DNA pooling
Authors (first, second and last of 13)
- Richard Abraham
- Valentina Moskvina
- George Kirov
- Content type: Research article
- Open Access
- Published: 29 September 2008
- Article: 44
-
Regulatory subunits of PKA define an axis of cellular proliferation/differentiation in ovarian cancer cells
Authors (first, second and last of 8)
- Chris Cheadle
- Maria Nesterova
- Yoon S Cho-Chung
- Content type: Research article
- Open Access
- Published: 26 September 2008
- Article: 43
-
The removal of multiplicative, systematic bias allows integration of breast cancer gene expression datasets – improving meta-analysis and prediction of prognosis
Authors (first, second and last of 8)
- Andrew H Sims
- Graeme J Smethurst
- Robert B Clarke
- Content type: Research article
- Open Access
- Published: 21 September 2008
- Article: 42
-
A high confidence, manually validated human blood plasma protein reference set
Authors (first, second and last of 4)
- Susann Schenk
- Gary J Schoenhals
- Matthias Mann
- Content type: Research article
- Open Access
- Published: 15 September 2008
- Article: 41
-
Transcriptomic signature of Bexarotene (Rexinoid LGD1069) on mammary gland from three transgenic mouse mammary cancer models
Authors (first, second and last of 11)
- Martin C Abba
- Yuhui Hu
- C Marcelo Aldaz
- Content type: Research article
- Open Access
- Published: 11 September 2008
- Article: 40
-
Identification of a gene signature in cell cycle pathway for breast cancer prognosis using gene expression profiling data
Authors (first, second and last of 9)
- Jiangang Liu
- Andrew Campen
- Shuyu Li
- Content type: Research article
- Open Access
- Published: 11 September 2008
- Article: 39
-
Tobacco use induces anti-apoptotic, proliferative patterns of gene expression in circulating leukocytes of Caucasian males
Authors (first, second and last of 11)
- Peter C Charles
- Brian D Alder
- George A Stouffer
- Content type: Research article
- Open Access
- Published: 18 August 2008
- Article: 38
-
An integrative genomic approach reveals coordinated expression of intronic miR-335, miR-342, and miR-561 with deregulated host genes in multiple myeloma
Authors (first, second and last of 8)
- Domenica Ronchetti
- Marta Lionetti
- Antonino Neri
- Content type: Research article
- Open Access
- Published: 13 August 2008
- Article: 37
-
Differential expression of genes mapping to recurrently abnormal chromosomal regions characterize neuroblastic tumours with distinct ploidy status
Authors (first, second and last of 15)
- Cinzia Lavarino
- Idoia Garcia
- Jaume Mora
- Content type: Research article
- Open Access
- Published: 13 August 2008
- Article: 36
-
Role of Caveolin 1, E-Cadherin, Enolase 2 and PKCalpha on resistance to methotrexate in human HT29 colon cancer cells
Authors (first, second and last of 5)
- Elisabet Selga
- Cristina Morales
- Carlos J Ciudad
- Content type: Research article
- Open Access
- Published: 11 August 2008
- Article: 35
-
Influence of monolayer, spheroid, and tumor growth conditions on chromosome 3 gene expression in tumorigenic epithelial ovarian cancer cell lines
Authors (first, second and last of 6)
- Neal AL Cody
- Magdalena Zietarska
- Patricia N Tonin
- Content type: Research article
- Open Access
- Published: 07 August 2008
- Article: 34
-
An approach to analyse the specific impact of rapamycin on mRNA-ribosome association
Authors (first, second and last of 5)
- Raphael Genolet
- Tanguy Araud
- Joseph Curran
- Content type: Technical advance
- Open Access
- Published: 01 August 2008
- Article: 33
-
My sister's keeper?: genomic research and the identifiability of siblings
Authors (first, second and last of 4)
- Christopher A Cassa
- Brian Schmidt
- Kenneth D Mandl
- Content type: Research article
- Open Access
- Published: 25 July 2008
- Article: 32
-
Increased cell motility and invasion upon knockdown of lipolysis stimulated lipoprotein receptor (LSR) in SW780 bladder cancer cells
Authors (first, second and last of 7)
- Malene Herbsleb
- Karin Birkenkamp-Demtroder
- Lars Dyrskjøt
- Content type: Research article
- Open Access
- Published: 22 July 2008
- Article: 31
-
Gene expression in periodontal tissues following treatment
Authors (first, second and last of 5)
- Thomas Beikler
- Ulrike Peters
- Thomas F Flemmig
- Content type: Research article
- Open Access
- Published: 07 July 2008
- Article: 30
-
Characterization of global transcription profile of normal and HPV-immortalized keratinocytes and their response to TNF treatment
Authors (first, second and last of 9)
- Lara Termini
- Enrique Boccardo
- Luiz FL Reis
- Content type: Research article
- Open Access
- Published: 27 June 2008
- Article: 29
-
Pathway analysis reveals functional convergence of gene expression profiles in breast cancer
Authors
- Ronglai Shen
- Arul M Chinnaiyan
- Debashis Ghosh
- Content type: Research article
- Open Access
- Published: 27 June 2008
- Article: 28
-
Molecular analysis of the vaginal response to estrogens in the ovariectomized rat and postmenopausal woman
Authors (first, second and last of 12)
- Scott A Jelinsky
- Sung E Choe
- Heather A Harris
- Content type: Research article
- Open Access
- Published: 25 June 2008
- Article: 27
-
Whole genome assessment of the retinal response to diabetes reveals a progressive neurovascular inflammatory response
Authors (first, second and last of 11)
- Robert M Brucklacher
- Kruti M Patel
- Willard M Freeman
- Content type: Research article
- Open Access
- Published: 13 June 2008
- Article: 26
-
Genome wide SNP comparative analysis between EGFR and KRAS mutated NSCLC and characterization of two models of oncogenic cooperation in non-small cell lung carcinoma
Authors (first, second and last of 10)
- Hélène Blons
- Karine Pallier
- Pierre Laurent-Puig
- Content type: Research article
- Open Access
- Published: 12 June 2008
- Article: 25
-
Genotyping panel for assessing response to cancer chemotherapy
Authors (first, second and last of 5)
- Zunyan Dai
- Audrey C Papp
- Wolfgang Sadee
- Content type: Technical advance
- Open Access
- Published: 11 June 2008
- Article: 24
-
A genome-wide search replicates evidence of a quantitative trait locus for circulating angiotensin I-converting enzyme (ACE) unlinked to the ACE gene
Authors (first, second and last of 7)
- Colin A McKenzie
- Xiaofeng Zhu
- Richard S Cooper
- Content type: Research article
- Open Access
- Published: 10 June 2008
- Article: 23
-
Worldwide population differentiation at disease-associated SNPs
Authors (first, second and last of 5)
- Sean Myles
- Dan Davison
- Nic Timpson
- Content type: Research article
- Open Access
- Published: 04 June 2008
- Article: 22
-
Association of ABCB1genetic variants with renal function in Africans and in Caucasians
Authors (first, second and last of 13)
- Murielle Bochud
- Chin B Eap
- Michel Burnier
- Content type: Research article
- Open Access
- Published: 02 June 2008
- Article: 21
-
Generation of a non-small cell lung cancer transcriptome microarray
Authors (first, second and last of 12)
- Austin Tanney
- Gavin R Oliver
- Karl A Mulligan
- Content type: Research article
- Open Access
- Published: 30 May 2008
- Article: 20
-
Generation of a genomic tiling array of the human Major Histocompatibility Complex (MHC) and its application for DNA methylation analysis
Authors (first, second and last of 15)
- Eleni M Tomazou
- Vardhman K Rakyan
- Stephan Beck
- Content type: Research article
- Open Access
- Published: 30 May 2008
- Article: 19
-
Whole genome identification of Mycobacterium tuberculosisvaccine candidates by comprehensive data mining and bioinformatic analyses
Authors (first, second and last of 5)
- Anat Zvi
- Naomi Ariel
- Avigdor Shafferman
- Content type: Research article
- Open Access
- Published: 28 May 2008
- Article: 18
-
Pro-neural transcription factors as cancer markers
Authors (first, second and last of 9)
- Maria Vias
- Charlie E Massie
- Ian G Mills
- Content type: Research article
- Open Access
- Published: 19 May 2008
- Article: 17
-
Investigating the complex genetic architecture of ankle-brachial index, a measure of peripheral arterial disease, in non-Hispanic whites
Authors (first, second and last of 5)
- Sharon LR Kardia
- M Todd Greene
- Iftikhar J Kullo
- Content type: Research article
- Open Access
- Published: 15 May 2008
- Article: 16
-
Classification of human cancers based on DNA copy number amplification modeling
Authors (first, second and last of 5)
- Samuel Myllykangas
- Jarkko Tikka
- Jaakko Hollmén
- Content type: Research article
- Open Access
- Published: 14 May 2008
- Article: 15