Bioinformatic and algorithmical studies

In this topical collection (156 articles)

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1. Research article

   Meta-analysis of prostate cancer gene expression data identifies a novel discriminatory signature enriched for glycosylating enzymes

   Stefan J Barfeld, Phil East, Verena Zuber, Ian G Mills Article:513

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2. Software

   Detecting copy number variation in next generation sequencing data from diagnostic gene panels

   Ashish Kumar Singh, Maren Fridtjofsen Olsen… Article:214

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3. Software

   Genome analysis and knowledge-driven variant interpretation with TGex

   Dvir Dahary, Yaron Golan, Yaron Mazor, Ofer Zelig, Ruth Barshir… Article:200

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4. Research article

   Characterization of DNA lesions associated with cell-free DNA by targeted deep sequencing

   Seung-Ho Shin, Woong-Yang Park, Donghyun Park Article:192

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5. Software

   Genepanel.iobio - an easy to use web tool for generating disease- and phenotype-associated gene lists

   Aditya Ekawade, Matt Velinder, Alistair Ward, Tonya DiSera… Article:190

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6. Case report

   Identification of KRAS mutation in a patient with linear nevus sebaceous syndrome: a case report

   Chun Pan, Xiaowei Zhou, Anlan Hong, Fang Fang, Yan Wang Article:188

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7. Research article

   Identification of LINC02310 as an enhancer in lung adenocarcinoma and investigation of its regulatory network via comprehensive analyses

   Wenyuan Zhao, Jun Wang, Qingxi Luo, Wei Peng, Bin Li, Lei Wang… Article:185

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8. Research article

   Identification of contributing genes of Huntington’s disease by machine learning

   Jack Cheng, Hsin-Ping Liu, Wei-Yong Lin, Fuu-Jen Tsai Article:176

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9. Software

   MySeq: privacy-protecting browser-based personal Genome analysis for genomics education and exploration

   Michael D. Linderman, Leo McElroy, Laura Chang Article:172

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10. Research Article

    Identification and ranking of recurrent neo-epitopes in cancer

    Eric Blanc, Manuel Holtgrewe, Arunraj Dhamodaran… Article:171

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11. Research article

    Novel missense mutation of SASH1 in a Chinese family with dyschromatosis universalis hereditaria

    Lu Cao, Ruixue Zhang, Liang Yong, Shirui Chen, Hui Zhang… Article:168

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12. Technical advance

    Elucidation of molecular links between obesity and cancer through microRNA regulation

    Haluk Dogan, Jiang Shu, Zeynep Hakguder, Zheng Xu, Juan Cui Article:161

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13. Research Article

    Significant random signatures reveals new biomarker for breast cancer

    Elnaz Saberi Ansar, Changiz Eslahchii, Mahsa Rahimi… Article:160

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14. Research article

    A comparison of machine learning classifiers for dementia with Lewy bodies using miRNA expression data

    Daichi Shigemizu, Shintaro Akiyama, Yuya Asanomi… Article:150

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15. Research article

    Exonic variants undergoing allele-specific selection in cancers

    Qiyuan Li, Yuanyuan Zeng, Janet Wang, Hongkun Fang, Jintao Guo… Article:142

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16. Research article

    The similarity of inherited diseases (II): clinical and biological similarity between the phenotypic series

    Alessio Gamba, Mario Salmona, Laura Cantù, Gianfranco Bazzoni Article:139

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17. Research article

    Whole-exome sequencing reveals potential mechanisms of drug resistance to FGFR3-TACC3 targeted therapy and subsequent drug selection: towards a personalized medicine

    Zhou Tong, Cong Yan, Yu-An Dong, Ming Yao, Hangyu Zhang, Lulu Liu… Article:138

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18. Technical advance

    Deconvolution of transcriptomes and miRNomes by independent component analysis provides insights into biological processes and clinical outcomes of melanoma patients

    Petr V. Nazarov, Anke K. Wienecke-Baldacchino, Andrei Zinovyev… Article:132

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19. Research article

    Stoichioproteomics reveal oxygen usage bias, key proteins and pathways in glioma

    Yongqin Yin, Bo Li, Kejie Mou, Muhammad T. Khan, Aman C. Kaushik… Article:125

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20. Technical advance

    Machine learning based refined differential gene expression analysis of pediatric sepsis

    Mostafa Abbas, Yasser EL-Manzalawy Article:122

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