Volume 15, supplement issue 6, October 2014

Proceedings of the Twelfth Annual Research in Computational Molecular Biology (RECOMB) Satellite Workshop on Comparative Genomics

Issue editors

Laxmi Parida
Gurinder Atwal
Bud Mishra

21 articles in this issue

Proceedings of The Twelfth Annual RECOMB Comparative Genomics Conference

Authors
- Laxmi Parida
- Gurinder Atwal
- Bud Mishra
- Content type: Introduction
- Open Access
- Published: 17 October 2014
- Article: I1
Near-medians that avoid the corners; a combinatorial probability approach

Authors
- Caroline Anne Larlee
- Chunfang Zheng
- David Sankoff
- Content type: Research
- Open Access
- Published: 17 October 2014
- Article: S1
Identifying gene clusters by discovering common intervals in indeterminate strings

Authors (first, second and last of 4)
- Daniel Doerr
- Jens Stoye
- Katharina Jahn
- Content type: Research
- Open Access
- Published: 17 October 2014
- Article: S2
Sets of medians in the non-geodesic pseudometric space of unsigned genomes with breakpoints

Authors
- Arash Jamshidpey
- Aryo Jamshidpey
- David Sankoff
- Content type: Research
- Open Access
- Published: 17 October 2014
- Article: S3
Open adjacencies and k-breaks: detecting simultaneous rearrangements in cancer genomes

Authors
- Caleb Weinreb
- Layla Oesper
- Benjamin J Raphael
- Content type: Research
- Open Access
- Published: 17 October 2014
- Article: S4
Gene order alignment on trees with multiOrthoAlign

Authors
- Billel Benzaid
- Nadia El-Mabrouk
- Content type: Research
- Open Access
- Published: 17 October 2014
- Article: S5
What is the difference between the breakpoint graph and the de Bruijn graph?

Authors
- Yu Lin
- Sergey Nurk
- Pavel A Pevzner
- Content type: Research
- Open Access
- Published: 17 October 2014
- Article: S6
Disk covering methods improve phylogenomic analyses

Authors
- Md Shamsuzzoha Bayzid
- Tyler Hunt
- Tandy Warnow
- Content type: Research
- Open Access
- Published: 17 October 2014
- Article: S7
Gene families as soft cliques with backbones: Amborellacontrasted with other flowering plants

Authors (first, second and last of 5)
- Chunfang Zheng
- Alexey Kononenko
- David Sankoff
- Content type: Research
- Open Access
- Published: 17 October 2014
- Article: S8
Robustness of birth-death and gain models for inferring evolutionary events

Authors
- Maureen Stolzer
- Larry Wasserman
- Dannie Durand
- Content type: Research
- Open Access
- Published: 17 October 2014
- Article: S9
Explaining evolution via constrained persistent perfect phylogeny

Authors (first, second and last of 4)
- Paola Bonizzoni
- Anna Paola Carrieri
- Gabriella Trucco
- Content type: Research
- Open Access
- Published: 17 October 2014
- Article: S10
BBCA: Improving the scalability of *BEAST using random binning

Authors
- Théo Zimmermann
- Siavash Mirarab
- Tandy Warnow
- Content type: Research
- Open Access
- Published: 17 October 2014
- Article: S11
Orthology and paralogy constraints: satisfiability and consistency

Authors
- Manuel Lafond
- Nadia El-Mabrouk
- Content type: Research
- Open Access
- Published: 17 October 2014
- Article: S12
Properties and determinants of codon decoding time distributions

Authors
- Alexandra Dana
- Tamir Tuller
- Content type: Research
- Open Access
- Published: 17 October 2014
- Article: S13
Estimation of prokaryotic supergenome size and composition from gene frequency distributions

Authors
- Alexander E Lobkovsky
- Yuri I Wolf
- Eugene V Koonin
- Content type: Research
- Open Access
- Published: 17 October 2014
- Article: S14
Recombination-aware alignment of diploid individuals

Authors
- Veli Mäkinen
- Daniel Valenzuela
- Content type: Research
- Open Access
- Published: 17 October 2014
- Article: S15
A meta-approach for improving the prediction and the functional annotation of ortholog groups

Authors
- Cécile Pereira
- Alain Denise
- Olivier Lespinet
- Content type: Research
- Open Access
- Published: 17 October 2014
- Article: S16
Viral diversity and clonal evolution from unphased genomic data

Authors (first, second and last of 11)
- Hossein Khiabanian
- Zachary Carpenter
- Raul Rabadan
- Content type: Research
- Open Access
- Published: 17 October 2014
- Article: S17
Comparative exomics of Phalariscultivars under salt stress

Authors (first, second and last of 10)
- Niina Haiminen
- Manfred Klaas
- Laxmi Parida
- Content type: Research
- Open Access
- Published: 17 October 2014
- Article: S18
Gene expression and fractionation resistance

Authors
- Eric CH Chen
- David Sankoff
- Content type: Research
- Open Access
- Published: 17 October 2014
- Article: S19
Estimating the information value of polymorphic sites using pooled sequences

Authors
- Ketil Malde
- Content type: Research
- Open Access
- Published: 17 October 2014
- Article: S20

Volume 15, supplement issue 6, October 2014

Proceedings of the Twelfth Annual Research in Computational Molecular Biology (RECOMB) Satellite Workshop on Comparative Genomics

Proceedings of The Twelfth Annual RECOMB Comparative Genomics Conference

Near-medians that avoid the corners; a combinatorial probability approach

Identifying gene clusters by discovering common intervals in indeterminate strings

Sets of medians in the non-geodesic pseudometric space of unsigned genomes with breakpoints

Open adjacencies and k-breaks: detecting simultaneous rearrangements in cancer genomes

Gene order alignment on trees with multiOrthoAlign

What is the difference between the breakpoint graph and the de Bruijn graph?

Disk covering methods improve phylogenomic analyses

Gene families as soft cliques with backbones: Amborellacontrasted with other flowering plants

Robustness of birth-death and gain models for inferring evolutionary events

Explaining evolution via constrained persistent perfect phylogeny

BBCA: Improving the scalability of *BEAST using random binning

Orthology and paralogy constraints: satisfiability and consistency

Properties and determinants of codon decoding time distributions

Estimation of prokaryotic supergenome size and composition from gene frequency distributions

Recombination-aware alignment of diploid individuals

A meta-approach for improving the prediction and the functional annotation of ortholog groups

Viral diversity and clonal evolution from unphased genomic data

Comparative exomics of Phalariscultivars under salt stress

Gene expression and fractionation resistance

Estimating the information value of polymorphic sites using pooled sequences

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Volume 15, supplement issue 6, October 2014

Proceedings of the Twelfth Annual Research in Computational Molecular Biology (RECOMB) Satellite Workshop on Comparative Genomics

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