Volume 11, issue 1, December 2010
731 articles in this issue
-
-
Transcriptome sequencing in an ecologically important tree species: assembly, annotation, and marker discovery
Authors (first, second and last of 5)
- Thomas L Parchman
- Katherine S Geist
- C Alex Buerkle
- Content type: Research article
- Open Access
- Published: 16 March 2010
- Article: 180
-
Characterization of the ovine ribosomal protein SA gene and its pseudogenes
Authors (first, second and last of 8)
- Alice Van den Broeke
- Mario Van Poucke
- Luc J Peelman
- Content type: Research article
- Open Access
- Published: 16 March 2010
- Article: 179
-
Co-expression of neighbouring genes in Arabidopsis: separating chromatin effects from direct interactions
Authors
- Wei-Hua Chen
- Juliette de Meaux
- Martin J Lercher
- Content type: Research article
- Open Access
- Published: 16 March 2010
- Article: 178
-
Phylogenetic analysis of fungal ABC transporters
Authors
- Andriy Kovalchuk
- Arnold JM Driessen
- Content type: Research article
- Open Access
- Published: 16 March 2010
- Article: 177
-
The embryonic genes Dkk3, Hoxd8, Hoxd9 and Tbx1 identify muscle types in a diet-independent and fiber-type unrelated way
Authors (first, second and last of 6)
- Janneke de Wilde
- Martijn FM Hulshof
- Edwin CM Mariman
- Content type: Research article
- Open Access
- Published: 15 March 2010
- Article: 176
-
Systematic analysis of off-target effects in an RNAi screen reveals microRNAs affecting sensitivity to TRAIL-induced apoptosis
Authors (first, second and last of 4)
- Ian Sudbery
- Anton J Enright
- Ian Dunham
- Content type: Research article
- Open Access
- Published: 15 March 2010
- Article: 175
-
QTL mapping for Mediterranean corn borer resistance in European flint germplasm using recombinant inbred lines
Authors (first, second and last of 4)
- Bernardo Ordas
- Rosa A Malvar
- Ana Butron
- Content type: Research article
- Open Access
- Published: 15 March 2010
- Article: 174
-
Expression profile of cuticular genes of silkworm, Bombyx mori
Authors (first, second and last of 4)
- Jiubo Liang
- Liang Zhang
- Ningjia He
- Content type: Research article
- Open Access
- Published: 15 March 2010
- Article: 173
-
Myosin individualized: single nucleotide polymorphisms in energy transduction
Authors (first, second and last of 4)
- Thomas P Burghardt
- Kevin L Neff
- Katalin Ajtai
- Content type: Research article
- Open Access
- Published: 15 March 2010
- Article: 172
-
Whole genome evaluation of horizontal transfers in the pathogenic fungus Aspergillus fumigatus
Authors
- Ludovic V Mallet
- Jennifer Becq
- Patrick Deschavanne
- Content type: Research article
- Open Access
- Published: 12 March 2010
- Article: 171
-
The RST and PARP-like domain containing SRO protein family: analysis of protein structure, function and conservation in land plants
Authors (first, second and last of 8)
- Pinja Jaspers
- Kirk Overmyer
- Jaakko Kangasjärvi
- Content type: Research article
- Open Access
- Published: 12 March 2010
- Article: 170
-
A sequence motif enriched in regions bound by the Drosophila dosage compensation complex
Authors (first, second and last of 4)
- Miguel Gallach
- Vicente Arnau
- Ignacio Marín
- Content type: Research article
- Open Access
- Published: 12 March 2010
- Article: 169
-
Transcriptome survey of the anhydrobiotic tardigrade Milnesium tardigradum in comparison with Hypsibius dujardini and Richtersius coronifer
Authors (first, second and last of 9)
- Brahim Mali
- Markus A Grohme
- Marcus Frohme
- Content type: Research article
- Open Access
- Published: 12 March 2010
- Article: 168
-
Large-scale transcriptome data reveals transcriptional activity of fission yeast LTR retrotransposons
Authors
- Tobias Mourier
- Eske Willerslev
- Content type: Research article
- Open Access
- Published: 12 March 2010
- Article: 167
-
TC-motifs at the TATA-box expected position in plant genes: a novel class of motifs involved in the transcription regulation
Authors
- Virginie Bernard
- Véronique Brunaud
- Alain Lecharny
- Content type: Research article
- Open Access
- Published: 12 March 2010
- Article: 166
-
Depletion of the non-coding regulatory 6S RNA in E. coli causes a surprising reduction in the expression of the translation machinery
Authors (first, second and last of 4)
- Thomas Neusser
- Tino Polen
- Rolf Wagner
- Content type: Research article
- Open Access
- Published: 11 March 2010
- Article: 165
-
Comparative genomics and proteomics of Helicobacter mustelae, an ulcerogenic and carcinogenic gastric pathogen
Authors (first, second and last of 11)
- Paul W O'Toole
- William J Snelling
- Stephen D Bentley
- Content type: Research article
- Open Access
- Published: 10 March 2010
- Article: 164
-
Improvement of tissue preparation for laser capture microdissection: application for cell type-specific miRNA expression profiling in colorectal tumors
Authors (first, second and last of 7)
- Shuyang Wang
- Lei Wang
- Hongguang Zhu
- Content type: Methodology article
- Open Access
- Published: 10 March 2010
- Article: 163
-
Transcriptional and pathway analysis in the hypothalamus of newly hatched chicks during fasting and delayed feeding
Authors (first, second and last of 7)
- Stacy E Higgins
- Laura E Ellestad
- Tom E Porter
- Content type: Research article
- Open Access
- Published: 09 March 2010
- Article: 162
-
Functional annotation of novel lineage-specific genes using co-expression and promoter analysis
Authors (first, second and last of 4)
- Charu G Kumar
- Robin E Everts
- Harris A Lewin
- Content type: Research article
- Open Access
- Published: 09 March 2010
- Article: 161
-
Transcriptome analysis of reproductive tissue and intrauterine developmental stages of the tsetse fly (Glossina morsitans morsitans)
Authors (first, second and last of 5)
- Geoffrey M Attardo
- José MC Ribeiro
- Serap Aksoy
- Content type: Research article
- Open Access
- Published: 09 March 2010
- Article: 160
-
Recombinational landscape of porcine X chromosome and individual variation in female meiotic recombination associated with haplotypes of Chinese pigs
Authors (first, second and last of 8)
- Junwu Ma
- Nathalie Iannuccelli
- Denis Milan
- Content type: Research article
- Open Access
- Published: 09 March 2010
- Article: 159
-
From QTL to candidate gene: Genetical genomics of simple and complex traits in potato using a pooling strategy
Authors (first, second and last of 7)
- Bjorn Kloosterman
- Marian Oortwijn
- Christian WB Bachem
- Content type: Research article
- Open Access
- Published: 08 March 2010
- Article: 158
-
Transcriptome profiling of a Sinorhizobium meliloti fadD mutant reveals the role of rhizobactin 1021 biosynthesis and regulation genes in the control of swarming
Authors (first, second and last of 8)
- Joaquina Nogales
- Ana Domínguez-Ferreras
- María J Soto
- Content type: Research article
- Open Access
- Published: 08 March 2010
- Article: 157
-
Discovery and application of insertion-deletion (INDEL) polymorphisms for QTL mapping of early life-history traits in Atlantic salmon
Authors (first, second and last of 5)
- Anti Vasemägi
- Riho Gross
- Craig R Primmer
- Content type: Methodology article
- Open Access
- Published: 08 March 2010
- Article: 156
-
Unified translation repression mechanism for microRNAs and upstream AUGs
Authors
- Subramanian S Ajay
- Brian D Athey
- Inhan Lee
- Content type: Research article
- Open Access
- Published: 05 March 2010
- Article: 155
-
Comprehensive analysis of MHC class I genes from the U-, S-, and Z-lineages in Atlantic salmon
Authors (first, second and last of 8)
- Morten F Lukacs
- Håvard Harstad
- Unni Grimholt
- Content type: Research article
- Open Access
- Published: 05 March 2010
- Article: 154
-
Chemogenomic and transcriptome analysis identifies mode of action of the chemosensitizing agent CTBT (7-chlorotetrazolo[5,1-c]benzo[1,2,4]triazine)
Authors (first, second and last of 8)
- Monika Batova
- Vlasta Klobucnikova
- Christoph Schüller
- Content type: Research article
- Open Access
- Published: 04 March 2010
- Article: 153
-
Genome dynamics of Bartonella grahamii in micro-populations of woodland rodents
Authors (first, second and last of 7)
- Eva C Berglund
- Christian Ehrenborg
- Siv GE Andersson
- Content type: Research article
- Open Access
- Published: 04 March 2010
- Article: 152
-
Promiscuity of enhancer, coding and non-coding transcription functions in ultraconserved elements
Authors (first, second and last of 6)
- Danilo Licastro
- Vincenzo A Gennarino
- Elia Stupka
- Content type: Research article
- Open Access
- Published: 04 March 2010
- Article: 151
-
Genome-wide transcriptome analysis of the transition from primary to secondary stem development in Populus trichocarpa
Authors
- Palitha Dharmawardhana
- Amy M Brunner
- Steven H Strauss
- Content type: Research article
- Open Access
- Published: 04 March 2010
- Article: 150
-
Transcribed-ultra conserved region expression profiling from low-input total RNA
Authors (first, second and last of 7)
- Paola Scaruffi
- Sara Stigliani
- Gian Paolo Tonini
- Content type: Methodology article
- Open Access
- Published: 03 March 2010
- Article: 149
-
MicroRNAs of Bombyx mori identified by Solexa sequencing
Authors (first, second and last of 6)
- Shiping Liu
- Dong Li
- Qingyou Xia
- Content type: Research article
- Open Access
- Published: 03 March 2010
- Article: 148
-
Conservation and divergence of known apicomplexan transcriptional regulons
Authors
- Kobby Essien
- Christian J Stoeckert Jr
- Content type: Research article
- Open Access
- Published: 03 March 2010
- Article: 147
-
Distribution of candidate genes for experimentally induced arthritis in rats
Authors
- Lars Andersson
- Fredrik Ståhl
- Content type: Research article
- Open Access
- Published: 02 March 2010
- Article: 146
-
Genome-wide transcription factor binding site/promoter databases for the analysis of gene sets and co-occurrence of transcription factor binding motifs
Authors
- Srinivas Veerla
- Markus Ringnér
- Mattias Höglund
- Content type: Methodology article
- Open Access
- Published: 01 March 2010
- Article: 145
-
Whole genome analysis of p38 SAPK-mediated gene expression upon stress
Authors (first, second and last of 11)
- Isabel Ferreiro
- Manel Joaquin
- Francesc Posas
- Content type: Research article
- Open Access
- Published: 01 March 2010
- Article: 144
-
Chloroplast genome sequence of the moss Tortula ruralis: gene content, polymorphism, and structural arrangement relative to other green plant chloroplast genomes
Authors (first, second and last of 10)
- Melvin J Oliver
- Andrew G Murdock
- Kenneth G Karol
- Content type: Research article
- Open Access
- Published: 27 February 2010
- Article: 143
-
TobEA: an atlas of tobacco gene expression from seed to senescence
Authors (first, second and last of 7)
- Kieron D Edwards
- Aureliano Bombarely
- Louise Jones
- Content type: Research article
- Open Access
- Published: 26 February 2010
- Article: 142
-
Hyper-expansion of large DNA segments in the genome of kuruma shrimp, Marsupenaeus japonicus
Authors (first, second and last of 14)
- Takashi Koyama
- Shuichi Asakawa
- Ikuo Hirono
- Content type: Research article
- Open Access
- Published: 26 February 2010
- Article: 141
-
Gene-specific FACS sorting method for target selection in high-throughput amplicon sequencing
Authors (first, second and last of 4)
- Julia Sandberg
- Marten Neiman
- Joakim Lundeberg
- Content type: Methodology article
- Open Access
- Published: 26 February 2010
- Article: 140
-
Comparative assessment of methods for estimating individual genome-wide homozygosity-by-descent from human genomic data
Authors (first, second and last of 13)
- Ozren Polašek
- Caroline Hayward
- Anne-Louise Leutenegger
- Content type: Research article
- Open Access
- Published: 25 February 2010
- Article: 139
-
Escherichia coli infection induces distinct local and systemic transcriptome responses in the mammary gland
Authors (first, second and last of 8)
- Simone Mitterhuemer
- Wolfram Petzl
- Helmut Blum
- Content type: Research article
- Open Access
- Published: 25 February 2010
- Article: 138
-
Genome-wide analysis of aberrant methylation in human breast cancer cells using methyl-DNA immunoprecipitation combined with high-throughput sequencing
Authors (first, second and last of 5)
- Yoshinao Ruike
- Yukako Imanaka
- Gozoh Tsujimoto
- Content type: Research article
- Open Access
- Published: 25 February 2010
- Article: 137
-
Flux of transcript patterns during soybean seed development
Authors
- Sarah I Jones
- Delkin O Gonzalez
- Lila O Vodkin
- Content type: Research article
- Open Access
- Published: 24 February 2010
- Article: 136
-
A consensus linkage map of the grass carp (Ctenopharyngodon idella) based on microsatellites and SNPs
Authors (first, second and last of 7)
- Jun Hong Xia
- Feng Liu
- Gen Hua Yue
- Content type: Research article
- Open Access
- Published: 24 February 2010
- Article: 135
-
Correcting for intra-experiment variation in Illumina BeadChip data is necessary to generate robust gene-expression profiles
Authors (first, second and last of 9)
- Robert R Kitchen
- Vicky S Sabine
- John MS Bartlett
- Content type: Research article
- Open Access
- Published: 24 February 2010
- Article: 134
-
Comparative analysis of fungal protein kinases and associated domains
Authors (first, second and last of 4)
- Idit Kosti
- Yael Mandel-Gutfreund
- Benjamin A Horwitz
- Content type: Research article
- Open Access
- Published: 24 February 2010
- Article: 133
-
Pediatric primary central nervous system germ cell tumors of different prognosis groups show characteristic miRNome traits and chromosome copy number variations
Authors (first, second and last of 8)
- Hsei-Wei Wang
- Yu-Hsuan Wu
- Tai-Tong Wong
- Content type: Research article
- Open Access
- Published: 24 February 2010
- Article: 132