Volume 11, issue 1, December 2010
731 articles in this issue
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Genome wide scan for quantitative trait loci affecting tick resistance in cattle (Bos taurus × Bos indicus)
Authors (first, second and last of 14)
- Marco Antonio Machado
- Ana Luisa S Azevedo
- Rui S Verneque
- Content type: Research article
- Open Access
- Published: 30 April 2010
- Article: 280
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Salmo salar and Esox lucius full-length cDNA sequences reveal changes in evolutionary pressures on a post-tetraploidization genome
Authors (first, second and last of 12)
- Jong S Leong
- Stuart G Jantzen
- Ben F Koop
- Content type: Research article
- Open Access
- Published: 30 April 2010
- Article: 279
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An EST resource for tilapia based on 17 normalized libraries and assembly of 116,899 sequence tags
Authors (first, second and last of 9)
- Bo-Young Lee
- Aimee E Howe
- Thomas D Kocher
- Content type: Research article
- Open Access
- Published: 30 April 2010
- Article: 278
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Genome-wide analysis of tandem repeats in Daphnia pulex - a comparative approach
Authors
- Christoph Mayer
- Florian Leese
- Ralph Tollrian
- Content type: Research article
- Open Access
- Published: 30 April 2010
- Article: 277
This is part of 1 collection: -
A survey of well conserved families of C2H2 zinc-finger genes in Daphnia
Authors
- Arun Seetharam
- Yang Bai
- Gary W Stuart
- Content type: Research article
- Open Access
- Published: 30 April 2010
- Article: 276
This is part of 1 collection: -
Deciphering the porcine intestinal microRNA transcriptome
Authors (first, second and last of 9)
- Soroush Sharbati
- Marc R Friedländer
- Ralf Einspanier
- Content type: Research article
- Open Access
- Published: 30 April 2010
- Article: 275
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Novel methods to identify biologically relevant genes for leukemia and prostate cancer from gene expression profiles
Authors
- Austin H Chen
- Yin-Wu Tsau
- Ching-Heng Lin
- Content type: Methodology article
- Open Access
- Published: 30 April 2010
- Article: 274
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A jackknife-like method for classification and uncertainty assessment of multi-category tumor samples using gene expression information
Authors (first, second and last of 5)
- Wensheng Zhang
- Kelly Robbins
- Romdhane Rekaya
- Content type: Methodology article
- Open Access
- Published: 29 April 2010
- Article: 273
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Microarray analysis of Shigella flexneri-infected epithelial cells identifies host factors important for apoptosis inhibition
Authors (first, second and last of 6)
- Christina S Faherty
- D Scott Merrell
- Anthony T Maurelli
- Content type: Research article
- Open Access
- Published: 29 April 2010
- Article: 272
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Using comparative genomic hybridization to survey genomic sequence divergence across species: a proof-of-concept from Drosophila
Authors (first, second and last of 6)
- Suzy CP Renn
- Heather E Machado
- Hans A Hofmann
- Content type: Methodology article
- Open Access
- Published: 29 April 2010
- Article: 271
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Genomic organization of eukaryotic tRNAs
Authors (first, second and last of 7)
- Clara Bermudez-Santana
- Camille Stephan-Otto Attolini
- Peter F Stadler
- Content type: Research article
- Open Access
- Published: 28 April 2010
- Article: 270
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High-throughput marker discovery in melon using a self-designed oligo microarray
Authors (first, second and last of 9)
- Ron Ophir
- Ravit Eshed
- Amir Sherman
- Content type: Research article
- Open Access
- Published: 28 April 2010
- Article: 269
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EST analysis reveals putative genes involved in glycyrrhizin biosynthesis
Authors (first, second and last of 10)
- Ying Li
- Hong-Mei Luo
- Shi-Lin Chen
- Content type: Research article
- Open Access
- Published: 28 April 2010
- Article: 268
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Fine definition of the pedigree haplotypes of closely related rice cultivars by means of genome-wide discovery of single-nucleotide polymorphisms
Authors (first, second and last of 7)
- Toshio Yamamoto
- Hideki Nagasaki
- Masahiro Yano
- Content type: Research article
- Open Access
- Published: 27 April 2010
- Article: 267
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Differences in transcription between free-living and CO2-activated third-stage larvae of Haemonchus contortus
Authors (first, second and last of 12)
- Cinzia Cantacessi
- Bronwyn E Campbell
- Robin B Gasser
- Content type: Research article
- Open Access
- Published: 27 April 2010
- Article: 266
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Chronic activation of the epithelial immune system of the fruit fly's salivary glands has a negative effect on organismal growth and induces a peculiar set of target genes
Authors
- Ahmed Abdelsadik
- Thomas Roeder
- Content type: Research article
- Open Access
- Published: 26 April 2010
- Article: 265
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Global transcriptome analysis of spore formation in Myxococcus xanthus reveals a locus necessary for cell differentiation
Authors (first, second and last of 5)
- Frank-Dietrich Müller
- Anke Treuner-Lange
- Penelope I Higgs
- Content type: Research article
- Open Access
- Published: 26 April 2010
- Article: 264
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Aryl hydrocarbon receptor (AHR)-regulated transcriptomic changes in rats sensitive or resistant to major dioxin toxicities
Authors (first, second and last of 5)
- Ivy D Moffat
- Paul C Boutros
- Raimo Pohjanvirta
- Content type: Research article
- Open Access
- Published: 26 April 2010
- Article: 263
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De novo sequencing and analysis of the American ginseng root transcriptome using a GS FLX Titanium platform to discover putative genes involved in ginsenoside biosynthesis
Authors (first, second and last of 8)
- Chao Sun
- Ying Li
- Shilin Chen
- Content type: Research article
- Open Access
- Published: 24 April 2010
- Article: 262
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Microcollinearity between autopolyploid sugarcane and diploid sorghum genomes
Authors (first, second and last of 16)
- Jianping Wang
- Bruce Roe
- Ray Ming
- Content type: Research article
- Open Access
- Published: 23 April 2010
- Article: 261
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Origin and fate of pseudogenes in Hemiascomycetes: a comparative analysis
Authors
- Ingrid Lafontaine
- Bernard Dujon
- Content type: Research article
- Open Access
- Published: 22 April 2010
- Article: 260
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Major role for mRNA stability in shaping the kinetics of gene induction
Authors (first, second and last of 4)
- Ran Elkon
- Eitan Zlotorynski
- Reuven Agami
- Content type: Research article
- Open Access
- Published: 21 April 2010
- Article: 259
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Large genomic differences between the morphologically indistinguishable diplomonads Spironucleus barkhanus and Spironucleus salmonicida
Authors (first, second and last of 6)
- Katarina Roxström-Lindquist
- Jon Jerlström-Hultqvist
- Jan O Andersson
- Content type: Research article
- Open Access
- Published: 21 April 2010
- Article: 258
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Core promoter structure and genomic context reflect histone 3 lysine 9 acetylation patterns
Authors (first, second and last of 11)
- Anton Kratz
- Erik Arner
- Carsten O Daub
- Content type: Research article
- Open Access
- Published: 21 April 2010
- Article: 257
This is part of 1 collection: -
Validation of a mouse xenograft model system for gene expression analysis of human acute lymphoblastic leukaemia
Authors (first, second and last of 8)
- Amy L Samuels
- Violet K Peeva
- Ursula R Kees
- Content type: Research article
- Open Access
- Published: 21 April 2010
- Article: 256
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Reconstruction of xylose utilization pathway and regulons in Firmicutes
Authors (first, second and last of 9)
- Yang Gu
- Yi Ding
- Weihong Jiang
- Content type: Research article
- Open Access
- Published: 21 April 2010
- Article: 255
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Genome response to tissue plasminogen activator in experimental ischemic stroke
Authors (first, second and last of 11)
- Glen C Jickling
- Xinhua Zhan
- Frank R Sharp
- Content type: Research article
- Open Access
- Published: 21 April 2010
- Article: 254
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Gene expression changes in mononuclear cells in patients with metabolic syndrome after acute intake of phenol-rich virgin olive oil
Authors (first, second and last of 11)
- Antonio Camargo
- Juan Ruano
- Francisco Perez-Jimenez
- Content type: Research article
- Open Access
- Published: 20 April 2010
- Article: 253
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Haplotyping and copy number estimation of the highly polymorphic human beta-defensin locus on 8p23 by 454 amplicon sequencing
Authors (first, second and last of 9)
- Stefan Taudien
- Marco Groth
- Matthias Platzer
- Content type: Research article
- Open Access
- Published: 19 April 2010
- Article: 252
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Transcriptome sequencing and development of an expression microarray platform for the domestic ferret
Authors (first, second and last of 9)
- Carl E Bruder
- Suxia Yao
- Colleen B Jonsson
- Content type: Research article
- Open Access
- Published: 19 April 2010
- Article: 251
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The DUB/USP17 deubiquitinating enzymes: A gene family within a tandemly repeated sequence, is also embedded within the copy number variable Beta-defensin cluster
Authors
- James F Burrows
- Christopher J Scott
- James A Johnston
- Content type: Research article
- Open Access
- Published: 19 April 2010
- Article: 250
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Small RNA expression and strain specificity in the rat
Authors (first, second and last of 4)
- Sam EV Linsen
- Elzo de Wit
- Edwin Cuppen
- Content type: Research article
- Open Access
- Published: 19 April 2010
- Article: 249
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Comparative gene expression in toxic versus non-toxic strains of the marine dinoflagellate Alexandrium minutum
Authors (first, second and last of 7)
- Ines Yang
- Uwe John
- Allan D Cembella
- Content type: Research article
- Open Access
- Published: 19 April 2010
- Article: 248
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The complete genome of Zunongwangia profunda SM-A87 reveals its adaptation to the deep-sea environment and ecological role in sedimentary organic nitrogen degradation
Authors (first, second and last of 10)
- Qi-Long Qin
- Xi-Ying Zhang
- Yu-Zhong Zhang
- Content type: Research article
- Open Access
- Published: 17 April 2010
- Article: 247
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Discovery and comparative profiling of microRNAs in a sweet orange red-flesh mutant and its wild type
Authors (first, second and last of 8)
- Qiang Xu
- Yuanlong Liu
- Xiuxin Deng
- Content type: Research article
- Open Access
- Published: 17 April 2010
- Article: 246
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A genome-wide survey of sRNAs in the symbiotic nitrogen-fixing alpha-proteobacterium Sinorhizobium meliloti
Authors (first, second and last of 9)
- Jan-Philip Schlüter
- Jan Reinkensmeier
- Anke Becker
- Content type: Research article
- Open Access
- Published: 17 April 2010
- Article: 245
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DNA copy number, including telomeres and mitochondria, assayed using next-generation sequencing
Authors (first, second and last of 11)
- John C Castle
- Matthew Biery
- Christopher K Raymond
- Content type: Methodology article
- Open Access
- Published: 16 April 2010
- Article: 244
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Whole genome assembly of a natto production strain Bacillus subtilis natto from very short read data
Authors (first, second and last of 8)
- Yukari Nishito
- Yasunori Osana
- Yasubumi Sakakibara
- Content type: Research article
- Open Access
- Published: 16 April 2010
- Article: 243
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Finishing genomes with limited resources: lessons from an ensemble of microbial genomes
Authors (first, second and last of 9)
- Niranjan Nagarajan
- Christopher Cook
- Mihai Pop
- Content type: Correspondence
- Open Access
- Published: 16 April 2010
- Article: 242
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Signal pathways JNK and NF-κB, identified by global gene expression profiling, are involved in regulation of TNFα-induced mPGES-1 and COX-2 expression in gingival fibroblasts
Authors (first, second and last of 5)
- Tove Båge
- Johan Lindberg
- Tülay Yucel-Lindberg
- Content type: Research article
- Open Access
- Published: 15 April 2010
- Article: 241
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Genes related to the very early stage of ConA-induced fulminant hepatitis: a gene-chip-based study in a mouse model
Authors (first, second and last of 9)
- Feng Chen
- Hai-Hong Zhu
- Zhi Chen
- Content type: Research article
- Open Access
- Published: 15 April 2010
- Article: 240
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Pyrosequencing-based comparative genome analysis of the nosocomial pathogen Enterococcus faecium and identification of a large transferable pathogenicity island
Authors (first, second and last of 11)
- Willem van Schaik
- Janetta Top
- Rob JL Willems
- Content type: Research article
- Open Access
- Published: 14 April 2010
- Article: 239
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Novel insights into the genomic basis of citrus canker based on the genome sequences of two strains of Xanthomonas fuscans subsp. aurantifolii
Authors (first, second and last of 31)
- Leandro M Moreira
- Nalvo F Almeida Jr
- João C Setubal
- Content type: Research article
- Open Access
- Published: 13 April 2010
- Article: 238
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Thioredoxin and glutathione systems differ in parasitic and free-living platyhelminths
Authors (first, second and last of 6)
- Lucía Otero
- Mariana Bonilla
- Gustavo Salinas
- Content type: Research article
- Open Access
- Published: 13 April 2010
- Article: 237
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A toolkit for rapid gene mapping in the nematode Caenorhabditis briggsae
Authors (first, second and last of 9)
- Daniel C Koboldt
- Julia Staisch
- Bhagwati P Gupta
- Content type: Research article
- Open Access
- Published: 13 April 2010
- Article: 236
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Plasmodium falciparum spermidine synthase inhibition results in unique perturbation-specific effects observed on transcript, protein and metabolite levels
Authors (first, second and last of 9)
- John VW Becker
- Linda Mtwisha
- Dalu T Mancama
- Content type: Research article
- Open Access
- Published: 12 April 2010
- Article: 235
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Evolutionary conservation of essential and highly expressed genes in Pseudomonas aeruginosa
Authors (first, second and last of 6)
- Andreas Dötsch
- Frank Klawonn
- Susanne Häussler
- Content type: Research article
- Open Access
- Published: 09 April 2010
- Article: 234
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A scenario of mitochondrial genome evolution in maize based on rearrangement events
Authors
- Aude Darracq
- Jean-Stéphane Varré
- Pascal Touzet
- Content type: Research article
- Open Access
- Published: 09 April 2010
- Article: 233
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Identification of copy number variations and common deletion polymorphisms in cattle
Authors (first, second and last of 10)
- Joon Seol Bae
- Hyun Sub Cheong
- Hyoung Doo Shin
- Content type: Research article
- Open Access
- Published: 09 April 2010
- Article: 232