Volume 50, issue 1, December 2018
72 articles in this issue
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Dominance and epistatic genetic variances for litter size in pigs using genomic models
Authors (first, second and last of 4)
- Zulma G. Vitezica
- Antonio Reverter
- Andres Legarra
- Content type: Research Article
- Open Access
- Published: 22 December 2018
- Article: 71
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Approximate Bayesian neural networks in genomic prediction
Authors
- Patrik Waldmann
- Content type: Research Article
- Open Access
- Published: 22 December 2018
- Article: 70
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Sequence variation, evolutionary constraint, and selection at the CD163 gene in pigs
Authors (first, second and last of 9)
- Martin Johnsson
- Roger Ros-Freixedes
- John M. Hickey
- Content type: Research Article
- Open Access
- Published: 20 December 2018
- Article: 69
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A novel deletion in KRT75L4 mediates the frizzle trait in a Chinese indigenous chicken
Authors (first, second and last of 16)
- Jing Dong
- Chuan He
- Bingwang Du
- Content type: Short communication
- Open Access
- Published: 20 December 2018
- Article: 68
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Hybrid peeling for fast and accurate calling, phasing, and imputation with sequence data of any coverage in pedigrees
Authors (first, second and last of 5)
- Andrew Whalen
- Roger Ros-Freixedes
- John M. Hickey
- Content type: Research Article
- Open Access
- Published: 18 December 2018
- Article: 67
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Development of genomic predictions for harvest and carcass weight in channel catfish
Authors (first, second and last of 6)
- Andre L. S. Garcia
- Brian Bosworth
- Daniela A. L. Lourenco
- Content type: Research Article
- Open Access
- Published: 14 December 2018
- Article: 66
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Required properties for markers used to calculate unbiased estimates of the genetic correlation between populations
Authors (first, second and last of 4)
- Yvonne C. J. Wientjes
- Mario P. L. Calus
- Piter Bijma
- Content type: Research Article
- Open Access
- Published: 14 December 2018
- Article: 65
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Impact of index hopping and bias towards the reference allele on accuracy of genotype calls from low-coverage sequencing
Authors (first, second and last of 7)
- Roger Ros-Freixedes
- Mara Battagin
- John M. Hickey
- Content type: Research Article
- Open Access
- Published: 13 December 2018
- Article: 64
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Phenotypic and genetic variation in the response of chickens to Eimeria tenella induced coccidiosis
Authors (first, second and last of 14)
- Kay Boulton
- Matthew J. Nolan
- David A. Hume
- Content type: Research Article
- Open Access
- Published: 21 November 2018
- Article: 63
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Impact of rare and low-frequency sequence variants on reliability of genomic prediction in dairy cattle
Authors (first, second and last of 6)
- Qianqian Zhang
- Goutam Sahana
- Mario P. L. Calus
- Content type: Research Article
- Open Access
- Published: 20 November 2018
- Article: 62
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AdaptMap: exploring goat diversity and adaptation
Authors (first, second and last of 11)
- Alessandra Stella
- Ezequiel Luis Nicolazzi
- the AdaptMap Consortium
- Content type: Editorial
- Open Access
- Published: 19 November 2018
- Article: 61
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Quantitative trait loci for resistance to Flavobacterium psychrophilum in rainbow trout: effect of the mode of infection and evidence of epistatic interactions
Authors (first, second and last of 14)
- Clémence Fraslin
- Nicolas Dechamp
- Edwige Quillet
- Content type: Research Article
- Open Access
- Published: 16 November 2018
- Article: 60
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Genome-wide patterns of homozygosity provide clues about the population history and adaptation of goats
Authors (first, second and last of 7)
- Francesca Bertolini
- Tainã Figueiredo Cardoso
- the AdaptMap consortium
- Content type: Research Article
- Open Access
- Published: 19 November 2018
- Article: 59
This is part of 1 collection: -
Genome-wide SNP profiling of worldwide goat populations reveals strong partitioning of diversity and highlights post-domestication migration routes
Authors (first, second and last of 25)
- Licia Colli
- Marco Milanesi
- the AdaptMap Consortium
- Content type: Research Article
- Open Access
- Published: 19 November 2018
- Article: 58
This is part of 1 collection: -
Signatures of selection and environmental adaptation across the goat genome post-domestication
Authors (first, second and last of 25)
- Francesca Bertolini
- Bertrand Servin
- the AdaptMap consortium
- Content type: Research Article
- Open Access
- Published: 19 November 2018
- Article: 57
This is part of 1 collection: -
Patterns of homozygosity in insular and continental goat breeds
Authors (first, second and last of 14)
- Taina F. Cardoso
- Marcel Amills
- The AdaptMap Consortium
- Content type: Research Article
- Open Access
- Published: 19 November 2018
- Article: 56
This is part of 1 collection: -
Functional SNP panel for parentage assessment and assignment in worldwide goat breeds
Authors (first, second and last of 9)
- Andrea Talenti
- Isabelle Palhière
- AdaptMap Consortium
- Content type: Research Article
- Open Access
- Published: 19 November 2018
- Article: 55
This is part of 1 collection: -
Detection of copy number variations in brown and white layers based on genotyping panels with different densities
Authors (first, second and last of 4)
- Wioleta Drobik-Czwarno
- Anna Wolc
- Jack C. M. Dekkers
- Content type: Research Article
- Open Access
- Published: 06 November 2018
- Article: 54
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Semi-parametric estimates of population accuracy and bias of predictions of breeding values and future phenotypes using the LR method
Authors
- Andres Legarra
- Antonio Reverter
- Content type: Research Article
- Open Access
- Published: 06 November 2018
- Article: 53
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Benefits of testing in both bio-secure and production environments in genomic selection breeding programs for commercial broiler chicken
Authors (first, second and last of 7)
- Thinh T. Chu
- Setegn W. Alemu
- Just Jensen
- Content type: Research Article
- Open Access
- Published: 03 November 2018
- Article: 52
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Deflated preconditioned conjugate gradient method for solving single-step BLUP models efficiently
Authors (first, second and last of 4)
- Jérémie Vandenplas
- Herwin Eding
- Cornelis Vuik
- Content type: Research Article
- Open Access
- Published: 03 November 2018
- Article: 51
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Harnessing longitudinal information to identify genetic variation in tolerance of pigs to Porcine Reproductive and Respiratory Syndrome virus infection
Authors (first, second and last of 11)
- Graham Lough
- Andrew Hess
- Andrea Doeschl-Wilson
- Content type: Research Article
- Open Access
- Published: 24 October 2018
- Article: 50
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Genomic prediction for numerically small breeds, using models with pre-selected and differentially weighted markers
Authors (first, second and last of 6)
- Biaty Raymond
- Aniek C. Bouwman
- Roel F. Veerkamp
- Content type: Research Article
- Open Access
- Published: 10 October 2018
- Article: 49
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Genome-wide association scan for heterotic quantitative trait loci in multi-breed and crossbred beef cattle
Authors (first, second and last of 9)
- Everestus C. Akanno
- Liuhong Chen
- Graham S. Plastow
- Content type: Research Article
- Open Access
- Published: 05 October 2018
- Article: 48
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Derivation of the economic value of R0 for macroparasitic diseases and application to sea lice in salmon
Authors (first, second and last of 5)
- Kasper Janssen
- Hans Komen
- Piter Bijma
- Content type: Research Article
- Open Access
- Published: 03 October 2018
- Article: 47
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Genetic selection against intrauterine growth retardation in piglets: a problem at the piglet level with a solution at the sow level
Authors
- Stephanie M. Matheson
- Grant A. Walling
- Sandra A. Edwards
- Content type: Research Article
- Open Access
- Published: 18 September 2018
- Article: 46
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Quantifying genomic connectedness and prediction accuracy from additive and non-additive gene actions
Authors
- Mehdi Momen
- Gota Morota
- Content type: Short communication
- Open Access
- Published: 17 September 2018
- Article: 45
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Assessment of the performance of hidden Markov models for imputation in animal breeding
Authors (first, second and last of 4)
- Andrew Whalen
- Gregor Gorjanc
- John M. Hickey
- Content type: Research Article
- Open Access
- Published: 17 September 2018
- Article: 44
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Misidentification of runs of homozygosity islands in cattle caused by interference with copy number variation or large intermarker distances
Authors (first, second and last of 16)
- Wilson Nandolo
- Yuri T. Utsunomiya
- Johann Sölkner
- Content type: Research Article
- Open Access
- Published: 22 August 2018
- Article: 43
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Estimation of variance components and prediction of breeding values based on group records from varying group sizes
Authors (first, second and last of 7)
- Guosheng Su
- Per Madsen
- Ole F. Christensen
- Content type: Research Article
- Open Access
- Published: 14 August 2018
- Article: 42
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Understanding the potential bias of variance components estimators when using genomic models
Authors
- Beatriz C. D. Cuyabano
- A. Christian Sørensen
- Peter Sørensen
- Content type: Research Article
- Open Access
- Published: 06 August 2018
- Article: 41
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Weighted single-step GWAS and gene network analysis reveal new candidate genes for semen traits in pigs
Authors (first, second and last of 9)
- Daniele B. D. Marques
- John W. M. Bastiaansen
- Paulo S. Lopes
- Content type: Research Article
- Open Access
- Published: 06 August 2018
- Article: 40
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Estimates of genetic trend for single-step genomic evaluations
Authors
- Karin Meyer
- Bruce Tier
- Andrew Swan
- Content type: Research Article
- Open Access
- Published: 03 August 2018
- Article: 39
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The genetic architecture of socially-affected traits: a GWAS for direct and indirect genetic effects on survival time in laying hens showing cannibalism
Authors (first, second and last of 4)
- Tessa Brinker
- Piter Bijma
- Esther D. Ellen
- Content type: Research Article
- Open Access
- Published: 23 July 2018
- Article: 38
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Whole-genome SNP analysis elucidates the genetic structure of Russian cattle and its relationship with Eurasian taurine breeds
Authors (first, second and last of 15)
- Alexander A. Sermyagin
- Arsen V. Dotsev
- Natalia A. Zinovieva
- Content type: Research Article
- Open Access
- Published: 11 July 2018
- Article: 37
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Remapping of the belted phenotype in cattle on BTA3 identifies a multiplication event as the candidate causal mutation
Authors (first, second and last of 8)
- Sophie Rothammer
- Elisabeth Kunz
- Ivica Medugorac
- Content type: Research Article
- Open Access
- Published: 06 July 2018
- Article: 36
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Conservation status and historical relatedness of Italian cattle breeds
Authors (first, second and last of 27)
- Salvatore Mastrangelo
- Elena Ciani
- Fabio Pilla
- Content type: Research Article
- Open Access
- Published: 26 June 2018
- Article: 35
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SNPrune: an efficient algorithm to prune large SNP array and sequence datasets based on high linkage disequilibrium
Authors
- Mario P. L. Calus
- Jérémie Vandenplas
- Content type: Research Article
- Open Access
- Published: 26 June 2018
- Article: 34
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Bayesian estimation of direct and correlated responses to selection on linear or ratio expressions of feed efficiency in pigs
Authors
- Mahmoud Shirali
- Patrick Francis Varley
- Just Jensen
- Content type: Research Article
- Open Access
- Published: 20 June 2018
- Article: 33
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Genome-wide mapping of quantitative trait loci in admixed populations using mixed linear model and Bayesian multiple regression analysis
Authors
- Ali Toosi
- Rohan L. Fernando
- Jack C. M. Dekkers
- Content type: Research Article
- Open Access
- Published: 19 June 2018
- Article: 32
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Weighted single-step genomic BLUP improves accuracy of genomic breeding values for protein content in French dairy goats: a quantitative trait influenced by a major gene
Authors
- Marc Teissier
- Hélène Larroque
- Christèle Robert-Granié
- Content type: Research Article
- Open Access
- Published: 15 June 2018
- Article: 31
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Genome-wide association and genomic prediction of resistance to viral nervous necrosis in European sea bass (Dicentrarchus labrax) using RAD sequencing
Authors (first, second and last of 10)
- Christos Palaiokostas
- Sophie Cariou
- Ross D. Houston
- Content type: Research Article
- Open Access
- Published: 08 June 2018
- Article: 30
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Population structure and genetic diversity of 25 Russian sheep breeds based on whole-genome genotyping
Authors (first, second and last of 11)
- Tatiana E. Deniskova
- Arsen V. Dotsev
- Natalia A. Zinovieva
- Content type: Research Article
- Open Access
- Published: 24 May 2018
- Article: 29
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Genomic prediction of the polled and horned phenotypes in Merino sheep
Authors (first, second and last of 4)
- Naomi Duijvesteijn
- Sunduimijid Bolormaa
- Julius H. J. van der Werf
- Content type: Research Article
- Open Access
- Published: 22 May 2018
- Article: 28
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Utility of whole-genome sequence data for across-breed genomic prediction
Authors (first, second and last of 5)
- Biaty Raymond
- Aniek C. Bouwman
- Roel F. Veerkamp
- Content type: Research Article
- Open Access
- Published: 18 May 2018
- Article: 27
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Using genomic relationship likelihood for parentage assignment
Authors
- Kim E. Grashei
- Jørgen Ødegård
- Theo H. E. Meuwissen
- Content type: Research Article
- Open Access
- Published: 18 May 2018
- Article: 26
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Longitudinal analysis of direct and indirect effects on average daily gain in rabbits using a structured antedependence model
Authors
- Ingrid David
- Juan-Pablo Sánchez
- Miriam Piles
- Content type: Research Article
- Open Access
- Published: 10 May 2018
- Article: 25
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Selective advantage of implementing optimal contributions selection and timescales for the convergence of long-term genetic contributions
Authors (first, second and last of 5)
- David M. Howard
- Ricardo Pong-Wong
- John A. Woolliams
- Content type: Research Article
- Open Access
- Published: 10 May 2018
- Article: 24
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Genetic effects of fatty acid composition in muscle of Atlantic salmon
Authors (first, second and last of 5)
- Siri S. Horn
- Bente Ruyter
- Anna K. Sonesson
- Content type: Research Article
- Open Access
- Published: 02 May 2018
- Article: 23