Abstract
Exact histological clot composition remains unknown. The purpose of this study was to identify the best imaging variables to be extrapolated on clot composition and clarify variability in the imaging of thrombi by non-contrast CT. Using a CT-phantom and covering a wide range of histologies, we analyzed 80 clot analogs with respect to X-ray attenuation at 24 and 48 h after production. The mean, maximum, and minimum HU values for the axial and coronal reconstructions were recorded. Each thrombus underwent a corresponding histological analysis, together with a laboratory analysis of water and iron contents. Decision trees, a type of supervised machine learning, were used to select the primary variable altering attenuation and the best parameter for predicting histology. The decision trees selected red blood cells (RBCs) for correlation with all attenuation parameters (p < 0.001). Conversely, maximum attenuation on axial CT offered the greatest accuracy for discriminating up to four groups of clot histology (p < 0.001). Similar RBC-rich thrombi displayed variable imaging associated with different iron (p = 0.023) and white blood cell contents (p = 0.019). Water content varied among the different histologies but did not in itself account for the differences in attenuation. Independent factors determining clot attenuation were the RBCs (β = 0.33, CI = 0.219–0.441, p < 0.001) followed by the iron content (β = 0.005, CI = 0.0002–0.009, p = 0.042). Our findings suggest that it is possible to extract more and valuable information from NCCT that can be extrapolated to provide insights into clot histological and chemical composition.
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Introduction
Indications for endovascular treatment in acute ischemic stroke are based not only on clinical aspects but also on brain imaging [1,2,3,4,5]. Hence, multimodal brain CT, including non-contrast CT (NCCT), CT angiography, and CT perfusion, are widely used for diagnosis and in selecting patients for therapy.
Recent past studies have shown an association between clot dissolution and IV thrombolysis, especially for hyperdense clots on NCCT [6, 7]. Hyperdense clots are usually, but not always, rich in red blood cells (RBCs) and can usually be removed endovascularly [8,9,10,11,12]. In contrast, isodense clots, detected by NCCT in up to 75% of angiographic occlusions, are the most difficult to treat either pharmacologically or endovascularly and have been correlated with a high fibrin content [6, 13, 14]. Despite treatment, persistent thrombi are not available for examination of their histological features, and in such cases, clot imaging is the only resource for characterization. While clot composition is not currently considered in treatment decision making, it has been speculated that if composition could be known before treatment, it might then play a role in selecting the best endovascular strategy for therapy. Nevertheless, enhanced mechanical thrombectomy decision making before initiating intervention can only become a reality if thrombus characterization by diagnostic imaging improves. The potential to extrapolate clot imaging into histological information will represent a huge step in selecting optimized individualized stroke therapies. This could allow optimization of clot removal techniques and devices, facilitating more successful and shorter interventions and reducing the associated radiation and costs [15, 16].
To extract the maximum information on clot attenuation by NCCT, the measurement methodology and selected parameters must be analyzed. Thinner reconstructions offer greater accuracy for Hounsfield unit (HU) measurements of intracranial clots [14, 17, 18]. The question arises whether the commonly used mean HU represents the ideal parameter for extrapolating NCCT data into histology [12, 13, 17]. In addition, a better understanding is required of the relationship between different histological clot components and X-ray absorption in combination with other “overlooked” blood components such as water or iron, which could affect both attenuation and MRI signal intensity in stroke imaging.
Clot analogs from real blood are the best alternative for the controlled production of human acute ischemic stroke (AIS) thrombi which allow repeatability in clots at discrete points over the wide compositional range of human thrombi. Such analogs are commonly accepted in the field, and they have been used in several in vitro investigations and in the pre-clinical testing of clot extraction devices for mechanical thrombectomy [19,20,21,22]. They have sought to simulate, but have not yet replicated, the complexity of in vivo thrombi, demonstrating less intraclot type variation than occurs in human AIS thrombi [23, 24]. Nevertheless, this homogeneity can be viewed as an essential advantage for studies like ours since every part of the thrombus can be a representative example for the whole. Our aim has been to take an in-depth look at clot composition and its relationship to X-ray absorption.
Thus, covering a wide range of histologies with clot analogs, we examined the histological component (RBCs, fibrin, and white blood cells) that correlates best with different NCCT parameters (maximum, minimum, or mean HU value) to determine attenuation cut-offs capable of predicting histology. Additionally, we analyzed the water and iron contents of clots together with their histological features in an effort to identify the main factors altering attenuation.
Methods
Generalities
Clot analogs of different but predefined composition were analyzed regarding X-ray attenuation on NCCT by applying the usual stroke protocol for patients. In each of the 80 clots evaluated with NCCT, the histological (RBCs, white blood cells (WBCs), and fibrin) and laboratory analyses (water and iron content) were correlated with the images. NCCT was performed at 24 and 48 h from clot production (Fig. 1). After production, clots were stored at 3 °C.
Clot Production
Thrombi were produced by Cerenovus from ovine venous blood [24]. Two production methods were used: manual contraction and platelet-driven contraction. The final content of RBCs in clots was assessed by mixing RBCs with plasma in various concentrations. The hematocrit of the blood mixtures before clotting was as follows: 84%, 20%, 5%, 1%, and 0 for the platelet contraction group, and 20%, 5% 1%, and 0 for the manual contraction group. Further details are presented in the Supplemental materials (Methods).
Histological Analysis
Thrombus material from each of the clots examined by NCCT was immediately fixed in 10% phosphate-buffered formalin. The formalin-fixed clot was embedded in paraffin, cut in 5-μm thick slices, and stained with hematoxylin and eosin and Martius scarlet blue (differentiating fibrin and RBCs). Two of the authors (AJ, senior neuropathologist, and AVG, neuroradiologist) carried out the histological evaluation. Using × 40 magnification, clot cores were photographed (Olympus BX43 microscope + digital camera). ImageJ software (version 1.52a) was used for the quantitative threshold-based automatic measurement of the percentage fibrin, RBCs, and WBCs.
Clinical Laboratory Analysis
Water content was determined by drying the samples at 90 °C using the standard protocol. Iron(III) was measured by spectrometry. A detailed protocol of these analyses is included in the Supplemental material (Methods).
Specimen Preparation and Non-contrast CT Protocol
Before imaging, every thrombus was placed in a single 5-mL Eppendorf tube with 2% agarose. Each thrombus was fixed centrally inside the Eppendorf tubes, avoiding the presence of air. The tubes were placed in a Plexiglass holder which was immersed in a plastic container filled with 2.5 L of water (see Supplemental materials, Figure 1: clot phantoms). In all cases, the phantom was placed at the isocenter of the CT gantry. All clots underwent a 0.4-mm axial non-contrast scan (Somatom Definition Flash, Siemens Healthineers) at the following parameters: pitch 0.55, 125 kVp, 300 mA, rotation time 1 s, caudocranial direction. Image reconstruction was 1-mm slice thickness, kernel H10s, and 1-mm axial and coronal reconstructions were used to measure the clot attenuation.
Imaging Analysis and Measurements
Through consensus, two authors (AGV, senior neuroradiologist, and TR, assistant radiologist) placed regions of interest (ROIs) within the clots. Measurements at the thrombus-agarose or thrombus-plastic tube interface were avoided in all cases. Circular ROIs with a minimum square of 5 mm2 were used for axial reconstructions, and irregular ROIs of at least 40 mm2 for coronal reconstructions. For every axial and coronal ROI, the following values of attenuation were recorded: mean, maximum, and minimum Hounsfield units (six different attenuation parameters per ROI). The background noise was ± 5 HU (quality assurance by water phantom).
Statistical Analysis
All statistical analyses were performed using the SPSS version 25/2017 software (IBM). p values ≤ 0.05 were deemed to indicate a statistically significant difference. All reported p values were two sided. Continuous variables have been described in terms of the mean, standard deviation (SD), median, interquartile range (IQR), and range. The Mann-Whitney U test was used to test the differences in the continuous variables. The relationships between attenuation, histology, and laboratory results were tested using the Spearman correlation (Spearman ρ). Different regression models were compared to identify suitable mathematical models for the association between attenuation and the histology and laboratory analysis variables. The linear model is presented here for reference with the cubic regression results that had the best fit among the different models tested. Results have been presented using the coefficient of determination (R2) and the regression coefficients (β).
Decision trees were used to decide which histological feature was best associated with all the different attenuation parameters at 24 h. The same methodology was used to identify the best attenuation parameter (among the mean, minimum, and maximum HU values) to determine cut-offs for histological prediction. The settings of the decision trees were as follows: maximum depth = 1, minimum splitting size = 10, minimum child size = 5, tenfold cross-validation, alpha = 0.05, maximum split number = 4. This analysis was Bonferroni-adjusted. Changes in attenuation between 24 and 48 h were compared using the Wilcoxon signed-rank test and also analyzed by a generalized linear mixed model with repeated measurements together with RBCs, WBCs, iron, and water.
Results
General Results
The results are presented for the total clots analyzed (n = 80) unless specified otherwise.
Histological Analysis
The median RBC content of the 80 thrombi was 69.9% (IQR = 25.9–92.2, range (0–99.9), mean = 58.2 ± 37.3), fibrin 30% (IQR = 7.5–74.1, range (0–100), mean = 41.6 ± 37.4), and WBCs 0.11% (IQR = 0.01–0.24, range (0–0.98), mean = 0.14 ± 0.15). There was a significant inverse correlation between the percentage RBCs and fibrin (Spearman ρ = − 0.997, p < 0.001). Clots with a higher WBC count correlated with lower fibrin (Spearman ρ = − 0.629, p < 0.001) and higher RBC contents (Spearman ρ = 0.599, p < 0.001).
Laboratory Analysis
The median iron concentration was 992 μg/g (IQR = 423–1655, range (9–3057), mean = 1118 ± 848), and water content (percentage of loss of weight before and after drying) was 70.5% (IQR = 46.5–83.8%, range (14.3–89.5), mean = 65.6 ± 19.4). Thrombi with more RBCs correlated with a higher iron content (Spearman ρ = 0.792, p < 0.001) and less water (Spearman ρ = − 0.624, p < 0.001). Linearly, for every 1% of RBCs, the iron concentration increased by 17.8 μg/g (R2 = 0.615, p < 0.001), and the percentage water decreased by 0.26% (R2 = 0.248, p < 0.001). In the Supplemental materials, Figure 2 illustrates the relationship of RBCs with iron and water contents.
Imaging Analysis
For the attenuation analysis of the clots, a total of 160 ROIs were placed. Table 1 in the Supplemental materials sets forth the mean, maximum, and minimum HU for the axial and coronal CT reconstructions at 24 and 48 h.
Decision Tree Analysis
Machine learning trees were developed, all with the same methodology, to ascertain which histological component could best be classified radiologically and vice versa. First, to determine which histological component could best be classified radiologically, we developed decision trees (24 h clots, n = 57) with RBC, fibrin, WBC, iron, and water contents as independent covariates and the mean, maximum, and minimum HU values in the axial and coronal reconstructions as separate dependent variables (six decision trees, one for each attenuation parameter). The results of the decision trees were identical. In all cases, the RBCs correlated best with each of the six HU parameters (p < 0.001). More specifically, the resulting optimal RBC cut-offs were (1) ≤ 68.35%, (2) 68.35–94.4%, and (3) > 94.4% RBC.
By contrast, to analyze which of the six attenuation parameters offered the greatest accuracy in determining the RBC content, we developed a new decision tree with RBCs as the dependent variable (24 h clots, n = 57). The maximum attenuation values for thrombi on axial NCCT were found to correlate best with the percentage of RBCs. The attenuation cut-offs located at ≤ 43 HU, 43–60 HU, 60–75 HU, and > 75 HU corresponded to mean RBC values of 14%, 37%, 85%, and 96%, respectively (p < .001). Figure 2 depicts this decision tree and the histological and radiological correlations. Figure 3 illustrates our explanation for why the maximum attenuation values were selected best predictors over the rest of the attenuation parameters: the maximum attenuation was more consistent with characterization of the material when changes in ROI position or size occurred. The following analysis therefore focuses on the factors influencing the maximum HU values on axial NCCT.
Factors Altering Clot Attenuation
Joint Analysis of Histology and Chemical Clot Composition
High clot attenuation was correlated with a higher proportion of RBCs (Spearman ρ = 0.894, p < 0.001), WBCs (Spearman ρ = 0.608, p < 0.001), and iron content (Spearman ρ = 0.776, p < 0.001). Lower attenuations were correlated with high fibrin (Spearman ρ = − 0.897, p < 0.001) and water contents (Spearman ρ = − 0.566, p < 0.001). The scatter plots for the above-mentioned variables with regard to maximum attenuation values on axial CT are shown in Fig. 4, and Table 1 lists the factors for predicting clot attenuation when linear models and cubic models were used for reference.
Mathematically, the greater the percentage RBCs, the higher the HU value. Nevertheless, there was a subgroup of clots with nearly 100% RBCs but significantly different attenuations (p < 0.001). Table 2 summarizes the features of these hyperdense clots, divided into two groups (group 1 = ≤ 80 axial maximum HU and group 2 = > 80 axial maximum HU, total n = 20). With similar RBC (p = 0.16) and water contents (p = 0.91), group 2 exhibited higher iron content and percentage WBCs (p = 0.023 and p = 0.019, respectively).
A generalized linear mixed model with repeated measurements (114 measurements on 23 clots at 24 h, 23 clots at 48 h, and 34 clots at 24 and 48 h) for maximum HU values on axial CT as the dependent variable revealed that the RBC content was the most important factor influencing attenuation (β = 0.33, CI = 0.219–0.441, p < 0.001), followed by the iron content (β = 0.005, CI = 0.0002–0.009, p = 0.042). The percentage of total water in the clot (β = − 0.01, CI = − 0.143–0.124, p = 0.89) and the WBCs (β = 7.637, CI = − 8.942–24.217, p = 0.36) did not show any significant effect in this multivariate analysis.
Changes in Attenuation over Time
In general, clots decreased attenuation over time, though it also increased in a minority. In the Supplemental materials, Figure 3 presents the changes in attenuation for the maximum attenuation values on axial CT by the decision tree groups for RBCs. Although in the univariate analysis there were no significant attenuation differences on clots at 24 h vs. 48 h (p = 0.072), repeated measurement analysis of this last multivariable showed a statistically significant decrease of 1.891 HU between 24 h and 48 h (CI = 0.016–3.767, p = 0.048), thus falling within the amplitude of the background noise and, therefore, not clinically significant.
Discussion
This comprehensive study using clot analogs has demonstrated that histology can be correlated with the maximum attenuation values on axial NCCT. Histologically, there was a nearly perfect inverse correlation between the fibrin and RBC contents. However, by using decision tree algorithms, we were able to define four groups of HU explicitly correlated with the percentage RBCs, which was selected as the most relevant variable affecting attenuation. The iron content was the second factor influencing clot imaging. There was a relatively good linear correlation between the percentage RBCs and the iron content. Nevertheless, clots having a similar high percent of RBCs (90–100%) but different attenuations were identified. Further analysis of this subgroup revealed substantial differences in iron but also in WBCs, which could explain the variability in clot hyperattenuation. Overall, the water content in the clots varied among the different histologies. Nevertheless, the multivariate analysis did not show any significant effect on attenuation by water.
Hounsfield units for clots are usually reported as mean values [7, 12, 25]. In this study, we demonstrated that maximum attenuation values from axial NCCT could serve as a better radiological marker of the percentage RBCs than formerly published mean values. Besides, it was also possible to define up to four attenuation groups predicting histology, and this confirms that meaningful information can be derived from simple NCCT results. RBCs were the most critical factor that contributed to clot density, followed by iron content. It needs to be remembered that, outside histology, the exact thrombus composition remains unknown, and typical hematological values (there is 0.5 mg of iron in 1 ml of blood) cannot be extrapolated. Data on the increase in attenuation by iron are limited when compared, for example, with those for calcium, which has been widely analyzed [26, 27]. Generally speaking, the absorption of radiation depends on the atomic number (Z). Thus, on CT imaging, ferric iron (Z = 26) should be still more “dense” than calcium (Z = 20). To our knowledge, only one study from 1976 analyzed the attenuation of blood fractions, showing that 1 mg of iron diluted in 100 ml of water contributed 0.0345 EMI units (0.069 HU, HU = EMI × 2) [28]. Iron is a component of the hemoglobin protein in erythrocytes, and in this sense, our analysis demonstrated a correlation between RBCs and iron and, still more importantly, between iron and the HU values: every 1 μg/g of iron yields an attenuation of 0.017 HU. However, it should be highlighted that there were significant variations in the iron concentrations (1400–2000 μg/g) of RBC-rich clots (95% vs. 98% RBCs), which could explain some of the discrepancies in the attenuation observed. Lastly, we did not find water to have a significant effect on clot imaging when adjusted. The amount of water tended to increase with the fibrin content, which is likely due to the larger interstitial spaces in fibrin-rich clots. On the other hand, as protein polymers, fibrin fibers should contain a significant amount of water since its protein concentration has been estimated at 20% [29]. Similarly, Brown et al. demonstrated that stretching of fibrin clots leads to fiber bundling with a dramatic decrease in volume due to water loss [30]. In summary, there is water inside fibrin clots, and changes in clot morphology, for example, through repetitive interaction with mechanical thrombectomy devices, could lead to water loss and heightened clot stiffness [31].
Clot composition thus alters the physical properties of the thrombi and hence the effectiveness of endovascular recanalization [31,32,33]. Currently, several endovascular techniques and materials for clot removal are available; some of these have been tested on fibrin-rich clots or with a view to avoiding fragmentation and migration during thrombectomy [22, 34]. This study aimed to discover further insights on clot imaging utilizing NCCT, included in most stroke imaging protocols worldwide. Our analysis has shown that it is possible to find new associations between HU and histology in clot analogs apart from the concept of the hyperdense artery and is intended to serve as a basis for carrying out additional studies in real stroke patients. A positive effect on patient outcomes by implementing stroke therapies based on the clot type to be treated will only be possible if thrombus characterization through imaging significantly improves.
We believe that artificial intelligence has much to contribute to this issue. Even though a considerable amount of data from imaging is required and neuropathology and clinical laboratories will be needed, research should move quickly to discern further patterns based on maximum attenuation values, beyond what meets the eye, so that clot composition can be reliably estimated from a simple CT. Finally, imaging will serve the purpose not only of stroke diagnosis and patient selection but also of implementing and adjusting stroke therapies in this coming era of more personalized medicine.
Limitations
Our study has several limitations. One limitation of the analysis is the lack of data on the volume and mass of thrombi (density = volume/mass), which influence X-ray absorption and hence attenuation.
Using clot analogs in place of human acute ischemic stroke thrombi is a reliable way to uncover further insights into clot imaging, avoiding the inherent variability of thrombi and the physical impracticalities stemming from their small and irregular size and the significant structural disruption caused by retrieval via thrombectomy. The clot analogs used in this study were made from real blood with tight control of RBC composition to allow repeatability at discrete points over the wide compositional range of human stroke thrombi controlling for interclot and intraclot type variability.
This homogeneous clot analog structure enhanced the accuracy of comparing the results of imaging, clinical laboratory, and neuropathology, and it is an attribute that may occur in real clots. By way of further findings, we have reported four attenuation cut-offs for RBC prediction based on our clot analogs, demonstrating that it is possible to obtain more valuable information from a simple CT. Nevertheless, even when the HU cut-offs from the classification model are reasonable, direct extrapolation of the classification should be taken cautiously in respect of human thrombi in acute ischemic stroke using NCCT. Due to the nature of our experiment, based on absolute maximum HU values for clot analogs, the outcome parameter from the absolute values needs to be adjusted to the clot/contralateral artery HU ratio or to the HU differences between sides, values typically used to characterize AIS thrombi in patients using NCCT. Clot heterogenicity could affect the attenuation and may decrease model performance to a certain extent since the maximum attenuation values from axial reconstructions (and not the average minimum HU) were the ones selected to have the best accuracy for predicting histology.
Besides, due to the production process, clot analogs usually underrepresent the content of WBCs that AIS thrombi should contain. In this analysis, similar RBC-rich thrombi displayed variable imaging associated with different WBC contents. Although a hyperattenuating effect of the WBCs (< 1% in clot analogs) could not be ensured, changes in percentage WBCs in human AIS thrombi could lead to differences in attenuation. This aspect requires further investigation, especially considering the well-known hyperdensity of intracranial lymphomas.
Finally, from a statistical standpoint, the results of decision trees are highly dependent on their construction. In this respect, as noted in the “Methods” section, we preferred to simplify the tree as an aid to being able to draw appropriate generalizations from the training data. Although there was no external validation of the performance of the classification model, the final decision tree for RBC content with a total of four HU groups yielded lower cross-validation error and maximum number of groups for a simple single depth-level classification.
Conclusions
We have demonstrated that it is possible to extract more and valuable information from NCCT that can be extrapolated to provide insights into clot histological and chemical composition. The attenuation of clot analogs depended on large measure, and independently, on both the RBC and iron contents. Beyond the well-known concept of the hyperdense artery, we have demonstrated that it is possible to determine not only hyperdense clots but up to four histological groups based on maximum HU values using non-contrast CT. Thus, this new attenuation classification may be helpful in better understanding which kind of clot we are dealing with prior to initiating any stroke therapy and in opening the door to developing new “clot-targeted” treatments.
Abbreviations
- NCCT:
-
Non-contrast CT
- RBCs:
-
Red blood cells
- HU:
-
Hounsfield units
- ROI:
-
Region of interest
- WBCs:
-
White blood cells
- SD:
-
Standard deviation
- IQR:
-
Interquartile range
- AIS:
-
Acute ischemic stroke
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Acknowledgments
The authors thank the team headed by Dr. Ray McCarthy for providing clot analogs weekly as the source material for our study free of charge. Aglaé Velasco Gonzalez (Neuroradiology) performed this study in collaboration with the Institute of Biostatistics and Clinical Research and Institute of Neuropathology at the Faculty of Medicine, Westfälische Wilhelms-Universität Münster (WWU). We also thank Dr. Senner Volker for coordinating and Mrs. Andrea Rothaus of the neuropathology laboratory for preparing and staining the clot analog samples. Special thanks go to our X-ray technicians who always found a way to complete the experiments on time and whose support was invaluable. Finally, the authors thank the University of Muenster for giving us the time to complete this project.
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Aglaé Velasco González performed this study in the context of a program for research backed by the WWU University. One of the authors (Ray McCarthy) is an employee of Cerenovus. Authors who neither advise nor work for the industry had exclusive control over designing and performing the experiment, the data, and data analysis. This study received no industry financial support. All authors have approved the final manuscript.
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Velasco Gonzalez, A., Buerke, B., Görlich, D. et al. Clot Analog Attenuation in Non-contrast CT Predicts Histology: an Experimental Study Using Machine Learning. Transl. Stroke Res. 11, 940–949 (2020). https://doi.org/10.1007/s12975-019-00766-z
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DOI: https://doi.org/10.1007/s12975-019-00766-z