Abstract
Esophageal cancer is one of the most aggressive cancers in the world. Recent large-scale genome-wide association studies (GWAS) reported that functional genetic variations in the phospholipase C epsilon gene (PLCE1) were strongly associated with risk of esophageal squamous cell carcinoma (ESCC) and gastric cardia adenocarcinoma (GCA) in Chinese population. For C20orf54 rs13042395 genotype and risk of esophageal cancer, the results were inconsistent. We conducted a replication case–control study to evaluate the genetic effects of these two functional single nucleotide polymorphisms (SNPs) on the development of esophageal cancer. A total of 380 cases and 380 controls were recruited for this study. The genotypes were determined by matrix assisted laser desorption/ionization time-of-flight mass spectrometry (MALDI-ToF MS). The variant alleles of the functional polymorphism, PLCE1 rs2274223 SNP was associated with the increased risk of esophageal cancer [adjusted odds ratio (OR) = 1.95, 95 % confidence interval (CI) = 1.05–3.59 for PLCE1 rs2274223 GG vs. AA]. However, there was no significant association between the C20orf54 rs13042395 genotype and esophageal cancer risk (adjusted OR = 0.99, 95 % CI = 0.63–1.57 for C20orf54 rs13042395 TT vs. CC). Stratified analyses indicated a significantly increased risk of esophageal cancer associated with the PLCE1 rs2274223 AG genotype was more evident among females, younger patients and never drinkers, compared with the PLCE1 rs2274223 AA genotypes. Stratified analyses also indicated a significantly increased risk of esophageal cancer associated with the PLCE1 rs2274223 GG genotype was more evident among never smokers and never drinkers compared with the PLCE1 rs2274223 AA genotypes. These findings indicated that functional polymorphisms PLCE1 rs2274223 might contribute to esophageal cancer susceptibility.
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Introduction
Esophageal cancer is one of ten most common cancers in the world [1]. ESCC is the most frequent subtype of esophageal cancer and accounts for >90 % of cases [2]. Epidemiological studies indicate that tobacco and alcohol are the major risk factors for esophageal cancer. However, only a subset of individuals exposed to the environmental risk factors would develop esophageal cancer, suggesting a role of host factors and genetic alterations in esophageal cancer carcinogenesis through gene-environment interactions. Some studies have suggested that genetic polymorphisms might explain individual differences in susceptibility to esophageal cancer [3].
The PLCE1 gene is located on chromosome 10q23 [4]. Mutations in PLCE1 have been related with isolated diffuse mesangial sclerosis and some rare cases of focal segmental glomerulosclerosis [4, 5]. The PLCE1 gene encodes phospholipase C epsilon 1 (PLCε1), which catalyzes the hydrolysis of polyphosphoinositides to generate second messengers, such as inositol-1, 4, 5 trisphosphate and diacylglycerol (DAG) [6]. PLCε1 may be related to cellular differentiation and apoptosis through its coaction with Ras family [7, 8]. Studies have reported that PLCε1 plays crucial roles in carcinogenesis and progression of different types of cancers [9–13].
In 2010, two large-scale genome-wide association studies simultaneously reported that a new and notable low-penetrance susceptibility locus (rs2274223) located in PLCE1 was strongly associated with risk of ESCC and GCA in Chinese population [3, 14]. Additionally, one study also showed that the positive rates of the PLCε1 protein in ESCC and GCA tissues were significantly higher than that in normal ones, suggesting a biologically role of PLCε1 in ESCC and GCA carcinogenesis [3]. It has been identified that rs2274223 is a non-synonymous SNP of PLCE1, causing the amino acid change from histidine to arginine. Another SNP rs13042395 was localized to 5′ flanking region of chromosome 20 open reading frame 54 (C20orf54). For C20orf54 rs13042395 genotype and risk of esophageal cancer, the results were inconsistent. One genome-wide association study showed positive result while another didn’t find the association between this polymorphism and esophageal cancer risk [3, 14].
On the basis of the biological and pathologic significance of PLCE1 and C20orf54, it is possible that functional genetic variations in the PLCE1 and C20orf54 gene may contribute to the development of esophageal cancer. The objective of this investigation was to evaluate the association between PLCE1 and C20orf54 genotypes and esophageal cancer susceptibility in a hospital-based case–control study. We performed genotyping analyses for the two SNPs with 380 ESCC cases and 380 controls in a Chinese population.
Patients and methods
Ethical approval of the study protocol
This hospital-based case–control study was approved by the Review Board of Jiangsu University (Zhenjiang, China). All subjects provided written informed consent to be included in the study.
Study subjects
Three-hundred and eighty subjects with esophageal cancer were consecutively recruited from the Affiliated People’s Hospital of Jiangsu University and Affiliated Hospital of Jiangsu University (Jiangsu, China) between October 2008 and November 2009. All cases of esophageal cancer were diagnosed as ESCC by pathologic means. The exclusion criteria were patients who previously had: cancer; any metastasized cancer; radiotherapy or chemotherapy. The controls were patients without cancer frequency-matched to the cases with regard to age (±5 years) and sex recruited from the two hospitals mentioned above during the same time period. Most of these control subjects had trauma or infectious diseases.
Each subject was personally questioned by trained interviewers using a pre-tested questionnaire to obtain information on demographic data (e.g., age, sex) and related risk factors (including tobacco smoking and alcohol consumption). After the interview, 2 mL samples of venous blood were collected from each subject. Individuals who smoked one cigarette per day for >1 year were defined as “smokers”. Subjects who consumed ≥3 alcoholic drinks a week for >6 months were considered to be “alcohol drinkers”.
Isolation of DNA and genotyping by matrix-assisted laser desorption/ionization time-of-flight mass spectrometry (MALDI-ToF–MS)
Blood samples were collected from patients using Vacutainers and transferred to tubes lined with ethylenediamine tetra-acetic acid (EDTA). Genomic DNA was isolated from whole blood with the QIAamp DNA Blood Mini Kit (Qiagen, Berlin, Germany). Genotyping was undertaken by MALDI-ToF–MS as previously described [15]. SNP genotyping was done using the MassArray system (Sequenom, San Diego, California) by MALDI-ToF–MS according to manufacturer’s instructions. Completed genotyping reactions were spotted onto a 384-well spectroCHIP system (Sequenom) using a MassArray Nanodispenser (Sequenom) and determined by MALDI-ToF–MS. Genotype calling was done in real time with MassArray RT software version 3.1 (Sequenom), and analyzed using MassARRAY Typer software version 4.0 (Sequenom) (Figs. 1, 2). For quality control, repeated analyses were done for 10 % of randomly selected samples.
Statistical analyses
Differences in the distributions of demographic characteristics, selected variables, and genotypes of the PLCE1 rs2274223 and C20orf54 rs13042395 variants between the cases and controls were evaluated using the χ2 test. The associations between PLCE1 rs2274223 and C20orf54 rs13042395 genotypes and risk of esophageal cancer were estimated by computing the ORs and their 95 % CIs using logistic regression analyses for crude ORs and adjusted ORs when adjusting for age, sex, smoking and drinking status. The Hardy–Weinberg equilibrium was tested by a goodness-of-fit χ2 test to compare the observed genotype frequencies to the expected ones among the control subjects. All statistical analyses were performed with SAS 9.1.3 (SAS Institute, Cary, NC, USA).
Results
Characteristics of the study population
Among the 380 cases and 380 controls with DNA samples, the genotyping was successful in 379 (99.7 %) cancer cases, and 371 (97.6 %) controls for PLCE1 rs2274223. For C20orf54 rs13042395, the genotyping was successful in 379 (99.7 %) cancer cases and 375 (98.7 %) controls. Characteristics of cases and controls included in the study are summarized in Table 1. The cases and controls appeared to be adequately matched on age and sex as suggested by the χ2 tests (p = 0.056 and p = 0.346, respectively). As shown in Table 1, no significant difference was detected on drinking status between the cases and the controls (p = 0.183), but smoking rate was higher in esophageal cancer patients than in control subjects (p = 0.014).
Associations between PLCE1 rs2274223 and C20orf54 rs13042395 polymorphisms and risk of esophageal cancer
The genotype distributions of PLCE1 rs2274223 and C20orf54 rs13042395 in the cases and the controls are shown in Table 2. The observed genotype frequencies for these two polymorphisms in the controls were all in Hardy–Weinberg equilibrium (p = 0.457 and 0.648 for PLCE1 rs2274223 and C20orf54 rs13042395, respectively). In the single locus analyses, the genotype frequencies of PLCE1 rs2274223 were 53.3 % (AA), 38.8 % (AG), and 7.9 % (GG) in the case patients and 62.8 % (AA), 32.1 % (AG), and 5.1 % (GG) in the control subjects, and the difference was statistically significant (p = 0.023). Logistic regression analyses revealed that subjects carrying the PLCE1 rs2274223 GG variant homozygote had a significantly 1.95-fold (adjusted OR = 1.95; 95 % CI = 1.05–3.59) increased risk of esophageal cancer, compared with the PLCE1 rs2274223 AA wide-type homozygote. However, the genotype frequencies of C20orf54 rs13042395 were not significantly different between the cases and the controls (p = 0.991). Logistic regression analyses revealed that the both C20orf54 rs13042395 TT variant genotype and the C20orf54 rs13042395 CT heterozygote were not associated with the risk of esophageal cancer (adjusted OR = 0.99, 95 % CI = 0.63–1.57 for rs13042395 TT and adjusted OR = 0.97, 95 % CI = 0.71–1.33 for rs13042395 CT, respectively), compared with the C20orf54 rs13042395 CC wide-type homozygote.
In the dominant model, the PLCE1 rs2274223 AG/GG variants were associated with increased risk of esophageal cancer, compared with the PLCE1 rs2274223 AA genotype (adjusted OR = 1.51, 95 % CI = 1.12–2.03). For the C20orf54 rs13042395 C/T polymorphism, the C20orf54 rs13042395 CT/TT genotypes were not associated with the risk of esophageal cancer (adjusted OR = 0.98, 95 % CI = 0.73–1.31), compared with the C20orf54 rs13042395 CC genotype.
In the recessive model, the PLCE1 rs2274223 GG variant homozygote was not associated with the risk of esophageal cancer, compared with the PLCE1 rs2274223 AA/AG genotypes (adjusted OR = 1.69, 95 % CI = 0.93–3.08). For the C20orf54 rs13042395 C/T polymorphism, the C20orf54 rs13042395 TT genotype was not associated with the risk of esophageal cancer (adjusted OR = 1.01, 95 % CI = 0.66–1.54), compared with the C20orf54 rs13042395 CC/CT genotypes.
Stratification analyses of PLCE1 rs2274223 and C20orf54 rs13042395 polymorphisms and risk of esophageal cancer
To evaluate the effects of PLCE1 rs2274223 and C20orf54 rs13042395 genotypes on esophageal cancer risk according to different age, sex, smoking and alcohol drinking status, we performed the stratification analyses (Table 3).
A significantly increased risk of esophageal cancer associated with the PLCE1 rs2274223 AG genotype was more evident among females (adjusted OR = 1.85, 95 % CI = 1.04–3.27), younger patients (adjusted OR = 1.85, 95 % CI = 1.04–3.31) and never drinkers (adjusted OR = 1.46, 95 % CI = 1.00–2.13), compared with the PLCE1 rs2274223 AA genotypes.
A significantly increased risk of esophageal cancer associated with the PLCE1 rs2274223 GG genotype was more evident among never smokers (adjusted OR = 2.26, 95 % CI = 1.08–4.74) and never drinkers (adjusted OR = 2.11, 95 % CI = 1.03–4.35), compared with the PLCE1 rs2274223 AA genotypes.
Both C20orf54 rs13042395 TT variant genotype and the C20orf54 rs13042395 CT heterozygote were not associated with the risk of esophageal cancer after stratification.
Discussion
In this hospital-based case–control study of esophageal cancer, we investigated the associations of PLCE1 rs2274223 and C20orf54 rs13042395 SNPs with risk of esophageal cancer in a high risk Chinese population. Our multivariable logistic analysis revealed that PLCE1 rs2274223 AG and GG genotype had an increased risk of esophageal cancer. For PLCE1 rs2274223 GG genotype, this effect was more evident among never smokers and never drinkers.
PLCε1 has been speculated to be a direct downstream effector for Ras GTP [16, 17]. It has been reported that several molecules that are either upstream or downstream of Ras promote oncogenesis [18]. PLCε1 has an oncogenic role in carcinogenesis of several human cancers through inflammation, binding to small GTPase and augmentation of angiogenesis [19].
Mutational activation of the ras proto-oncogenes is frequently found in cancers. PLCε1 may also function as a Ras receptor and could play a role in promoting apoptosis, thereby acting as a tumor suppressor [20]. PLCε1 may be involved in the development of sporadic colorectal cancer through its inhibitory effect on cell proliferation [20]. Overexpression of PLCε1 significantly inhibited the proliferation of colon cancer cells and degraded its malignant degree [20]. PLCE1 rs2274223 is a non-synonymous SNP with A to G transition in exon 26, which results in a substitution of histidine to arginine. Wang et al. [3] found that PLCE1 rs2274223 was associated with an increased risk of ESCC. Abnet et al. [14] also reported that PLCE1 rs2274223 was a notable signal for susceptibility to ESCC, which is consistent with our results.
There was no significantly association between the C20orf54 rs13042395 genotype and esophageal cancer risk in our population. These findings were not consistent with one recent GWAS identified the variation of C20orf54 rs13042395 as risk factors for esophageal cancer in Chinese population [3]. However, in a different Chinese population, another GWAS found negative result, which is in according with our research [14]. In a previous research, no significant association was detected between C20orf54 rs13042395 at 20p13 and gastric cancer risk [21].
The frequencies of genetic polymorphisms often vary between ethnic groups. In the present Chinese study, the allele frequency of PLCE1 rs2274223 G was 0.212 among 380 control subjects, which is consistent with that of Chinese Han population (0.20 among 1,733 control subjects of GWAS samples, 0.22 among 11,013 control subjects of ESCC replication 1 in GWAS by Wang et al. and 0.209 in another 3,302 controls combined in GWAS by Abnet et al. [3, 14]) but significantly lower than that of non-Hispanic whites (0.320 among 1,090 control subjects) [19].
In this case–control study, several limitations need to be addressed. Firstly, we enrolled the patients and controls from the hospitals and the study subjects may not be representative of the general population, inherited biases may lead to spurious findings. Secondly, the polymorphisms investigated in our study, based on their functional considerations, may not give a comprehensive view about genetic variability in PLCE1 and C20orf54. Further studies by fine-mapping the susceptible region of the variants are needed to clarify the genetic mechanism of esophageal carcinogenesis. Thirdly, the moderate sample size limited the statistical power of our study. With the sample size of 380 cases and 380 controls, we have an 80 % statistical power to test the lowest OR of 1.598(0.581) for PLCE1 rs2274223 and 1.512(0.645) for C20orf54 rs13042395. Large well-designed studies are warranted to confirm our findings, particularly the gene-environment interaction. Finally, we did not obtain a detailed information on cancer metastasis and survival information, which restricted us from further analyses on the role of PLCE1 and C20orf54 polymorphisms in esophageal cancer progression and prognosis.
In conclusion, our study provides strong evidence that functional polymorphism of PLCE1 rs2274223 may contribute to the risk of esophageal cancer. However, our results were obtained with a limited sample size and therefore allowed us to draw just preliminary conclusions. Validation of these findings with functional evaluation and larger studies with more rigorous study designs of other ethnic populations are needed.
Abbreviations
- CI:
-
Confidential interval
- GWAS:
-
Genome-wide association study
- LD:
-
Linkage disequilibrium
- OR:
-
Odds ratio
- SNPs:
-
Single nucleotide polymorphisms
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Acknowledgments
This study was supported in part by National Natural Science Foundation of China (81101889) and Social Development Foundation of Zhenjiang (SH2010017).
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Haiyong Gu and Guowen Ding contributed equally to this work.
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Gu, H., Ding, G., Zhang, W. et al. Replication study of PLCE1 and C20orf54 polymorphism and risk of esophageal cancer in a Chinese population. Mol Biol Rep 39, 9105–9111 (2012). https://doi.org/10.1007/s11033-012-1782-x
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DOI: https://doi.org/10.1007/s11033-012-1782-x