Abstract
Bone morphogenetic proteins (BMPs) are cytokines from the TGF-β superfamily, with important roles during embryonic development and in the induction of bone and cartilage tissue differentiation in the adult body. In this contribution, We report here the application of small ubiquitin-related modifier (SUMO) fusion technology to the expression and purification of human BMP-14. The fusion protein expressed in a soluble form was purified to a purity of 90% by Ni-IDA chromatography. After the SUMO-BMP14 fusion protein was cleaved by the SUMO protease at 30 °C for 1 h, the cleaved sample was re-applied to a Ni-IDA. Finally, about 45 mg recombinant hBMP-14 was obtained from 1 litre bacterial culture with no less than 95% purity. The purified hBMP-14 dimer was over 90% purity and could induce the expression of alkaline phosphatase activity in C2C12 cells in a dose-dependent manner. Thus the SUMO-mediated peptide expression and purification system potentially could be employed for the production of other homodimeric proteins.
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1 Introduction
Bone morphogenetic proteins (BMPs) are a group of proteins involved in the development of many organs and tissues as well as in the establishment of the basic embryonic body plan [6]. Their crucial role in the latter sets the stage for their potential use in the regeneration of many types of tissues following injuries and diseases [7].
BMP-14 (synonyms: Cartilage-Derived Morphogenetic Protein 1, Growth differentiation factor-5) that belongs to the TGF-β family, has received special attention because it plays a critical role in the early stages of development. BMP-14 is an important mediator for the growth and morphogenesis of various tissues and organs in mammals. The action of BMP-14 is more specially targeted to skeletal development. In vitro studies also show that the BMP-14 is expressed in early cartilage condensation, the perichondrium and the joint interzone [4, 5]. This effect on skeletal growth is corroborated by pathological conditions in mice and men involving mutations within the BMP-14 gene and resulting in loss of function [3]. Currently, most BMPs are obtained from mammalian cell cultures in low yields [1, 14] or from bacteria inclusion bodies after time-consuming refolding procedures [11–13]. The aim of the present work was to develop a highly productive and simple process for the production of human BMP-14 (hBMP-14).
In this paper, we described in detail the cloning of the hBMP-14 gene into pSUMO vector, the expression of SUMO-BMP14 in a soluble form, purification, and the biological assay of recombinant hBMP-14.
2 Materials and Methods
2.1 Bacterial Strains, Vectors and Enzymes
Escherichia coli DH5α (maintained in our laboratory) was used for subcloning and plasmid amplification. E. coli BL21 (DE3) (Novagen, USA) was used as the expression host. The linearized pSUMO vector with BsaI and BamHI restriction sites and T7 promoter and kanamycin resistance was purchased from LifeSensors (LifeSensors, Malvern, PA, USA). All the restriction enzymes and T4 DNA ligase were purchased from Takara Biotech Co. Ltd. (Dalian, China).
2.2 Construction of Expression Vectors
The gene encoding mature peptide of hBMP-14 according to the amino acid sequence from the PeproTech Inc. (http://www.peprotech.com/product.asp?product%5Fid=120%2D01%28PeproTech+Base+Catalog%29&category%5Fname=Display%28PeproTech+Base+Catalog%29&search=GDF-5) was amplified by PCR from cloning vector PMD18-T/BMP-14 obtained from the GenScript Corporation, China (http://www.genscript.com.cn/index.html) which contained the full-length hBMP-14 cDNA. The PCR fragments were separated by 1.5% gel electrophoresis, purified with a DNA gel extraction kit (AxyGEN Union, USA). The resulting PCR product was digested with BsaI and BamHI, and ligated into the pSUMO plasmid at the corresponding restriction sites. The ligation mixture was transformed into E. coli DH5α cells for verification by sequencing.
2.3 Fusion Protein Expression
Plasmid pSUMO-BMP14 was transformed into competent E. coli BL21 (DE3). A single colony of E. coli BL21 (DE3) was picked and transferred to 3 mL Luria–Bertani (LB) medium containing 50 μg/mL of kanamycin (LB-Kan). This culture was incubated overnight at 37 °C and 200 rpm. The overnight culture was diluted 1:100 in LB-Kan and incubated at 37 °C and 200 rpm until an OD600 of 0.6–0.8 was reached. The culture was then cooled to about 20 °C for 30 min and expression of hBMP-14 was induced by the addition of 0.2 mM IPTG. After a further incubation for 6 h at 20 °C and 200 rpm, bacteria were centrifuged (10 min, 6,000 rpm, 4 °C), washed once with PBS and frozen at −70 °C.
2.4 Purification of SUMO Fusion Protein
The pellet from 200 mL culture was resuspended in 15 mL binding buffer (20 mM Tris, 500 mM NaCl, 20 mM imidazole, and 10 mM PMSF, pH 8.0) and lysed on ice by sonication at 400 W for 100 cycles (4 s working, 8 s free). The supernatant of the cell lysate after centrifugation at 12,000×g at 4 °C for 20 min was applied to a Ni2+-chelating column. After extensive washing with binding buffer, the fusion protein was eluted with five column volumes of elution buffer (20 mM Tris, 500 mM NaCl, and 250 mM imidazole, pH 8.0). The peak fractions containing the fusion protein were pooled and dialyzed overnight at 4 °C against phosphate-buffered saline (PBS).
2.5 Cleavage of the Fusion Proteins and Purification of Released hBMP-14
The SUMO-BMP14 protein (50 μg) was reacted with 1 U of SUMO protease at 30 °C for 1 h. Since both SUMO and SUMO protease had 6× His tags, but hBMP-14 did not, the cleaved SUMO-BMP-14 samples could be re-applied to the nickel column to obtain the purified hBMP-14 by subtracting the 6× His-tagged proteins. Briefly, after the SUMO fusions were cleaved by the SUMO protease, the sample was loaded onto a nickel column with Ni-IDA resin. Most of the hBMP-14 without 6× His tags was eluted in the flow-through (unbound) fractions, and the rest was recovered by washing the resin with binding buffer. The eluted and washed proteins appearing in fractions with high-UV values at OD280 were pooled as the final purified sample. The purified proteins were checked by SDS-PAGE and the samples were stored at −80 °C for activity assay.
2.6 Reducing and Non-reducing SDS-PAGE
Electrophoresis was done using hand-cast 12% SDS-PAGE gels. Samples were mixed with either 2× SDS Gel-loading buffer with DTT (reducing SDS-PAGE) or with 2× SDS Gel-loading buffer without DTT (non-reducing SDS-PAGE) and boiled for 5 min at 95 °C before loading.
2.7 Biological Activity Assay of hBMP-14
The biological activity of hBMP-14 was tested by the induction of alkaline phosphatase activity (ALP) in C2C12 cells [10]. C2C12 cells were grown in MEM with 2 mM l-glutamine, 0.1 mM non-essential amino acids, 1 mM sodium pyruvate, and 10% fetal bovine serum (Invitrogen) at 37 °C and 10% CO2. One milliliter medium containing 1 × 105 C2C12 cells was plated in a 24-well plate and the medium was replaced with 1 mL of fresh medium containing different concentrations of hBMP-14 after 24 h. After 4 days, cells were lysed in 0.2 mL buffer A (0.1 M glycerol, pH 9.6, 1% NP-40, 1 mM MgCl2, and 1 mM ZnCl2). Fifty microliters of cell lysates were mixed with 150 μL of 0.3 mM p-nitrophenyl phosphate (Sigma) in buffer A and incubated in a 96-well plate at 37 °C for 30 min. The ALP was determined using VERSAmax tunable microplate reader (Molecular Devices) with absorbance set at 405 nm.
3 Results
3.1 Plasmid Construction and the Expression of hBMP-14 Fusion Protein
Recombinant plasmid pSUMO-BMP14 sequence containing a His-tag for affinity purification was verified by DNA sequencing. Construct was transformed into the expression host E. coli BL21 (DE3), and subjected to a pilot expression test. As shown in Fig. 1a, there was an obvious protein band after IPTG induction, and colony 1 was chosen for the induction experiment.
3.2 Purification of SUMO-BMP14 Fusion Protein
As described above, Ni-IDA resin was used for fusion protein purification. Most of the proteins without 6× His tags were removed from the Ni-IDA resin using washing buffer containing 20 mM imidazole, and the 6× His-tagged SUMO-BMP14 (about 33 kDa) was eluted using elution buffer containing 250 mM imidazole with more than 90% purity (Fig. 1b). About 245 mg fusion protein can be obtained per liter of bacterial culture (Table 1).
3.3 Cleavage of the Fusion Proteins and Purification of Recombinant hBMP-14
The SUMO-BMP14 protein (50 μg) was competently cleaved with SUMO protease (1 U) at 30 °C for 1 h, confirmed by checking the proteins by a SDS-PAGE (Fig. 2a). After the cleaved sample was re-applied to a Ni-IDA column to subtract 6× His-tagged SUMO and SUMO protease, final purified hBMP-14 was obtained with more than 95% purity (Fig. 2a). The flow-through was analyzed with SDS-PAGE gels under non-reducing (Fig. 2b, lane 1) or reducing (Fig. 2b, lane 2) conditions. The purified hBMP-14 (about 13.57 kDa) was filtered through 0.22 μm and stored at −80 °C for activity assay. Table 2 shown the comparison of the SUMO fusion partner with other expression systems in production of recombinant hBMP-14. Finally, a purified recombinant hBMP-14 was produced at a yield of 45 mg/L (Table 1).
3.4 Biological Activity Test
Bioactivity of purified hBMP-14 was tested in vitro bioassay. The purified hBMP-14 was diluted in Tris–EDTA buffer (100 mM Tris/HCl, 1 mM EDTA, pH 8.5) containing 1% BSA. The recombinant hBMP-14 could induce the expression of ALP in C2C12 cells in a dose-dependent manner compared to the negative control (serum-free medium or SUMO-BMP14). As a positive control, cells were incubated with 10% FBS (Fig. 3).
4 Discussion
Expressing recombinant cytokine proteins, especially proteins with disulfide bridges, is quite an arduous task because they often fold incorrectly and aggregate, leading to either rapid degradation or to the accumulation of inclusion bodies when expressed in E. coli. Fortunately, these problems are somewhat alleviated when expressed with a fusion partner. However, in the past, traditional fusion systems have given variable results of expression and have faced major problems attributed to either the inefficient cleavage of the fusion protein or cleavage within the target protein, both of which compound the difficulties of purification [15]. SUMO is superior to commonly used fusion tags in enhancing expression and solubility with the added advantage of generating recombinant protein with native sequences [8]. We hypothesized that the attachment of a highly stable and compact SUMO structure to the N-terminus of hBMP-14 would facilitate correct protein folding and enhance solubility and expression.
In previous reports, recombinant hBMP-14 production was achieved in bacterial inclusion bodies in fairly large amounts [9]. However, inclusion bodies require time-consuming steps for solubilization and refolding. Then soluble expression of recombinant hBMP-14 was achieved in E. coli using pET-25b vector and yield 35 mg/L. However, an extra 6× his-tag partner was left at the N-terminus of hBMP-14 [2]. In our approach, we expressed hBMP-14 as SUMO fusions in E. coli to evaluate the roles of SUMO and SUMO protease on the production of the cytokines. The SUMO fusion protein was successfully expressed in E. coli and high expression levels of soluble fusion protein were achieved. The fusion protein could be purified in one step with a purity of not less than 90% (Fig. 1b), and 245 mg SUMO-BMP14 was obtained per liter bacterial culture (Table 1). The fusion protein was then completely cleaved by SUMO protease, which is remarkably robust and highly specific. The hBMP-14 protein was recovered with 95% purity by purification with nickel affinity chromatography again, and 45 mg hBMP-14 was obtained per liter bacterial culture finally (Fig. 2a; Table 1). The biologically active hBMP-14 is a homodimeric protein. The purified hBMP-14 dimer was analyzed by SDS-PAGE with or without reducing reagent DTT. As shown in Fig. 2b, the purified hBMP-14 dimer was over 90% purity and could be further reduced to monomer. And the recombinant hBMP-14 could induce the expression of ALP in C2C12 cells in a dose-dependent manner (Fig. 3b).
In summary, the SUMO fusion system and customized expression and purification protocol described here have greatly improved the efficiency and lowered the costs of producing hBMP-14. There are many proteins that have structures similar to BMP-14, such as the TGF-β superfamily, the SUMO fusion technology could be also widely applied to the production of other homodimeric proteins in E. coli.
Abbreviations
- hBMP-14:
-
Human bone morphogenetic protein-14
- SUMO:
-
Small ubiquitin-related modifier
- IPTG:
-
Isopropyl-β-d-1-thiogalactopyranoside
- ALP:
-
Alkaline phosphatase activity
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Acknowledgments
Published data referred to in this manuscript were supported by a grant of the National Natural Science Foundation of China (Grant No. 30900743) and A Project Funded by the Priority Academic Program Development of Jiangsu Higher Education Institutions (PAPD).
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Li, J.F., Cui, X.W., Ji, H.Y. et al. High Efficient Expression of Bioactive Human BMP-14 in E. coli Using SUMO Fusion Partner. Protein J 30, 592–597 (2011). https://doi.org/10.1007/s10930-011-9368-3
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DOI: https://doi.org/10.1007/s10930-011-9368-3